Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003601

Physical Location & Seq

Genomic Coordinates Reverse (-)

48310001 .. 48320413

Gene Structure 10413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2892 bp

ATGTCCAAAGAAAACGGTCAAATCCACGGCGGAGGCGGACTCACGGAGGAGCAAAGAAACCGAATTTCTCGGAATTACAGAGCCGCCAAGGCTCTTCTCGACCGTAAACGCCCTCGTAACGACGCCGTTTCGCCTGATGCACACTTCCCTCACAGCAAATTCCGAACTCCTACTCAGCTTAATCGGCGAGCTCCTCTTGCTGAGCTAACGGTAAATACTCCATCTCCATTTTCTGTGAATCGCTGCAACTCAGCGGTTTCTGAATCCAGCACCGGTTCATTTTGTGAGAGCTCAAGCTCAGTCATTACTCGGATTGAAGATTCGTTCACTACTCCGATCAGGCAACCGCAGTTTTGTACTCCAGTTGATTCTTTCTCGGCGGCGACCGGAATTCTGGACGACGACGATGATTTCGATGAGAGTGTTTTGCAGGAGATTGACGCTTTGATCGAGCAGAAAACTCTGCAAGTTCAGCGTGATGTTAATGTGAATGGTTCTGCGGTGGCACGTGTGATTAGTGGCGGTGGAGGTGATTCTACTGACCATGGATTACCGAGCATGCCGGATGAGTACTTGAAGTATTTACAGTCTCTCAATGACCGGCAATGCGAAGCGGCTTGTAGTGACATTGCAACACCATTGATGATTGCTGCAGGACCTGGAAGTGGAAAGACCTCAACTATGGTTGGGCGTGTTCTAATGCTGCTTAATGAGGGGATTAGTGCATCCAACATTCTAGCAATGACTTTCACTATAGCAGCAGCTTCCGAGATGAGAGAGCGCATTGCAAAGGTGGCTGGGAAAGCAGCGGCAAAAGAACTTACAATCAGCACCTTTCATTCATTTTCGTTGCAGCTTTGTCGATCACATGCAGAGAAACTTGAGCGCACACCAGAGTTCTTAATATATGGACATGGACAACAGAGAAGAGCAATTATTGAAGCTGTGCGGTTATCAGAAAATGGAAAGAGTAGGCCGAAATATAATGTCGGCATGGACAGTGAAGAGTCTAATGGTTTGACTTCTCCTCATCACTTTAAGGATGCGTCAAAGAAATGGCTGAAATTTGTAACTCAGGCAAAAGCTTCTGGAAAGACTCCTGCAGAATACAGTAAAATGGGCAATGAGATAGGGGCTGAGATTCTTGGAAACTACAATGATATCTTAAAATCTTGCAATGCCTTGGACTACCATGACTTGATTAGCTGCTCTGTGAAGCTGCTCACGGATTTTCCTGAAGTGTTAAAGGAGAGCCAGGATTCATGGAAAGCCATTGTCATAGATGAGTTTCAAGACACAAGTGCTATGCAATATAGTCTTCTGCGGATTCTTGCCTCTCACAACCACATAACCATTGTTGGAGATGATGATCAATCGATTTTCAGTTTCAATGGAGCAGACATTTCTGGATTTGATTCCTTCCGTAAGGATTTCCCCATTTACAGAGAGATTAGACTCAATAAAAACTATCGGTCTACACGCTATATTGTGGAAGCTGCATCATGTGTCATAAAAAACAATAAGAAGAGATGTCAGCTAAAGAATGTTGACACCGACAACTCTTCTGGATCCAAGATTGTTATCAAAGAATGCCACAATGAGGATGCACAATGTGCCTTTGTTGTTGACAAGATCTTGGAGACCATATCAAACCAATCAAATGTAAAGTGCTCATTCGGAAACATTGCAATCCTTTACCGGAGGCAGGTATCAGGAAAAGTCTTCCAAACAGCCTTTCGTGAAAGGAAAATACCTTTTAATGTCCATGGAGTAGCAGTTTATCGGAAGAAGGTAGTTAGAGCCATTATTGCTATGCTTAGAACAACTTTGCCTGGTTGTGATGATGGATCATATCGCCGAGTCTTCAAGGCTTTACTTCCTTTTGAGAAAGAGGAAAAGAAGAAGGTGATTGATTACATTGACAAAATTTCTACTGCCAGAAAATTCAGCTTCATATCAGCTGCTGGTGAAATTTTCAGTGCAAAAGTTTCTGGGAACTTGAAGAGGCCTCAGCTTACTCAAGGACGCAAGGTGCTGTTGACATTAGAGATGATTTCAAAACTCGTTCACAGGGAACAATCAATTTCAGCTGTCATAACCTCAGTGGCGAACATGGTACCACAGAAATACCTTCTGGAGCAACGTGCTATCGTCGATGTTGATGGTGGGAAGTTGCTAAATGAAGACAATGATATGAGATCTGTTCTTCAGTACCTACTGGATGATATATCTGATTTTCTATCCACTCATTTTGCTGCGGCAGAAGGGGAGAGAGAAGTTGTAGAAGGAGATAAAGGATGTCTTAATTTACTCAAAGCTTTCATTGACTACATATCTGAGCGGGAGAGTGAAAACTTTCGCTCCCGAAGACATGACAACGAAACTTCTGTTACCTTAACTACCATTCATCAGTCAAAAGGTTTAGAATGGGACATTGTTTTCATAATTAAGGTAAATGAATGTGAGATACCGTTGTTGCATGAATTCAATGGTAGTGCAAAAGAGAATGGGACGTCCATTGAGGAGGAAAGACGCCTATTATATGTTGCAATGACTCGTGCTCGAACAAAACTTTTCATTCTTTATGTTTTGACGGATTCCAATTGGCAGATGCTTCAACCTTCACGGTTTCTCAGAGAAATTCCAAATCATCTTCGAGAAGAACAGGCTGACATAGAAAAGCAAGATTTACAGTCAAAGCATCATGACATTTCAAAAGGAACTACTGGGTTGTTGGCTGATCTACGACCAAACATTCGACCCTCTGAAGAAGATGTGGTGCAGAATGATTTTCACCCTAGCAAACTTGATGAAGCTTCTACAGAGTTGACTGAATTTGTGGAGGCAAACTTTGGAACTGGTTTCTTAAAAAGGTTCTGTTTCCAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0032392 GO:0032508 GO:0034641 GO:0036292 GO:0043138 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UvrD-helicase UvrD_C

Protein Analysis

963

Amino Acids

107.88

Weight (kDa)

6.57

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UvrD-helicase	PF00580	198 - 479	2.2e-67	UvrD/REP helicase N-terminal domain
AAA_19	PF13245	212 - 463	1.1e-21	AAA domain
UvrD_C	PF13361	484 - 863	8.5e-45	UvrD-like helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25120
fragaria_vesca	FvH4_7g26710 FvH4_7g26710 FvH4_7g26710 FvH4_7g26710
malus_domestica	MD07G1241600.v1.1 MD07G1241700.v1.1 MD07G1243100.v1.1 MD07G1243600.v1.1 MD07G1244100.v1.1 MD07G1244200.v1.1 MD07G1244300.v1.1 MD07G1244800.v1.1 MD07G1245200.v1.1 MD07G1245700.v1.1 MD07G1245800.v1.1
prunus_persica	Prupe.2G270600_v2.0.a1 Prupe.2G270600_v2.0.a1
pyrus_communis	pycom07g21810 pycom07g21980
rosa_chinensis	RchiOBHm_Chr1g0373301
rosa_laevigata	RLG00000001620 RLG00000006922 RLG00000035899
rosa_multiflora	Rmu_ssc0000435.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284280
rosa_rugosa	Rorug01G0376900
rosa_samantha	Rh1AG385900 Rh1BG350100 Rh1CG363200 Rh1DG380900 Rh3CG316100 Rh5CG053300 Rh5DG386500
rosa_wichuraiana	Rw1G034900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2516
Acc36I	ACCTGC	1 cut(s)	1696
Acc65I	GGTACC	1 cut(s)	2116
AccB1I	GGYRCC	1 cut(s)	2116
AccBSI	CCGCTC	1 cut(s)	2341
AccI	GTMKAC	1 cut(s)	1475
AclWI	GGATC	3 cut(s)	1563, 1576, 1855
AcuI	CTGAAG	3 cut(s)	1257, 2192, 2787
AcvI	CACGTG	1 cut(s)	509
AcyI	GRCGYC	3 cut(s)	123, 2513, 2533
AdeI	CACNNNGTG	1 cut(s)	1613
AfaI	GTAC	4 cut(s)	358, 572, 2118, 2213
