Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002209

Physical Location & Seq

Genomic Coordinates Reverse (-)

24274651 .. 24275046

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0232800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGAGAGTACACTATCCTCAAGCTCGACCATCGCCTCAAGAACCTGGAACTCACCGCTAATCTCTCGACTGAGGCGTACGTGGCCGCCATTGAAGATCTCCGAGTAAACTTGGCTGCCTTGGGAAGGAGATACACGGACGCCGAGGTCATTGAGGTCGTCAAGAACAATATAGCTGGGGGACTTCGTTTTGCAGTTTTCGCCGGAGAAGCTCAAGCTGAAACTCCTCCTCCTCCTCCCATGGAGTTGCACGACTTCTATGTGAAGCTTCTTGATGAAAATTTCAGGCTTTCCAAGATGAGGTTCCACCCCCTGGCTCTCTCTATGCCTAAAGGTACACTCTTGATATTCATTCTGATTAGGATTTTAACTGGAGCATCTAATGTTAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

131

Amino Acids

14.76

Weight (kDa)

6.84

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16405
fragaria_vesca	FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910
malus_domestica	MD05G1059400.v1.1 MD10G1067500.v1.1
prunus_persica	Prupe.8G089300_v2.0.a1
pyrus_communis	pycom05g05080 pycom10g05340
rosa_chinensis	RchiOBHm_Chr6g0266641 RchiOBHm_Chr6g0266811
rosa_laevigata	RLG00000013952 RLG00000013956 RLG00000013961 RLG00000014043 RLG00000014087 RLG00000014092
rosa_multiflora	Rmu_sc0006413.1_g000019
rosa_roxburghii	Rroxscaffold_7G00195140 Rroxscaffold_7G00201600
rosa_rugosa	Rorug05G0034500 Rorug05G0034600 Rorug05G0232800 Rorug06G0026800 Rorug07G0138600
rosa_samantha	Rh5CG368800 Rh6AG147200 Rh6AG147900 Rh6AG148100 Rh6BG147400 Rh6BG148600 Rh6BG149000 Rh6CG143000 Rh6DG132000 Rh6DG132800
rosa_wichuraiana	Rw6G012620 Rw6G012770 Rw6G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	313
AciI	CCGC	2 cut(s)	57, 87
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	3 cut(s)	11, 80, 337
AfiI	CCNNNNNNNGG	3 cut(s)	126, 300, 313
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	45, 312
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	5 cut(s)	25, 176, 212, 218, 268
AluI	AGCT	5 cut(s)	25, 176, 212, 218, 268
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	47, 314
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	2 cut(s)	87, 117
BlsI	GCNGC	2 cut(s)	88, 118
Bme1390I	CCNGG	2 cut(s)	47, 314
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	2 cut(s)	47, 314
BmsI	GCATC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	393
BpuEI	CTTGAG	3 cut(s)	5, 23, 198
BsaAI	YACGTR	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	120, 144, 240, 312
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 300, 313
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	2 cut(s)	47, 314
BseDI	CCNNGG	4 cut(s)	120, 144, 240, 312
BseLI	CCNNNNNNNGG	3 cut(s)	126, 300, 313
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	4 cut(s)	216, 219, 222, 225
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	204
BsiWI	CGTACG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	126, 300, 313
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	2 cut(s)	57, 87
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	4 cut(s)	120, 144, 240, 312
BssMI	GATC	1 cut(s)	97
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	2 cut(s)	120, 240
Bst2UI	CCWGG	2 cut(s)	47, 314
BstACI	GRCGYC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 200, 209
BstNI	CCWGG	2 cut(s)	47, 314
BstSCI	CCNGG	2 cut(s)	45, 312
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	17
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	10, 79, 336
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	9 cut(s)	25, 86, 116, 176, 212, 218, 268, 289, 317
CviKI_1	RGCY	9 cut(s)	25, 86, 116, 176, 212, 218, 268, 289, 317
CviQI	GTAC	3 cut(s)	10, 79, 336
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	120, 240
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	45, 312
EcoT14I	CCWWGG	2 cut(s)	120, 240
ErhI	CCWWGG	2 cut(s)	120, 240
FaeI	CATG	1 cut(s)	244
FaiI	YATR	4 cut(s)	173, 242, 261, 326
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	87, 117
Fsp4HI	GCNGC	2 cut(s)	87, 117
GluI	GCNGC	2 cut(s)	87, 117
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	266
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	3 cut(s)	12, 109, 338
Hpy188I	TCNGA	2 cut(s)	104, 357
Hpy188III	TCNNGA	5 cut(s)	40, 67, 163, 272, 343
Hpy8I	GTNNAC	3 cut(s)	12, 109, 338
HpyAV	CCTTC	1 cut(s)	120
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	194, 250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 200, 209
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	8 cut(s)	32, 59, 162, 217, 271, 299, 326, 357
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	386
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	107
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	1 cut(s)	280
MseI	TTAA	1 cut(s)	368
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	47, 314
MvaI	CCWGG	2 cut(s)	47, 314
MwoI	GCNNNNNNNGC	3 cut(s)	83, 200, 209
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	305
NmeAIII	GCCGAG	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
Pfl23II	CGTACG	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	88, 118
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	45, 312
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	2 cut(s)	45, 312
PspLI	CGTACG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	3 cut(s)	11, 80, 337
RsaNI	GTAC	3 cut(s)	10, 79, 336
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	2 cut(s)	87, 117
Sau3AI	GATC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	47, 314
SfaNI	GCATC	1 cut(s)	386
SmlI	CTYRAG	3 cut(s)	20, 38, 213
SmoI	CTYRAG	3 cut(s)	20, 38, 213
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	2 cut(s)	57, 87
StyD4I	CCNGG	2 cut(s)	45, 312
StyI	CCWWGG	2 cut(s)	120, 240
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	27, 68
TasI	AATT	1 cut(s)	280
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	291, 340
TspGWI	ACGGA	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.