MD10G1067500.v1.1

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0002209
Physical Location & Seq
Forward (+)
9318566 .. 9322555
3990 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1067500.v1.1.491

Sequence Viewer

Length: 1518 bp
ATGACGGAGAAAAGCGGCGACGGCGACGGCAGCGGTGGGGGTGATGGTGATGGTGGTCCAGCAGAGGAGGAGAAGAATAATAATAATGCTGATGGTGGTGTTCCACCAGAGGAAGAGAAGGAGAAGGAGAAAGAGAAGAATGGAGATCCAGAACTGCTGATCTGCTTGCTTCAACCTGCTCCCGCCGACTCCGATCCCGACTACATTGGCATCCGTCGCCTTCTACTCTCTCGCAAGCCCCAGTCCCCATTTCATCGCCGCCGAGATTGGAGATGCAATGGAAAAGGGTACGTCGCGATTCGAAATTACATCCGGCGGCCGAGGAATTTGGAGAGGATGCAGACTCCGAGCCTCCAGACCACTCCCGGAAACAGTGGGAGATGGATTCTACCTACAAGTCCGCTGTCCCTTTTGTACGACGTCGAAAGCTGGAGTCCTGGCAGGGACGTCCAGAGTGGCAGTCAACCTTCACCTCGCAGAAGTTTTGGCTCCAGTATAAGTGATAGTGACCGCCCACGTCCTCGGCGGGCAGAACCTGCGTACTCGTTTGTAGGAATGCATTGCATCTTTGATCAGTGCACAGCCTCTGTTACGGTTTTGAAGTTTGGGCACATGAGTTCTGATCTGCTTGCATATGGAGCATCAGATGGAACCTTGACAGTATGCACTGTTTCTGATCCACCTTCAATCCTCAAGCATCTGCATGGTCACTCCAAAGATGTTACAGACTTTGATTTTTCGTCGAACAATCAATACATTGCATCCTCATCAATGGATAAAACTGTACGAGTGTGGGAGATTTCAAAAGGCCTTTGTATTCGAGTAATATATGGAGTGTCTCCGCAACTGTGTATCCGTTTTCACCCTGTAAATAACAACTTTCTTTCAGCTGGCAATGCAGACAAAGAAGTTACGGTTTTCAATTTCAGCACTGGTAGGGTCATTCATAAAATATTCTTTGACAGTGAGGTTACCTCCATGGATTATGCTCACACTGGACAGCTCATTTTCTGTGGTGATGCGACGGGCTGTATATATTCTATAAGCATGAATTCTCACACAGGAATGTTGTCTCGCTCTCATCGTCACCGAAGTAGCACAAGGCGGAAATCTGCAGTCATAACTGTGCAGTACCGAAGTTTTTCTCTGTTGGCTCGGGGCCCTGTCTTGCTTACGTGTACTCAAGATGGAAGTTTATCTTTCTTCAGTGTTGCTCTGGAAATACAGGGTTATTTGACTCTCCGTTGCTCACTGAAACTAAATCCACGAATATACAGCATCCGGGCTTCCTTCTGTCCACTGCTTTCCCTTGAAAAAGGAGAATATATAGTTTCCGGAAGTGAGGATTCAAATGTCTACTTCTACGATTTAACCCGGCCAAAGCATACTTGTGTAAACAAGCTACAGGGTCATCGATTTCCGGTTATTGGTGTTGCTTGGAACCATGGAGAGAACTTGTTAGCATCATCTGATTTCTACGGAACGGTTATTGTATGGAAGAGATCAAAAACAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

506

Amino Acids

56.0

Weight (kDa)

8.68

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 187 - 307 2.8e-16 WDR3 first beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 189 - 346 4.6e-08 MABP1/WDR62 second WD40 domain
Beta-prop_EML_2 PF23414 191 - 270 1.1e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 192 - 500 1.1e-34 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 192 - 277 2.9e-12 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 196 - 340 7.2e-15 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 196 - 310 1.4e-12 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 196 - 346 5.3e-15 Prp19 WD40 domain
WDR55 PF24796 205 - 268 3.4e-06 WDR55