AfiI	CCNNNNNNNGG	3 cut(s)	665, 1600, 1705
AflIII	ACRYGT	1 cut(s)	508
AgeI	ACCGGT	1 cut(s)	272
AjnI	CCWGG	3 cut(s)	658, 1254, 1831
AjuI	GAANNNNNNNTTGG	2 cut(s)	1719, 1751
Alw21I	GWGCWC	4 cut(s)	193, 293, 1673, 2563
Alw26I	GTCTC	2 cut(s)	594, 1634
AlwI	GGATC	3 cut(s)	1563, 1576, 1855
AlwNI	CAGNNNCTG	2 cut(s)	659, 1964
AoxI	GGCC	2 cut(s)	974, 2006
ArsI	GACNNNNNNTTYG	4 cut(s)	395, 427, 2739, 2771
AsiGI	ACCGGT	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	2355
Asp718I	GGTACC	1 cut(s)	2116
AspLEI	GCGC	2 cut(s)	783, 888
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	4 cut(s)	542, 1918, 1979, 2786
AvaII	GGWCC	1 cut(s)	656
BaeI	ACNNNNGTAYC	2 cut(s)	2459, 2492
BamHI	GGATCC	1 cut(s)	1568
BanI	GGYRCC	1 cut(s)	2116
BanII	GRGCYC	2 cut(s)	193, 293
BauI	CACGAG	1 cut(s)	2556
BbrPI	CACGTG	1 cut(s)	509
BbsI	GAAGAC	5 cut(s)	1310, 1714, 1855, 2190, 2374
Bbv12I	GWGCWC	4 cut(s)	193, 293, 1673, 2563
BbvCI	CCTCAGC	1 cut(s)	2010
BccI	CCATC	3 cut(s)	229, 1838, 2156
BceAI	ACGGC	2 cut(s)	43, 110
BcgI	CGANNNNNNTGC	2 cut(s)	842, 876
BciT130I	CCWGG	3 cut(s)	660, 1256, 1833
BclI	TGATCA	1 cut(s)	1369
BcoDI	GTCTC	2 cut(s)	594, 1634
BfaI	CTAG	2 cut(s)	737, 2799
BfmI	CTRYAG	4 cut(s)	651, 753, 1101, 2820
BfuAI	ACCTGC	1 cut(s)	1696
BglI	GCCNNNNNGGC	1 cut(s)	89
BglII	AGATCT	2 cut(s)	1632, 2198
BlpI	GCTNAGC	1 cut(s)	201
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	3 cut(s)	660, 1256, 1833
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	2 cut(s)	1570, 2118
BmrFI	CCNGG	3 cut(s)	660, 1256, 1833
BmrI	ACTGGG	1 cut(s)	2736
BmsI	GCATC	7 cut(s)	127, 734, 1033, 1508, 1594, 2601, 2710
BmuI	ACTGGG	1 cut(s)	2736
BpiI	GAAGAC	5 cut(s)	1310, 1714, 1855, 2190, 2374
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
BpmI	CTGGAG	2 cut(s)	345, 2156
Bpu10I	CCTNAGC	1 cut(s)	2010
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	3 cut(s)	277, 902, 2004
Bsa29I	ATCGAT	1 cut(s)	1376
BsaAI	YACGTR	1 cut(s)	509
BsaBI	GATNNNNATC	2 cut(s)	1368, 1580
BsaHI	GRCGYC	3 cut(s)	123, 2513, 2533
BsaI	GGTCTC	1 cut(s)	1634
BsaJI	CCNNGG	5 cut(s)	25, 87, 544, 1182, 1765
BsaWI	WCCGGW	3 cut(s)	272, 386, 1698
BsaXI	ACNNNNNCTCC	6 cut(s)	208, 238, 1761, 1791, 2345, 2375
Bsc4I	CCNNNNNNNGG	3 cut(s)	665, 1600, 1705
Bse118I	RCCGGY	2 cut(s)	272, 600
Bse1I	ACTGG	4 cut(s)	362, 2223, 2731, 2863
Bse3DI	GCAATG	8 cut(s)	611, 627, 747, 783, 1129, 1183, 1683, 2556
