RchiOBHm_Chr6g0266811

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002209
Physical Location & Seq
Forward (+)
23274126 .. 23279117
4992 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23929

Sequence Viewer

Length: 1041 bp
ATGTGGAGATTCGGTGTTTTTGATTCCCAGGATGAAATGAGAGAACTAGATGTGCATAGTGGCAGTCAACCTTCATCTCGTACAAGTTTTGGCTCGAGTACTAGTGATAATGACGACCGCCTGTGTCAACGGGGTGAACAGCCTGCATACTCTTTTGTAGGAATGCATTGCATCTTTGATCAGTGCAGAGCCTCGGTTACTGTTTTGAAGTTTGGGCACATGAGCTCAGATCTGCTTGCGTATGGAGCATCAGATGGAACCTTGACAGTATGCACTGTCTCTGATCCTCCTCCAATTCTCAAGCATCTGAATGGTCACTCCAAAGATGTTACAGACTTTGATTTCTCGTCAAACAATCAGTACATTGCATCCTCATCGTTGGATAAAACTGTGAGAGTATGGGAGATTTCAAAAGGCCTATGCATAAGAGTAATATATGGAGTTTCTCCACAACTGTGTATTCGTTTTCACCCGGTTTTCAATTTCAGTACTGGGAGGACCATTCATGAAACATCATTTAACAGTCAAGTTACTGCTATGGACCATGCTCACACTGGACAGATCATTTTCTGTGGAGATGGGACGGAGTATTATCCCGTTCTCATCGGCATCGAAGTACGTAGCAGCAGGCAGAAATCTCCAGTCACAAATGTGGAGTACCGAAGTTTTTTTCTGTTGGCTCGGGCCGTGTTGCTGACATGTACTCAGGATGGAAGTTTGTCTTTCTTCCGTGTTGCACCGGAAATACAAGGTTATTTGACTCTTCGTTGCTCACTCAAATTAACTCCACGAATATACAATATCCGGGCTTCCTTTTGTCCTATGCTTTCCCTTGAAAAAGGAGAATATATAGTTGCCGGAAGTGAAGATTCAACTGTAAACTTCTACGACTTAACTCGGCCAAAGCATACATGTGTAAACAAGCTACAGGGTCATCGATTTCCTGTTATTGGGGTTGCTTGGAACCATGGAGAGAATTTATTAGCATCATCTGATTTCTATGGTACGGTTATTGTATGGAAGAGATCAAAGGCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

346

Amino Acids

38.64

Weight (kDa)

