Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

31567571 .. 31568446

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1245800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCCAAGGAAAACGTTCAGGCGTACGGCGGAGGGCTCACGGCGGAACAAAGAAACCGCATCTCTCGGAATTTCAGAGCCGCCAAGGCCCTCATTGATCGCAAACGCCCCCGCAACGACGCCGTTTCACCTGATCATCACCTCCCTCATACCAAAATCTGTGGCGGAAATGGAATCCAAACGCCAACTCAGCTCAATAGAGTTCAAAGAACACCGCCTCCGATTTCCGCAAGCCGGTACAATTCAGCGCGTGGTGAATATGGCAGTGCTTCGTGTTCCGGGAGCTTAAGCGTTAGCCGGACAGAATCAAGCGTGTCAAAATCGGATTCTTTCACAACTCCAATCAGACATCAGTTTCTGACTTCATTTGATTCTTTCTCTGCATCTGGAATTCTTAACGATGATGATTTCGATGAGAGTATTTTGCAGGAAATTGACGCTTTAATTGAGCAGAAACCAAGTGTGGACATTCAGCGTGATGATATTGGGAGTTGTGGTAGTGACGTTCGTGCCGCATCAGCGCCGCCTTTGAGTAGTGAAAACCAAACGGATTCCGTTAACCATGGATTGCCTAACATGCCGGATGAGTATTTGAAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

201

Amino Acids

21.8

Weight (kDa)

5.95

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	250
AclI	AACGTT	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	70, 390
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	26, 239
AfiI	CCNNNNNNNGG	1 cut(s)	234
AflII	CTTAAG	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	206, 595
AloI	GAACNNNNNNTCC	2 cut(s)	202, 234
AluBI	AGCT	2 cut(s)	193, 285
AluI	AGCT	2 cut(s)	193, 285
AlwNI	CAGNNNCTG	1 cut(s)	358
AoxI	GGCC	1 cut(s)	87
ApoI	RAATTY	2 cut(s)	70, 390
Asp700I	GAANNNNTTC	1 cut(s)	15
AspLEI	GCGC	2 cut(s)	250, 523
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	3 cut(s)	120, 131, 266
BanII	GRGCYC	1 cut(s)	39
BceAI	ACGGC	3 cut(s)	43, 57, 107
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	524
BfrI	CTTAAG	1 cut(s)	286
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	3 cut(s)	81, 513, 524
BlsI	GCNGC	3 cut(s)	82, 514, 525
Bme1390I	CCNGG	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	3 cut(s)	69, 392, 524
BpuMI	CCSGG	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	6, 84, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 481, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	6, 84, 562
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	235, 279, 298, 581
BsiWI	CGTACG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	234
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	97, 133
Bsp19I	CCATGG	1 cut(s)	562
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	250
BspTI	CTTAAG	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	3 cut(s)	6, 84, 562
BssMI	GATC	2 cut(s)	97, 133
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	3 cut(s)	6, 84, 562
BstACI	GRCGYC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	2 cut(s)	250, 523
BstKTI	GATC	2 cut(s)	100, 136
BstMBI	GATC	2 cut(s)	97, 133
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 190, 518, 577
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	278
BstUI	CGCG	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	358
CfoI	GCGC	2 cut(s)	250, 523
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	88
CseI	GACGC	2 cut(s)	128, 446
Csp6I	GTAC	2 cut(s)	25, 238
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	2 cut(s)	563, 577
CviJI	RGCY	7 cut(s)	37, 80, 89, 193, 234, 285, 297
CviKI_1	RGCY	7 cut(s)	37, 80, 89, 193, 234, 285, 297
CviQI	GTAC	2 cut(s)	25, 238
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	99, 135
DpnII	GATC	2 cut(s)	97, 133
EciI	GGCGGA	3 cut(s)	45, 59, 180
Eco130I	CCWWGG	3 cut(s)	6, 84, 562
Eco24I	GRGCYC	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	390
EcoT14I	CCWWGG	3 cut(s)	6, 84, 562
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	6, 84, 562
FaeI	CATG	2 cut(s)	566, 580
FaiI	YATR	4 cut(s)	150, 261, 564, 578
FatI	CATG	2 cut(s)	562, 576
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	81, 513, 524
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	81, 513, 524
GlaI	GCGC	2 cut(s)	249, 522
GluI	GCNGC	3 cut(s)	81, 513, 524
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	4 cut(s)	235, 279, 298, 581
HgaI	GACGC	2 cut(s)	128, 446
HhaI	GCGC	2 cut(s)	250, 523
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	566, 580
Hin6I	GCGC	2 cut(s)	248, 521
HinP1I	GCGC	2 cut(s)	248, 521
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	5 cut(s)	174, 305, 326, 371, 551
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	4 cut(s)	235, 279, 298, 581
HphI	GGTGA	3 cut(s)	120, 131, 266
Hpy166II	GTNNAC	2 cut(s)	466, 559
Hpy188I	TCNGA	6 cut(s)	69, 77, 222, 325, 347, 360
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	2 cut(s)	466, 559
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	15, 504
HpyCH4V	TGCA	2 cut(s)	383, 427
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 190, 518, 577
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	15, 504
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	566, 580
HspAI	GCGC	2 cut(s)	248, 521
Ksp22I	TGATCA	1 cut(s)	133
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	97, 133
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	8 cut(s)	5, 144, 248, 292, 311, 372, 413, 594
LweI	GCATC	3 cut(s)	69, 392, 524
MaeII	ACGT	2 cut(s)	15, 504
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	2 cut(s)	99, 135
MboI	GATC	2 cut(s)	97, 133
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	5 cut(s)	70, 241, 390, 432, 444
MnlI	CCTC	5 cut(s)	26, 101, 152, 156, 228
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	4 cut(s)	287, 396, 443, 558
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	4 cut(s)	235, 279, 298, 581
MspR9I	CCNGG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	86, 190, 518, 577
NciI	CCSGG	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	2 cut(s)	97, 133
NlaIII	CATG	2 cut(s)	566, 580
NmuCI	GTSAC	1 cut(s)	500
NspI	RCATGY	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	5 cut(s)	174, 305, 326, 371, 551
Pfl23II	CGTACG	1 cut(s)	24
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	82, 514, 525
Psp1406I	AACGTT	1 cut(s)	15
PspLI	CGTACG	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	358
RsaI	GTAC	2 cut(s)	26, 239
RsaNI	GTAC	2 cut(s)	25, 238
SaqAI	TTAA	4 cut(s)	287, 396, 443, 558
SatI	GCNGC	3 cut(s)	81, 513, 524
Sau3AI	GATC	2 cut(s)	97, 133
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	18, 133, 144, 195, 287, 507
SfaNI	GCATC	3 cut(s)	69, 392, 524
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	5 cut(s)	70, 241, 390, 432, 444
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	3 cut(s)	6, 84, 562
TaiI	ACGT	2 cut(s)	18, 507
TaqI	TCGA	1 cut(s)	411
TasI	AATT	5 cut(s)	70, 241, 390, 432, 444
TauI	GCSGC	3 cut(s)	83, 515, 526
TfiI	GAWTC	5 cut(s)	174, 305, 326, 371, 551
Tru1I	TTAA	4 cut(s)	287, 396, 443, 558
Tru9I	TTAA	4 cut(s)	287, 396, 443, 558
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	2 cut(s)	544, 563
TspRI	CASTG	1 cut(s)	271
Vha464I	CTTAAG	1 cut(s)	286
XapI	RAATTY	2 cut(s)	70, 390
XceI	RCATGY	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.