Bse8I	GATNNNNATC	2 cut(s)	1368, 1580
BseBI	CCWGG	3 cut(s)	660, 1256, 1833
BseCI	ATCGAT	1 cut(s)	1376
BseDI	CCNNGG	5 cut(s)	25, 87, 544, 1182, 1765
BseGI	GGATG	6 cut(s)	571, 725, 1048, 1609, 2227, 2303
BseJI	GATNNNNATC	2 cut(s)	1368, 1580
BseLI	CCNNNNNNNGG	3 cut(s)	665, 1600, 1705
BseMI	GCAATG	8 cut(s)	611, 627, 747, 783, 1129, 1183, 1683, 2556
BseNI	ACTGG	4 cut(s)	362, 2223, 2731, 2863
BseRI	GAGGAG	4 cut(s)	62, 183, 1017, 2537
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	1 cut(s)	2801
Bsh1285I	CGRYCG	2 cut(s)	103, 387
BshFI	GGCC	2 cut(s)	976, 2008
BshNI	GGYRCC	1 cut(s)	2116
BshTI	ACCGGT	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	1376
BsiEI	CGRYCG	2 cut(s)	103, 387
BsiHKAI	GWGCWC	4 cut(s)	193, 293, 1673, 2563
BsiSI	CCGG	5 cut(s)	273, 387, 563, 601, 1699
BslFI	GGGAC	2 cut(s)	2444, 2524
BslI	CCNNNNNNNGG	3 cut(s)	665, 1600, 1705
BsmAI	GTCTC	2 cut(s)	594, 1634
BsmFI	GGGAC	2 cut(s)	2444, 2524
BsmI	GAATGC	1 cut(s)	1595
BsnI	GGCC	2 cut(s)	976, 2008
Bso31I	GGTCTC	1 cut(s)	1634
Bsp1286I	GDGCHC	4 cut(s)	193, 293, 1673, 2563
Bsp143I	GATC	9 cut(s)	336, 447, 863, 1369, 1568, 1632, 1847, 2198, 2740
Bsp1720I	GCTNAGC	1 cut(s)	201
Bsp19I	CCATGG	2 cut(s)	544, 1765
BspANI	GGCC	2 cut(s)	976, 2008
BspDI	ATCGAT	1 cut(s)	1376
BspHI	TCATGA	1 cut(s)	2704
BspLI	GGNNCC	2 cut(s)	1570, 2118
BspMAI	CTGCAG	2 cut(s)	655, 1105
BspMI	ACCTGC	1 cut(s)	1696
BspPI	GGATC	3 cut(s)	1563, 1576, 1855
BspQI	GCTCTTC	2 cut(s)	99, 922
BspT107I	GGYRCC	1 cut(s)	2116
BspTNI	GGTCTC	1 cut(s)	1634
BsrBI	CCGCTC	1 cut(s)	2341
BsrDI	GCAATG	8 cut(s)	611, 627, 747, 783, 1129, 1183, 1683, 2556
BsrFI	RCCGGY	2 cut(s)	272, 600
BsrI	ACTGG	4 cut(s)	362, 2223, 2731, 2863
BssAI	RCCGGY	2 cut(s)	272, 600
BssECI	CCNNGG	5 cut(s)	25, 87, 544, 1182, 1765
BssMI	GATC	9 cut(s)	336, 447, 863, 1369, 1568, 1632, 1847, 2198, 2740
BssNI	GRCGYC	3 cut(s)	123, 2513, 2533
BssSI	CACGAG	1 cut(s)	2556
BssT1I	CCWWGG	4 cut(s)	87, 544, 1182, 1765
Bst2BI	CACGAG	1 cut(s)	2556
Bst2UI	CCWGG	3 cut(s)	660, 1256, 1833
Bst4CI	ACNGT	9 cut(s)	17, 104, 211, 588, 1001, 1112, 2472, 2628, 2694
Bst6I	CTCTTC	6 cut(s)	99, 922, 999, 1520, 1567, 1997
BstACI	GRCGYC	3 cut(s)	123, 2513, 2533
BstAPI	GCANNNNNTGC	1 cut(s)	1613
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	189, 560
BstDSI	CCRYGG	3 cut(s)	25, 544, 1765
BstF5I	GGATG	6 cut(s)	571, 725, 1048, 1609, 2227, 2303
BstHHI	GCGC	2 cut(s)	783, 888