7.16

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 56 - 147 1.5e-13 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 60 - 192 7.9e-09 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 61 - 146 1.4e-11 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 62 - 161 5.3e-14 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 64 - 162 2.8e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 65 - 148 2.5e-10 THOC3 beta-propeller domain
WD40_Prp19 PF24814 65 - 158 1.2e-09 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 67 - 138 3.8e-07 CDC20/Fizzy WD40 domain
WDR55 PF24796 73 - 137 4.2e-06 WDR55
WD40 PF00400 100 - 134 3e-10 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 100 - 144 2e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 159 - 341 4e-09 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 279 - 343 3.6e-08 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 280 - 342 3.3e-09 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 280 - 344 6.8e-09 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1025
AciI CCGC 1 cut(s) 118
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 899
AcsI RAATTY 1 cut(s) 976
AfaI GTAC 8 cut(s) 82, 100, 362, 490, 618, 659, 703, 1006
AfiI CCNNNNNNNGG 1 cut(s) 950
AflIII ACRYGT 2 cut(s) 698, 911
AgsI TTSAA 5 cut(s) 208, 411, 481, 836, 873
AhlI ACTAGT 1 cut(s) 101
AjnI CCWGG 1 cut(s) 27
AleI CACNNNNGTG 2 cut(s) 454, 650
AluBI AGCT 2 cut(s) 225, 925
AluI AGCT 2 cut(s) 225, 925
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 278
Ama87I CYCGRG 2 cut(s) 94, 681
AoxI GGCC 3 cut(s) 415, 684, 899
ApeKI GCWGC 1 cut(s) 624
ApoI RAATTY 1 cut(s) 976
AspS9I GGNCC 3 cut(s) 498, 541, 684
AsuC2I CCSGG 2 cut(s) 473, 806
AsuHPI GGTGA 2 cut(s) 146, 461
AvaI CYCGRG 2 cut(s) 94, 681
AvaII GGWCC 2 cut(s) 498, 541
BaeGI GKGCMC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 636
BccI CCATC 3 cut(s) 248, 572, 704
BceAI ACGGC 1 cut(s) 671
BcgI CGANNNNNNTGC 2 cut(s) 357, 391
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 2 cut(s) 473, 806
BcoDI GTCTC 1 cut(s) 283
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 2 cut(s) 47, 102
BfmI CTRYAG 1 cut(s) 926
BfuAI ACCTGC 1 cut(s) 1025
BglII AGATCT 1 cut(s) 229
BisI GCNGC 1 cut(s) 625
BlsI GCNGC 1 cut(s) 626
BmcAI AGTACT 2 cut(s) 100, 490
Bme1390I CCNGG 3 cut(s) 29, 473, 806
Bme18I GGWCC 2 cut(s) 498, 541
BmeT110I CYCGRG 2 cut(s) 94, 681
BmgT120I GGNCC 3 cut(s) 498, 541, 684
BmiI GGNNCC 2 cut(s) 259, 965
BmrFI CCNGG 3 cut(s) 29, 473, 806
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 6 cut(s) 180, 257, 313, 377, 618, 995
BmuI ACTGGG 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 473, 806
Bsa29I ATCGAT 1 cut(s) 937
BsaAI YACGTR 1 cut(s) 620
BsaJI CCNNGG 3 cut(s) 27, 192, 967
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 950
Bse1I ACTGG 3 cut(s) 496, 559, 641
Bse3DI GCAATG 2 cut(s) 166, 363
BseBI CCWGG 1 cut(s) 29
BseCI ATCGAT 1 cut(s) 937
BseDI CCNNGG 3 cut(s) 27, 192, 967
BseGI GGATG 3 cut(s) 37, 368, 715
BseLI CCNNNNNNNGG 1 cut(s) 950
BseMI GCAATG 2 cut(s) 166, 363
BseMII CTCAG 2 cut(s) 240, 719
BseNI ACTGG 3 cut(s) 496, 559, 641
BseRI GAGGAG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 1 cut(s) 636
BsgI GTGCAG 1 cut(s) 205
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 3 cut(s) 417, 686, 901
BshVI ATCGAT 1 cut(s) 937
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 2 cut(s) 94, 681
BsiSI CCGG 4 cut(s) 473, 740, 805, 858
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 1 cut(s) 950
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 595
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 3 cut(s) 417, 686, 901
