Rh5CG368800

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002209
Physical Location & Seq
Forward (+)
46870281 .. 46875746
5466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG368800.1

Sequence Viewer

Length: 684 bp
ATGTCGAGAGCTGGACTCCTGGCAGGGTATGTGCAATGCAGCCTCGGTTTTGGTTTTCAAGTTTCTTTAATCTTCGATGTGCATAATGGCAGTCAACCTTCATCTCGTAGAAGTTTTCGCTCGAGTACTAGTGATAATGACCGCCTGCGTCAACGGGGTGAACAACCTACATACTCTTTTGTAGGAATGCATTGCATCTTTGATCAGTGCAGAGCCTCGGTTACTGTTTTGAAGTTTGGGCACATGAGCTCAGATCTGCTTGCGTATGGAGCATCAGATGGAACCTTGACAGTATGCACTGTCTCTGATCCTCCTTCAATTCTCAAGCATCTGAATGGTCACTCCAAAGATGTTACAGTGGATGCATATTTCTTTGGTAAGATTTTGTTTCCTGCATCATCATCTCCACTTGGTTATGGGACCAACGCTATTTTCCCGGTCTTTGTTCTAAACACCATGTCTTGTTTATTTTCAAACTTTGATTTCTCGTCAAACAATCAGTACATTGCATCCTCATCGTTGGATAAAACTGTGAGAGTATGGGAGATTTCAAAAGGCCTATGCATAAGAGTAATATATGGAGTTTCTCCACAACTGTGTATTCGTTTTCACCCTGTAAATAACAACTTCCTTTCAGTTGGCAATGCAGACAAAGAAATTACGTACTGGGAGGACCATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

227

Amino Acids

25.06

Weight (kDa)