Beta-prop_THOC3 PF25174 206 - 377 3.3e-21 THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 230 - 319 1.7e-09 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 231 - 265 1.5e-10 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 240 - 351 6.8e-08 WDR3 second beta-propeller domain
WDR90_beta-prop_4th PF23342 241 - 381 3.4e-06 WDR90, 4th beta-propeller
Beta-prop_RIG_2nd PF23775 252 - 501 2.8e-07 RIG second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 252 - 390 2.9e-06 WDR90/POC16, second beta-propeller
Beta-prop_EML_2 PF23414 286 - 409 2.4e-06 Echinoderm microtubule-associated protein second beta-propeller
KNTC1_N PF24506 300 - 406 6.7e-06 KNTC1, N-terminal
WD40_WDHD1_1st PF24817 438 - 502 1.5e-06 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 439 - 503 2.1e-09 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 423, 450
Acc36I ACCTGC 2 cut(s) 184, 544
AccI GTMKAC 1 cut(s) 1356
AccII CGCG 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 1334
AclWI GGATC 3 cut(s) 140, 188, 671
AcoI YGGCCR 2 cut(s) 317, 1376
AcsI RAATTY 2 cut(s) 325, 1051
AcuI CTGAAG 1 cut(s) 1189
AcyI GRCGYC 2 cut(s) 420, 447
AfaI GTAC 6 cut(s) 290, 416, 542, 786, 1133, 1180
AfiI CCNNNNNNNGG 1 cut(s) 1427
AflIII ACRYGT 1 cut(s) 1175
AgsI TTSAA 7 cut(s) 173, 601, 687, 804, 922, 1313, 1350
AjiI CACGTC 1 cut(s) 518
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 4 cut(s) 429, 890, 1003, 1402
AluI AGCT 4 cut(s) 429, 890, 1003, 1402
Alw21I GWGCWC 1 cut(s) 581
Alw26I GTCTC 2 cut(s) 843, 1077
Alw44I GTGCAC 1 cut(s) 577
AlwI GGATC 3 cut(s) 140, 188, 671
AlwNI CAGNNNCTG 2 cut(s) 536, 587
Ama87I CYCGRG 1 cut(s) 1155
Aor13HI TCCGGA 1 cut(s) 1334
AoxI GGCC 4 cut(s) 317, 808, 1159, 1376
ApaI GGGCCC 1 cut(s) 1163
ApaLI GTGCAC 1 cut(s) 577
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 2 cut(s) 325, 1051
Asp700I GAANNNNTTC 1 cut(s) 1141
AspS9I GGNCC 3 cut(s) 56, 1159, 1160
AsuC2I CCSGG 3 cut(s) 366, 1283, 1375
AsuHPI GGTGA 6 cut(s) 53, 59, 462, 854, 1028, 1079
AsuII TTCGAA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 1155
AvaII GGWCC 1 cut(s) 56
BaeGI GKGCMC 3 cut(s) 581, 612, 1163
BanII GRGCYC 1 cut(s) 1163
Bbv12I GWGCWC 1 cut(s) 581
BbvI GCAGC 1 cut(s) 42
BccI CCATC 6 cut(s) 38, 44, 86, 375, 641, 1181
BceAI ACGGC 2 cut(s) 37, 43
BciT130I CCWGG 1 cut(s) 438
BciVI GTATCC 1 cut(s) 863
BclI TGATCA 1 cut(s) 571
BcnI CCSGG 3 cut(s) 366, 1283, 1375
BcoDI GTCTC 2 cut(s) 843, 1077
BfmI CTRYAG 2 cut(s) 1113, 1403
BfuAI ACCTGC 2 cut(s) 184, 544
BfuI GTATCC 1 cut(s) 863
BisI GCNGC 4 cut(s) 16, 31, 259, 317
BlsI GCNGC 4 cut(s) 17, 32, 260, 318