BsoBI CYCGRG 2 cut(s) 94, 681
Bsp1286I GDGCHC 2 cut(s) 219, 227
Bsp143I GATC 5 cut(s) 178, 229, 283, 561, 1025
Bsp19I CCATGG 1 cut(s) 967
BspACI CCGC 1 cut(s) 118
BspANI GGCC 3 cut(s) 417, 686, 901
BspCNI CTCAG 2 cut(s) 239, 718
BspDI ATCGAT 1 cut(s) 937
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 2 cut(s) 259, 965
BspMI ACCTGC 1 cut(s) 1025
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 2 cut(s) 166, 363
BsrI ACTGG 3 cut(s) 496, 559, 641
BssECI CCNNGG 3 cut(s) 27, 192, 967
BssMI GATC 5 cut(s) 178, 229, 283, 561, 1025
BssT1I CCWWGG 1 cut(s) 967
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 8 cut(s) 202, 268, 277, 391, 456, 524, 877, 1009
Bst6I CTCTTC 2 cut(s) 768, 1016
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 3 cut(s) 144, 237, 629
BstDEI CTNAG 2 cut(s) 226, 705
BstDSI CCRYGG 1 cut(s) 967
BstF5I GGATG 3 cut(s) 37, 368, 715
BstKTI GATC 5 cut(s) 181, 232, 286, 564, 1028
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 5 cut(s) 178, 229, 283, 561, 1025
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 2 cut(s) 702, 915
BstSCI CCNGG 3 cut(s) 27, 471, 804
BstSFI CTRYAG 1 cut(s) 926
BstSLI GKGCMC 1 cut(s) 219
BstSNI TACGTA 1 cut(s) 620
BstV1I GCAGC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
Bsu15I ATCGAT 1 cut(s) 937
BsuRI GGCC 3 cut(s) 417, 686, 901
BsuTUI ATCGAT 1 cut(s) 937
BtgI CCRYGG 1 cut(s) 967
BtsCI GGATG 3 cut(s) 37, 368, 715
BtsIMutI CAGTG 3 cut(s) 188, 273, 552
BveI ACCTGC 1 cut(s) 1025
Cac8I GCNNGC 3 cut(s) 144, 237, 629
CciI TCATGA 1 cut(s) 505
Cfr13I GGNCC 3 cut(s) 498, 541, 684
ClaI ATCGAT 1 cut(s) 937
Csp6I GTAC 8 cut(s) 81, 99, 361, 489, 617, 658, 702, 1005
CviAII CATG 6 cut(s) 220, 506, 545, 699, 912, 968
CviQI GTAC 8 cut(s) 81, 99, 361, 489, 617, 658, 702, 1005
DdeI CTNAG 2 cut(s) 226, 705
DpnI GATC 5 cut(s) 180, 231, 285, 563, 1027
DpnII GATC 5 cut(s) 178, 229, 283, 561, 1025
EaeI YGGCCR 1 cut(s) 899
Eam1104I CTCTTC 2 cut(s) 768, 1016
EarI CTCTTC 2 cut(s) 768, 1016
Ecl136II GAGCTC 1 cut(s) 225
Eco105I TACGTA 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 967
Eco147I AGGCCT 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 227
Eco47I GGWCC 2 cut(s) 498, 541
Eco53kI GAGCTC 1 cut(s) 225
Eco88I CYCGRG 2 cut(s) 94, 681
EcoICRI GAGCTC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 967
EcoT22I ATGCAT 2 cut(s) 168, 425
EcoT38I GRGCYC 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 967
FaeI CATG 6 cut(s) 223, 509, 548, 702, 915, 971
FalI AAGNNNNNCTT 2 cut(s) 706, 738
FaqI GGGAC 1 cut(s) 595
FatI CATG 6 cut(s) 219, 505, 544, 698, 911, 967
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 625
FokI GGATG 3 cut(s) 44, 355, 722
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 625
FspBI CTAG 2 cut(s) 47, 102
GluI GCNGC 1 cut(s) 625
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 3 cut(s) 417, 686, 901
HapII CCGG 4 cut(s) 473, 740, 805, 858
Hin1II CATG 6 cut(s) 223, 509, 548, 702, 915, 971
HincII GTYRAC 2 cut(s) 68, 128
HindII GTYRAC 2 cut(s) 68, 128
HinfI GANTC 4 cut(s) 9, 23, 760, 869
HpaII CCGG 4 cut(s) 473, 740, 805, 858
HphI GGTGA 2 cut(s) 146, 461
Hpy166II GTNNAC 5 cut(s) 68, 128, 137, 880, 919
Hpy188I TCNGA 5 cut(s) 229, 253, 283, 309, 994
Hpy188III TCNNGA 2 cut(s) 506, 707
Hpy8I GTNNAC 5 cut(s) 68, 128, 137, 880, 919
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 8 cut(s) 202, 268, 277, 391, 456, 524, 877, 1009
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 9 cut(s) 55, 146, 166, 171, 186, 273, 368, 423, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 226, 705
HpySE526I ACGT 1 cut(s) 619
Hsp92II CATG 6 cut(s) 223, 509, 548, 702, 915, 971