BstKTI	GATC	9 cut(s)	339, 450, 866, 1372, 1571, 1635, 1850, 2201, 2743
BstMAI	GTCTC	2 cut(s)	594, 1634
BstMBI	GATC	9 cut(s)	336, 447, 863, 1369, 1568, 1632, 1847, 2198, 2740
BstMCI	CGRYCG	2 cut(s)	103, 387
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 184, 197, 472, 794, 803, 1613, 1808
BstNI	CCWGG	3 cut(s)	660, 1256, 1833
BstNSI	RCATGY	2 cut(s)	562, 872
BstSCI	CCNGG	3 cut(s)	658, 1254, 1831
BstSFI	CTRYAG	4 cut(s)	651, 753, 1101, 2820
BstV2I	GAAGAC	5 cut(s)	1310, 1714, 1855, 2190, 2374
BstX2I	RGATCY	3 cut(s)	1568, 1632, 2198
BstYI	RGATCY	3 cut(s)	1568, 1632, 2198
Bsu15I	ATCGAT	1 cut(s)	1376
BsuRI	GGCC	2 cut(s)	976, 2008
BsuTUI	ATCGAT	1 cut(s)	1376
BtgI	CCRYGG	3 cut(s)	25, 544, 1765
BtsCI	GGATG	6 cut(s)	571, 725, 1048, 1609, 2227, 2303
BtsIMutI	CAGTG	3 cut(s)	1006, 1984, 2109
BveI	ACCTGC	1 cut(s)	1696
Cac8I	GCNNGC	2 cut(s)	189, 560
CaiI	CAGNNNCTG	2 cut(s)	659, 1964
CciI	TCATGA	1 cut(s)	2704
CfoI	GCGC	2 cut(s)	783, 888
Cfr10I	RCCGGY	2 cut(s)	272, 600
Cfr13I	GGNCC	1 cut(s)	656
ClaI	ATCGAT	1 cut(s)	1376
CseI	GACGC	5 cut(s)	131, 449, 1035, 2034, 2541
Csp6I	GTAC	4 cut(s)	357, 571, 2117, 2212
CspAI	ACCGGT	1 cut(s)	272
CspCI	CAANNNNNGTGG	2 cut(s)	2233, 2268
CviQI	GTAC	4 cut(s)	357, 571, 2117, 2212
DpnI	GATC	9 cut(s)	338, 449, 865, 1371, 1570, 1634, 1849, 2200, 2742
DpnII	GATC	9 cut(s)	336, 447, 863, 1369, 1568, 1632, 1847, 2198, 2740
DraIII	CACNNNGTG	1 cut(s)	1613
Eam1104I	CTCTTC	6 cut(s)	99, 922, 999, 1520, 1567, 1997
EarI	CTCTTC	6 cut(s)	99, 922, 999, 1520, 1567, 1997
EciI	GGCGGA	2 cut(s)	45, 51
Ecl136II	GAGCTC	2 cut(s)	191, 291
Eco130I	CCWWGG	4 cut(s)	87, 544, 1182, 1765
Eco147I	AGGCCT	1 cut(s)	2008
Eco24I	GRGCYC	2 cut(s)	193, 293
Eco31I	GGTCTC	1 cut(s)	1634
Eco32I	GATATC	1 cut(s)	1162
Eco47I	GGWCC	1 cut(s)	656
Eco53kI	GAGCTC	2 cut(s)	191, 291
Eco57I	CTGAAG	3 cut(s)	1257, 2192, 2787
Eco72I	CACGTG	1 cut(s)	509
EcoICRI	GAGCTC	2 cut(s)	191, 291
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRI	GAATTC	2 cut(s)	390, 2483
EcoRII	CCWGG	3 cut(s)	658, 1254, 1831
EcoRV	GATATC	1 cut(s)	1162
EcoT14I	CCWWGG	4 cut(s)	87, 544, 1182, 1765
EcoT38I	GRGCYC	2 cut(s)	193, 293
ErhI	CCWWGG	4 cut(s)	87, 544, 1182, 1765
FalI	AAGNNNNNCTT	2 cut(s)	2286, 2318
FaqI	GGGAC	2 cut(s)	2444, 2524
FauI	CCCGC	1 cut(s)	2334
FbaI	TGATCA	1 cut(s)	1369
FblI	GTMKAC	1 cut(s)	1475
FokI	GGATG	6 cut(s)	578, 712, 1055, 1616, 2234, 2310
FriOI	GRGCYC	2 cut(s)	193, 293
FspBI	CTAG	2 cut(s)	737, 2799