Bme1390I CCNGG 4 cut(s) 366, 438, 1283, 1375
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 1155
BmgBI CACGTC 1 cut(s) 518
BmgT120I GGNCC 3 cut(s) 56, 1159, 1160
BmiI GGNNCC 5 cut(s) 490, 652, 1160, 1161, 1442
BmrFI CCNGG 4 cut(s) 366, 438, 1283, 1375
BmrI ACTGGG 1 cut(s) 235
BmuI ACTGGG 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 959, 991
BpmI CTGGAG 3 cut(s) 338, 451, 475
Bpu14I TTCGAA 1 cut(s) 301
BpuEI CTTGAG 2 cut(s) 677, 1167
BpuMI CCSGG 3 cut(s) 366, 1283, 1375
Bsa29I ATCGAT 1 cut(s) 1414
BsaAI YACGTR 1 cut(s) 1176
BsaHI GRCGYC 2 cut(s) 420, 447
BsaJI CCNNGG 4 cut(s) 320, 521, 978, 1444
BsaWI WCCGGW 2 cut(s) 1334, 1420
Bsc4I CCNNNNNNNGG 1 cut(s) 1427
Bse1I ACTGG 4 cut(s) 241, 492, 937, 1000
Bse3DI GCAATG 4 cut(s) 283, 559, 756, 901
BseAI TCCGGA 1 cut(s) 1334
BseBI CCWGG 1 cut(s) 438
BseCI ATCGAT 1 cut(s) 1414
BseDI CCNNGG 4 cut(s) 320, 521, 978, 1444
BseGI GGATG 5 cut(s) 210, 309, 342, 761, 1278
BseLI CCNNNNNNNGG 1 cut(s) 1427
BseMI GCAATG 4 cut(s) 283, 559, 756, 901
BseNI ACTGG 4 cut(s) 241, 492, 937, 1000
BseRI GAGGAG 2 cut(s) 80, 83
BseSI GKGCMC 3 cut(s) 581, 612, 1163
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 1148
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 4 cut(s) 319, 810, 1161, 1378
BshVI ATCGAT 1 cut(s) 1414
BsiEI CGRYCG 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 581
BsiHKCI CYCGRG 1 cut(s) 1155
BsiSI CCGG 6 cut(s) 313, 366, 1282, 1335, 1375, 1421
BslFI GGGAC 3 cut(s) 229, 391, 458
BslI CCNNNNNNNGG 1 cut(s) 1427
BsmAI GTCTC 2 cut(s) 843, 1077
BsmFI GGGAC 3 cut(s) 229, 391, 458
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 4 cut(s) 319, 810, 1161, 1378
BsoBI CYCGRG 1 cut(s) 1155
Bsp119I TTCGAA 1 cut(s) 301
Bsp120I GGGCCC 1 cut(s) 1159
Bsp1286I GDGCHC 3 cut(s) 581, 612, 1163
Bsp13I TCCGGA 1 cut(s) 1334
Bsp143I GATC 7 cut(s) 145, 159, 193, 571, 622, 676, 1502
Bsp19I CCATGG 2 cut(s) 978, 1444
Bsp68I TCGCGA 1 cut(s) 296
BspANI GGCC 4 cut(s) 319, 810, 1161, 1378
BspDI ATCGAT 1 cut(s) 1414
BspEI TCCGGA 1 cut(s) 1334
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 5 cut(s) 490, 652, 1160, 1161, 1442
BspMAI CTGCAG 1 cut(s) 1117
BspMI ACCTGC 2 cut(s) 184, 544
BspPI GGATC 3 cut(s) 140, 188, 671
BspT104I TTCGAA 1 cut(s) 301
BsrDI GCAATG 4 cut(s) 283, 559, 756, 901
BsrI ACTGG 4 cut(s) 241, 492, 937, 1000
BssECI CCNNGG 4 cut(s) 320, 521, 978, 1444
BssMI GATC 7 cut(s) 145, 159, 193, 571, 622, 676, 1502
BssNI GRCGYC 2 cut(s) 420, 447
BssT1I CCWWGG 2 cut(s) 978, 1444
Bst2UI CCWGG 1 cut(s) 438
Bst6I CTCTTC 2 cut(s) 108, 1493