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 5 cut(s) 178, 229, 283, 561, 1025
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 1 cut(s) 636
LweI GCATC 6 cut(s) 180, 257, 313, 377, 618, 995
MaeI CTAG 2 cut(s) 47, 102
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 5 cut(s) 196, 314, 328, 529, 643
MalI GATC 5 cut(s) 180, 231, 285, 563, 1027
MboI GATC 5 cut(s) 178, 229, 283, 561, 1025
MboII GAAGA 4 cut(s) 718, 755, 878, 1033
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 219, 227
MluCI AATT 4 cut(s) 294, 481, 779, 976
MlyI GAGTC 1 cut(s) 754
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 5 cut(s) 202, 297, 300, 382, 489
Mph1103I ATGCAT 2 cut(s) 168, 425
MseI TTAA 4 cut(s) 519, 782, 893, 1039
MslI CAYNNNNRTG 4 cut(s) 309, 454, 650, 912
MspI CCGG 4 cut(s) 473, 740, 805, 858
MspR9I CCNGG 3 cut(s) 29, 473, 806
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 2 cut(s) 473, 806
NcoI CCATGG 1 cut(s) 967
NdeII GATC 5 cut(s) 178, 229, 283, 561, 1025
NlaIII CATG 6 cut(s) 223, 509, 548, 702, 915, 971
NlaIV GGNNCC 2 cut(s) 259, 965
NmeAIII GCCGAG 1 cut(s) 877
NmuCI GTSAC 2 cut(s) 314, 643
NsiI ATGCAT 2 cut(s) 168, 425
NspI RCATGY 2 cut(s) 702, 915
OliI CACNNNNGTG 2 cut(s) 454, 650
PaeR7I CTCGAG 1 cut(s) 94
PagI TCATGA 1 cut(s) 505
PceI AGGCCT 1 cut(s) 417
PciI ACATGT 2 cut(s) 698, 911
PctI GAATGC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 9, 23, 869
PkrI GCNGC 1 cut(s) 626
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
Ppu21I YACGTR 1 cut(s) 620
PscI ACATGT 2 cut(s) 698, 911
Psp124BI GAGCTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 259, 965
PspPI GGNCC 3 cut(s) 498, 541, 684
PspXI VCTCGAGB 1 cut(s) 94
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 8 cut(s) 82, 100, 362, 490, 618, 659, 703, 1006
RsaNI GTAC 8 cut(s) 81, 99, 361, 489, 617, 658, 702, 1005
RseI CAYNNNNRTG 4 cut(s) 309, 454, 650, 912
SacI GAGCTC 1 cut(s) 227
SaqAI TTAA 4 cut(s) 519, 782, 893, 1039
SatI GCNGC 1 cut(s) 625
Sau3AI GATC 5 cut(s) 178, 229, 283, 561, 1025
Sau96I GGNCC 3 cut(s) 498, 541, 684
ScaI AGTACT 2 cut(s) 100, 490
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 3 cut(s) 29, 473, 806
SduI GDGCHC 2 cut(s) 219, 227
SetI ASST 7 cut(s) 73, 227, 263, 622, 754, 927, 1039
SfaNI GCATC 6 cut(s) 180, 257, 313, 377, 618, 995
SfcI CTRYAG 1 cut(s) 926
Sfr274I CTCGAG 1 cut(s) 94
SinI GGWCC 2 cut(s) 498, 541
SlaI CTCGAG 1 cut(s) 94
SmiMI CAYNNNNRTG 4 cut(s) 309, 454, 650, 912
SmlI CTYRAG 2 cut(s) 94, 299
SmoI CTYRAG 2 cut(s) 94, 299
SnaBI TACGTA 1 cut(s) 620
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 4 cut(s) 294, 481, 779, 976
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 1 cut(s) 118
SspMI CTAG 2 cut(s) 47, 102
SstI GAGCTC 1 cut(s) 227
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 27, 471, 804
StyI CCWWGG 1 cut(s) 967
TaaI ACNGT 8 cut(s) 202, 268, 277, 391, 456, 524, 877, 1009
TaiI ACGT 1 cut(s) 622
TaqI TCGA 3 cut(s) 95, 612, 937
TasI AATT 4 cut(s) 294, 481, 779, 976
TatI WGTACW 4 cut(s) 98, 360, 488, 701
TfiI GAWTC 3 cut(s) 9, 23, 869
Tru1I TTAA 4 cut(s) 519, 782, 893, 1039
Tru9I TTAA 4 cut(s) 519, 782, 893, 1039
TscAI CASTG 3 cut(s) 188, 280, 559
TseFI GTSAC 2 cut(s) 314, 643
TseI GCWGC 1 cut(s) 624
Tsp45I GTSAC 2 cut(s) 314, 643
TspDTI ATGAA 4 cut(s) 48, 63, 494, 522
TspGWI ACGGA 2 cut(s) 599, 719
TspRI CASTG 3 cut(s) 188, 280, 559
VpaK11BI GGWCC 2 cut(s) 498, 541
XapI RAATTY 1 cut(s) 976
XceI RCATGY 2 cut(s) 702, 915
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XhoI CTCGAG 1 cut(s) 94
XspI CTAG 2 cut(s) 47, 102
ZrmI AGTACT 2 cut(s) 100, 490
Zsp2I ATGCAT 2 cut(s) 168, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.