GlaI	GCGC	2 cut(s)	782, 887
GsaI	CCCAGC	1 cut(s)	801
GsuI	CTGGAG	2 cut(s)	345, 2156
HaeIII	GGCC	2 cut(s)	976, 2008
HapII	CCGG	5 cut(s)	273, 387, 563, 601, 1699
HgaI	GACGC	5 cut(s)	131, 449, 1035, 2034, 2541
HhaI	GCGC	2 cut(s)	783, 888
Hin1I	GRCGYC	3 cut(s)	123, 2513, 2533
Hin6I	GCGC	2 cut(s)	781, 886
HinP1I	GCGC	2 cut(s)	781, 886
HincII	GTYRAC	4 cut(s)	1549, 1627, 2040, 2829
HindII	GTYRAC	4 cut(s)	1549, 1627, 2040, 2829
HindIII	AAGCTT	3 cut(s)	1083, 2316, 2814
HpaII	CCGG	5 cut(s)	273, 387, 563, 601, 1699
HphI	GGTGA	4 cut(s)	542, 1918, 1979, 2786
Hpy166II	GTNNAC	8 cut(s)	107, 327, 1476, 1549, 1627, 2040, 2068, 2829
Hpy8I	GTNNAC	8 cut(s)	107, 327, 1476, 1549, 1627, 2040, 2068, 2829
Hpy99I	CGWCG	4 cut(s)	125, 404, 407, 2156
HpyAV	CCTTC	7 cut(s)	1429, 1783, 1897, 2141, 2258, 2279, 2631
HpyCH4III	ACNGT	9 cut(s)	17, 104, 211, 588, 1001, 1112, 2472, 2628, 2694
HpyCH4IV	ACGT	3 cut(s)	508, 2143, 2513
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 184, 197, 472, 794, 803, 1613, 1808
HpySE526I	ACGT	3 cut(s)	508, 2143, 2513
Hsp92I	GRCGYC	3 cut(s)	123, 2513, 2533
HspAI	GCGC	2 cut(s)	781, 886
KpnI	GGTACC	1 cut(s)	2120
Ksp22I	TGATCA	1 cut(s)	1369
Kzo9I	GATC	9 cut(s)	336, 447, 863, 1369, 1568, 1632, 1847, 2198, 2740
LguI	GCTCTTC	2 cut(s)	99, 922
LmnI	GCTCC	5 cut(s)	49, 196, 1394, 2137, 2366
LweI	GCATC	7 cut(s)	127, 734, 1033, 1508, 1594, 2601, 2710
MaeI	CTAG	2 cut(s)	737, 2799
MaeII	ACGT	3 cut(s)	508, 2143, 2513
MaeIII	GTNAC	4 cut(s)	116, 623, 1069, 2389
MalI	GATC	9 cut(s)	338, 449, 865, 1371, 1570, 1634, 1849, 2200, 2742
MbiI	CCGCTC	1 cut(s)	2341
MboI	GATC	9 cut(s)	336, 447, 863, 1369, 1568, 1632, 1847, 2198, 2740
MfeI	CAATTG	2 cut(s)	2602, 2885
MflI	RGATCY	3 cut(s)	1568, 1632, 2198
MhlI	GDGCHC	4 cut(s)	193, 293, 1673, 2563
MlyI	GAGTC	6 cut(s)	33, 1016, 1090, 1449, 1869, 2548
MmeI	TCCRAC	2 cut(s)	753, 1339
MroXI	GAANNNNTTC	1 cut(s)	2355
MspA1I	CMGCKG	4 cut(s)	254, 809, 1961, 2090
MspI	CCGG	5 cut(s)	273, 387, 563, 601, 1699
MspR9I	CCNGG	3 cut(s)	660, 1256, 1833
MunI	CAATTG	2 cut(s)	2602, 2885
Mva1269I	GAATGC	1 cut(s)	1595
MvaI	CCWGG	3 cut(s)	660, 1256, 1833
MwoI	GCNNNNNNNGC	8 cut(s)	89, 184, 197, 472, 794, 803, 1613, 1808
NcoI	CCATGG	2 cut(s)	544, 1765
NdeII	GATC	9 cut(s)	336, 447, 863, 1369, 1568, 1632, 1847, 2198, 2740
NlaIV	GGNNCC	2 cut(s)	1570, 2118
NmeAIII	GCCGAG	2 cut(s)	356, 1883
NmuCI	GTSAC	1 cut(s)	623
NspI	RCATGY	2 cut(s)	562, 872