BstACI GRCGYC 2 cut(s) 420, 447
BstAPI GCANNNNNTGC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 1176
BstBI TTCGAA 1 cut(s) 301
BstC8I GCNNGC 5 cut(s) 167, 236, 528, 630, 892
BstDSI CCRYGG 2 cut(s) 978, 1444
BstEII GGTNACC 1 cut(s) 970
BstF5I GGATG 5 cut(s) 210, 309, 342, 761, 1278
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 7 cut(s) 148, 162, 196, 574, 625, 679, 1505
BstMAI GTCTC 2 cut(s) 843, 1077
BstMBI GATC 7 cut(s) 145, 159, 193, 571, 622, 676, 1502
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 6 cut(s) 21, 30, 216, 536, 638, 896
BstNI CCWGG 1 cut(s) 438
BstPI GGTNACC 1 cut(s) 970
BstSCI CCNGG 4 cut(s) 364, 436, 1281, 1373
BstSFI CTRYAG 2 cut(s) 1113, 1403
BstSLI GKGCMC 3 cut(s) 581, 612, 1163
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BstZI CGGCCG 1 cut(s) 317
Bsu15I ATCGAT 1 cut(s) 1414
BsuI GTATCC 1 cut(s) 863
BsuRI GGCC 4 cut(s) 319, 810, 1161, 1378
BsuTUI ATCGAT 1 cut(s) 1414
BtgI CCRYGG 2 cut(s) 978, 1444
BtgZI GCGATG 1 cut(s) 239
BtrI CACGTC 1 cut(s) 518
BtsCI GGATG 5 cut(s) 210, 309, 342, 761, 1278
BtsI GCAGTG 1 cut(s) 1298
BtsIMutI CAGTG 9 cut(s) 379, 581, 666, 930, 970, 993, 1213, 1250, 1298
BtuMI TCGCGA 1 cut(s) 296
BveI ACCTGC 2 cut(s) 184, 544
Cac8I GCNNGC 5 cut(s) 167, 236, 528, 630, 892
CaiI CAGNNNCTG 2 cut(s) 536, 587
Cfr13I GGNCC 3 cut(s) 56, 1159, 1160
ClaI ATCGAT 1 cut(s) 1414
Csp6I GTAC 6 cut(s) 289, 415, 541, 785, 1132, 1179
CviAII CATG 5 cut(s) 613, 704, 979, 1048, 1445
CviQI GTAC 6 cut(s) 289, 415, 541, 785, 1132, 1179
DpnI GATC 7 cut(s) 147, 161, 195, 573, 624, 678, 1504
DpnII GATC 7 cut(s) 145, 159, 193, 571, 622, 676, 1502
EaeI YGGCCR 2 cut(s) 317, 1376
EagI CGGCCG 1 cut(s) 317
Eam1104I CTCTTC 2 cut(s) 108, 1493
EarI CTCTTC 2 cut(s) 108, 1493
EciI GGCGGA 1 cut(s) 1120
EclXI CGGCCG 1 cut(s) 317
Eco130I CCWWGG 2 cut(s) 978, 1444
Eco147I AGGCCT 1 cut(s) 810
Eco24I GRGCYC 1 cut(s) 1163
Eco47I GGWCC 1 cut(s) 56
Eco52I CGGCCG 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 1189
Eco88I CYCGRG 1 cut(s) 1155
Eco91I GGTNACC 1 cut(s) 970
EcoO109I RGGNCCY 2 cut(s) 1159, 1160
EcoO65I GGTNACC 1 cut(s) 970
EcoRI GAATTC 1 cut(s) 1051
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 2 cut(s) 978, 1444
EcoT22I ATGCAT 1 cut(s) 561
EcoT38I GRGCYC 1 cut(s) 1163
ErhI CCWWGG 2 cut(s) 978, 1444
FaeI CATG 5 cut(s) 616, 707, 982, 1051, 1448
FalI AAGNNNNNCTT 2 cut(s) 1183, 1215
FaqI GGGAC 3 cut(s) 229, 391, 458
FatI CATG 5 cut(s) 612, 703, 978, 1047, 1444
FauI CCCGC 2 cut(s) 190, 519
FauNDI CATATG 1 cut(s) 634