7.63

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 65 - 224 6.6e-06 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 73 - 224 4.6e-07 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 158 - 224 4.6e-09 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 159 - 224 2.9e-07 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 164 - 224 9.5e-08 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AclWI GGATC 1 cut(s) 302
AfaI GTAC 3 cut(s) 127, 503, 665
AgsI TTSAA 5 cut(s) 59, 232, 318, 474, 552
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AleI CACNNNNGTG 1 cut(s) 595
AluBI AGCT 2 cut(s) 11, 249
AluI AGCT 2 cut(s) 11, 249
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 121
AoxI GGCC 1 cut(s) 556
ApeKI GCWGC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 420, 673
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 170, 602
AvaI CYCGRG 1 cut(s) 121
AvaII GGWCC 2 cut(s) 420, 673
BaeGI GKGCMC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BciT130I CCWGG 1 cut(s) 20
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 1 cut(s) 307
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 1 cut(s) 129
BglII AGATCT 1 cut(s) 253
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmcAI AGTACT 1 cut(s) 127
Bme1390I CCNGG 2 cut(s) 20, 437
Bme18I GGWCC 2 cut(s) 420, 673
BmeT110I CYCGRG 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 420, 673
BmiI GGNNCC 2 cut(s) 283, 421
BmrFI CCNGG 2 cut(s) 20, 437
BmrI ACTGGG 1 cut(s) 676
BmsI GCATC 6 cut(s) 204, 281, 337, 352, 404, 518
BmuI ACTGGG 1 cut(s) 676
BplI GAGNNNNNCTC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 43, 216
Bse1I ACTGG 1 cut(s) 671
Bse3DI GCAATG 4 cut(s) 41, 190, 504, 649
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 43, 216
BseGI GGATG 2 cut(s) 367, 509
BseMI GCAATG 4 cut(s) 41, 190, 504, 649
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 671
BseSI GKGCMC 1 cut(s) 243
BseXI GCAGC 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 433
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 433
BsmI GAATGC 1 cut(s) 192
BsnI GGCC 1 cut(s) 558
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 243, 251
Bsp143I GATC 3 cut(s) 202, 253, 307
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 558
BspCNI CTCAG 1 cut(s) 263
BspLI GGNNCC 2 cut(s) 283, 421
BspPI GGATC 1 cut(s) 302
BsrDI GCAATG 4 cut(s) 41, 190, 504, 649
BsrI ACTGG 1 cut(s) 671
BssECI CCNNGG 2 cut(s) 43, 216
BssMI GATC 3 cut(s) 202, 253, 307
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 6 cut(s) 226, 292, 301, 358, 532, 597
BstBAI YACGTR 1 cut(s) 663
BstC8I GCNNGC 2 cut(s) 146, 261
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 367, 509
BstKTI GATC 3 cut(s) 205, 256, 310
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 3 cut(s) 202, 253, 307
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 18, 435
BstSLI GKGCMC 1 cut(s) 243
BstSNI TACGTA 1 cut(s) 663
BstV1I GCAGC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 1 cut(s) 558
BtsCI GGATG 2 cut(s) 367, 509
BtsIMutI CAGTG 3 cut(s) 212, 297, 363
Cac8I GCNNGC 2 cut(s) 146, 261
Cfr13I GGNCC 2 cut(s) 420, 673
CseI GACGC 1 cut(s) 137
Csp6I GTAC 3 cut(s) 126, 502, 664
CviAII CATG 2 cut(s) 244, 457
CviJI RGCY 5 cut(s) 11, 42, 215, 249, 558
CviKI_1 RGCY 5 cut(s) 11, 42, 215, 249, 558
CviQI GTAC 3 cut(s) 126, 502, 664
DdeI CTNAG 1 cut(s) 250
DpnI GATC 3 cut(s) 204, 255, 309
DpnII GATC 3 cut(s) 202, 253, 307
Ecl136II GAGCTC 1 cut(s) 249
Eco105I TACGTA 1 cut(s) 663
Eco147I AGGCCT 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 420, 673
Eco53kI GAGCTC 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 18
EcoT22I ATGCAT 3 cut(s) 192, 367, 566
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 2 cut(s) 247, 460
FaqI GGGAC 1 cut(s) 433
FatI CATG 2 cut(s) 243, 456
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 2 cut(s) 374, 496
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 129
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 558
HapII CCGG 1 cut(s) 437
HgaI GACGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 247, 460
HincII GTYRAC 2 cut(s) 95, 152
HindII GTYRAC 2 cut(s) 95, 152
HinfI GANTC 1 cut(s) 15
HpaII CCGG 1 cut(s) 437
HphI GGTGA 2 cut(s) 170, 602
Hpy166II GTNNAC 3 cut(s) 95, 152, 161
Hpy188I TCNGA 4 cut(s) 253, 277, 307, 333
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 3 cut(s) 95, 152, 161
HpyAV CCTTC 2 cut(s) 108, 324
HpyCH4III ACNGT 6 cut(s) 226, 292, 301, 358, 532, 597
HpyCH4IV ACGT 1 cut(s) 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 1 cut(s) 662
Hsp92II CATG 2 cut(s) 247, 460
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 202, 253, 307
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 8 cut(s) 5, 9, 32, 158, 405, 450, 627, 652
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 6 cut(s) 204, 281, 337, 352, 404, 518
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 662
MaeIII GTNAC 3 cut(s) 220, 338, 352
MalI GATC 3 cut(s) 204, 255, 309
MboI GATC 3 cut(s) 202, 253, 307
MboII GAAGA 1 cut(s) 64
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 243, 251
MluCI AATT 2 cut(s) 318, 657
MlyI GAGTC 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 5 cut(s) 53, 226, 321, 523, 664
Mph1103I ATGCAT 3 cut(s) 192, 367, 566
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 2 cut(s) 333, 595
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 2 cut(s) 20, 437
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 437
NdeII GATC 3 cut(s) 202, 253, 307
NlaIII CATG 2 cut(s) 247, 460
NlaIV GGNNCC 2 cut(s) 283, 421
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 3 cut(s) 192, 367, 566
OliI CACNNNNGTG 1 cut(s) 595
PaeR7I CTCGAG 1 cut(s) 121
PceI AGGCCT 1 cut(s) 558
PctI GAATGC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 9
Ppu21I YACGTR 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 283, 421
PspPI GGNCC 2 cut(s) 420, 673
PspXI VCTCGAGB 1 cut(s) 121
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 3 cut(s) 127, 503, 665
RsaNI GTAC 3 cut(s) 126, 502, 664
RseI CAYNNNNRTG 2 cut(s) 333, 595
SacI GAGCTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 3 cut(s) 202, 253, 307
Sau96I GGNCC 2 cut(s) 420, 673
ScaI AGTACT 1 cut(s) 127
SchI GAGTC 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 20, 437
SduI GDGCHC 2 cut(s) 243, 251
SetI ASST 6 cut(s) 13, 100, 169, 251, 287, 665
SfaNI GCATC 6 cut(s) 204, 281, 337, 352, 404, 518
Sfr274I CTCGAG 1 cut(s) 121
SinI GGWCC 2 cut(s) 420, 673
SlaI CTCGAG 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 333, 595
SmlI CTYRAG 2 cut(s) 121, 323
SmoI CTYRAG 2 cut(s) 121, 323
SnaBI TACGTA 1 cut(s) 663
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 2 cut(s) 318, 657
SseBI AGGCCT 1 cut(s) 558
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 129
SstI GAGCTC 1 cut(s) 251
StuI AGGCCT 1 cut(s) 558
StyD4I CCNGG 2 cut(s) 18, 435
TaaI ACNGT 6 cut(s) 226, 292, 301, 358, 532, 597
TaiI ACGT 1 cut(s) 665
TaqI TCGA 3 cut(s) 5, 75, 122
TasI AATT 2 cut(s) 318, 657
TatI WGTACW 2 cut(s) 125, 501
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 3 cut(s) 212, 304, 363
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 90, 669
TspRI CASTG 3 cut(s) 212, 304, 363
VpaK11BI GGWCC 2 cut(s) 420, 673
XhoI CTCGAG 1 cut(s) 121
XspI CTAG 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 127
Zsp2I ATGCAT 3 cut(s) 192, 367, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.