PaeI	GCATGC	1 cut(s)	562
PagI	TCATGA	1 cut(s)	2704
PceI	AGGCCT	1 cut(s)	2008
PciSI	GCTCTTC	2 cut(s)	99, 922
PcsI	WCGNNNNNNNCGW	2 cut(s)	411, 447
PctI	GAATGC	1 cut(s)	1595
PdmI	GAANNNNTTC	1 cut(s)	2355
PinAI	ACCGGT	1 cut(s)	272
PleI	GAGTC	6 cut(s)	33, 1015, 1090, 1449, 1868, 2548
PmaCI	CACGTG	1 cut(s)	509
PmlI	CACGTG	1 cut(s)	509
PpsI	GAGTC	6 cut(s)	33, 1015, 1090, 1449, 1868, 2548
Ppu21I	YACGTR	1 cut(s)	509
PpuMI	RGGWCCY	1 cut(s)	656
Psp124BI	GAGCTC	2 cut(s)	193, 293
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	3 cut(s)	658, 1254, 1831
PspCI	CACGTG	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	3 cut(s)	658, 1254, 1831
PspN4I	GGNNCC	2 cut(s)	1570, 2118
PspPI	GGNCC	1 cut(s)	656
PspPPI	RGGWCCY	1 cut(s)	656
PstI	CTGCAG	2 cut(s)	655, 1105
PstNI	CAGNNNCTG	2 cut(s)	659, 1964
PsuI	RGATCY	3 cut(s)	1568, 1632, 2198
PvuII	CAGCTG	2 cut(s)	1961, 2090
RsaI	GTAC	4 cut(s)	358, 572, 2118, 2213
RsaNI	GTAC	4 cut(s)	357, 571, 2117, 2212
SacI	GAGCTC	2 cut(s)	193, 293
SapI	GCTCTTC	2 cut(s)	99, 922
Sau3AI	GATC	9 cut(s)	336, 447, 863, 1369, 1568, 1632, 1847, 2198, 2740
Sau96I	GGNCC	1 cut(s)	656
ScaI	AGTACT	1 cut(s)	572
SchI	GAGTC	6 cut(s)	33, 1016, 1090, 1449, 1869, 2548
ScrFI	CCNGG	3 cut(s)	660, 1256, 1833
SduI	GDGCHC	4 cut(s)	193, 293, 1673, 2563
SfaNI	GCATC	7 cut(s)	127, 734, 1033, 1508, 1594, 2601, 2710
SfcI	CTRYAG	4 cut(s)	651, 753, 1101, 2820
SinI	GGWCC	1 cut(s)	656
SmlI	CTYRAG	3 cut(s)	292, 881, 2019
SmoI	CTYRAG	3 cut(s)	292, 881, 2019
SphI	GCATGC	1 cut(s)	562
SseBI	AGGCCT	1 cut(s)	2008
SspMI	CTAG	2 cut(s)	737, 2799
SstI	GAGCTC	2 cut(s)	193, 293
StuI	AGGCCT	1 cut(s)	2008
StyD4I	CCNGG	3 cut(s)	658, 1254, 1831
StyI	CCWWGG	4 cut(s)	87, 544, 1182, 1765
TaaI	ACNGT	9 cut(s)	17, 104, 211, 588, 1001, 1112, 2472, 2628, 2694
TaiI	ACGT	3 cut(s)	511, 2146, 2516
TaqI	TCGA	9 cut(s)	99, 414, 450, 862, 1376, 2154, 2563, 2656, 2758
TaqII	GACCGA	1 cut(s)	1461
TatI	WGTACW	2 cut(s)	356, 570
TauI	GCSGC	5 cut(s)	86, 383, 617, 812, 2261
TscAI	CASTG	3 cut(s)	1006, 1984, 2109
TseFI	GTSAC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	623
TspGWI	ACGGA	4 cut(s)	59, 1241, 1412, 2609
TspRI	CASTG	3 cut(s)	1006, 1984, 2109
VpaK11BI	GGWCC	1 cut(s)	656
XceI	RCATGY	2 cut(s)	562, 872
XmiI	GTMKAC	1 cut(s)	1475
XmnI	GAANNNNTTC	1 cut(s)	2355
XspI	CTAG	2 cut(s)	737, 2799
ZraI	GACGTC	1 cut(s)	2514
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.