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 1 cut(s) 1356
Fnu4HI GCNGC 4 cut(s) 16, 31, 259, 317
FokI GGATG 5 cut(s) 197, 296, 349, 748, 1265
FriOI GRGCYC 1 cut(s) 1163
Fsp4HI GCNGC 4 cut(s) 16, 31, 259, 317
GluI GCNGC 4 cut(s) 16, 31, 259, 317
GsuI CTGGAG 3 cut(s) 338, 451, 475
HaeIII GGCC 4 cut(s) 319, 810, 1161, 1378
HapII CCGG 6 cut(s) 313, 366, 1282, 1335, 1375, 1421
Hin1I GRCGYC 2 cut(s) 420, 447
Hin1II CATG 5 cut(s) 616, 707, 982, 1051, 1448
HincII GTYRAC 1 cut(s) 464
HindII GTYRAC 1 cut(s) 464
HinfI GANTC 7 cut(s) 188, 298, 343, 385, 433, 1237, 1346
HpaII CCGG 6 cut(s) 313, 366, 1282, 1335, 1375, 1421
HphI GGTGA 6 cut(s) 53, 59, 462, 854, 1028, 1079
Hpy166II GTNNAC 6 cut(s) 464, 579, 1179, 1298, 1357, 1396
Hpy188I TCNGA 6 cut(s) 193, 348, 622, 646, 676, 1471
Hpy188III TCNNGA 8 cut(s) 149, 197, 295, 355, 451, 1184, 1217, 1335
Hpy8I GTNNAC 6 cut(s) 464, 579, 1179, 1298, 1357, 1396
Hpy99I CGWCG 8 cut(s) 23, 29, 219, 296, 422, 425, 745, 1027
HpyAV CCTTC 6 cut(s) 112, 118, 230, 477, 693, 1300
HpyCH4IV ACGT 5 cut(s) 291, 420, 447, 517, 1175
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 30, 216, 536, 638, 896
HpySE526I ACGT 5 cut(s) 291, 420, 447, 517, 1175
Hsp92I GRCGYC 2 cut(s) 420, 447
Hsp92II CATG 5 cut(s) 616, 707, 982, 1051, 1448
Kpn2I TCCGGA 1 cut(s) 1334
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 7 cut(s) 145, 159, 193, 571, 622, 676, 1502
LmnI GCTCC 3 cut(s) 184, 494, 638
Lsp1109I GCAGC 1 cut(s) 42
MaeII ACGT 5 cut(s) 291, 420, 447, 517, 1175
MaeIII GTNAC 7 cut(s) 506, 589, 707, 721, 910, 970, 1085
MalI GATC 7 cut(s) 147, 161, 195, 573, 624, 678, 1504
MboI GATC 7 cut(s) 145, 159, 193, 571, 622, 676, 1502
MboII GAAGA 5 cut(s) 85, 125, 148, 1195, 1510
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 3 cut(s) 581, 612, 1163
MluCI AATT 4 cut(s) 304, 325, 922, 1051
MlyI GAGTC 4 cut(s) 182, 337, 442, 1231
Mph1103I ATGCAT 1 cut(s) 561
MroI TCCGGA 1 cut(s) 1334
MroXI GAANNNNTTC 1 cut(s) 1141
MseI TTAA 2 cut(s) 1370, 1516
MslI CAYNNNNRTG 4 cut(s) 702, 1064, 1124, 1389
MspA1I CMGCKG 3 cut(s) 33, 403, 890
MspI CCGG 6 cut(s) 313, 366, 1282, 1335, 1375, 1421
MspR9I CCNGG 4 cut(s) 366, 438, 1283, 1375
Mva1269I GAATGC 1 cut(s) 561
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 6 cut(s) 21, 30, 216, 536, 638, 896
NciI CCSGG 3 cut(s) 366, 1283, 1375
NcoI CCATGG 2 cut(s) 978, 1444
NdeI CATATG 1 cut(s) 634
NdeII GATC 7 cut(s) 145, 159, 193, 571, 622, 676, 1502
NlaIII CATG 5 cut(s) 616, 707, 982, 1051, 1448
NlaIV GGNNCC 5 cut(s) 490, 652, 1160, 1161, 1442
NmeAIII GCCGAG 3 cut(s) 287, 345, 502
NmuCI GTSAC 3 cut(s) 506, 707, 1085
NruI TCGCGA 1 cut(s) 296
NsiI ATGCAT 1 cut(s) 561
NspV TTCGAA 1 cut(s) 301
PceI AGGCCT 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 1081
PctI GAATGC 1 cut(s) 561
PdmI GAANNNNTTC 1 cut(s) 1141
PfeI GAWTC 3 cut(s) 298, 385, 1346
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 4 cut(s) 17, 32, 260, 318
PleI GAGTC 4 cut(s) 182, 337, 441, 1231
PpsI GAGTC 4 cut(s) 182, 337, 441, 1231
Ppu21I YACGTR 1 cut(s) 1176
Psp6I CCWGG 1 cut(s) 436
PspEI GGTNACC 1 cut(s) 970
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 5 cut(s) 490, 652, 1160, 1161, 1442
PspOMI GGGCCC 1 cut(s) 1159
PspPI GGNCC 3 cut(s) 56, 1159, 1160
PsrI GAACNNNNNNTAC 2 cut(s) 737, 769
PstI CTGCAG 1 cut(s) 1117
PstNI CAGNNNCTG 2 cut(s) 536, 587
PsuI RGATCY 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 890
RruI TCGCGA 1 cut(s) 296
RsaI GTAC 6 cut(s) 290, 416, 542, 786, 1133, 1180
RsaNI GTAC 6 cut(s) 289, 415, 541, 785, 1132, 1179
RseI CAYNNNNRTG 4 cut(s) 702, 1064, 1124, 1389
SaqAI TTAA 2 cut(s) 1370, 1516
SatI GCNGC 4 cut(s) 16, 31, 259, 317
Sau3AI GATC 7 cut(s) 145, 159, 193, 571, 622, 676, 1502
Sau96I GGNCC 3 cut(s) 56, 1159, 1160
SchI GAGTC 4 cut(s) 182, 337, 442, 1231
ScrFI CCNGG 4 cut(s) 366, 438, 1283, 1375
SduI GDGCHC 3 cut(s) 581, 612, 1163
SfcI CTRYAG 2 cut(s) 1113, 1403
SfuI TTCGAA 1 cut(s) 301
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 4 cut(s) 702, 1064, 1124, 1389
SmlI CTYRAG 2 cut(s) 692, 1182
SmoI CTYRAG 2 cut(s) 692, 1182
Sse9I AATT 4 cut(s) 304, 325, 922, 1051
SseBI AGGCCT 1 cut(s) 810
SspI AATATT 1 cut(s) 954
StuI AGGCCT 1 cut(s) 810
StyD4I CCNGG 4 cut(s) 364, 436, 1281, 1373
StyI CCWWGG 2 cut(s) 978, 1444
TaiI ACGT 5 cut(s) 294, 423, 450, 520, 1178
TaqI TCGA 5 cut(s) 301, 423, 743, 820, 1414
TasI AATT 4 cut(s) 304, 325, 922, 1051
TatI WGTACW 1 cut(s) 1178
TauI GCSGC 3 cut(s) 18, 261, 319
TfiI GAWTC 3 cut(s) 298, 385, 1346
Tru1I TTAA 2 cut(s) 1370, 1516
Tru9I TTAA 2 cut(s) 1370, 1516
TscAI CASTG 9 cut(s) 379, 581, 673, 937, 970, 1000, 1213, 1257, 1305
TseFI GTSAC 3 cut(s) 506, 707, 1085
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 3 cut(s) 506, 707, 1085
TspDTI ATGAA 3 cut(s) 242, 935, 1064
TspGWI ACGGA 5 cut(s) 20, 203, 845, 1232, 1494
TspRI CASTG 9 cut(s) 379, 581, 673, 937, 970, 1000, 1213, 1257, 1305
VneI GTGCAC 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 2 cut(s) 325, 1051
XmiI GTMKAC 1 cut(s) 1356
XmnI GAANNNNTTC 1 cut(s) 1141
ZraI GACGTC 2 cut(s) 421, 448
Zsp2I ATGCAT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.