Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002209

Physical Location & Seq

Genomic Coordinates Reverse (-)

2415569 .. 2416749

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0034600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTAATTCACTTGATCAGACCTGTGGCAATGTTGAGTTCACAAAAGAGCTAGCCGAGGCATTGCTTTATGAGAAGTTTGATGATGATAAGAGGAACGGCAAAGAATTAGCTGAATATGTTAAGGACCTTAAGGATTGCACAATGAAATGGCACGAGAAGAAGAAATCCTATCTTCTTGAGGAAGACAGGCTTCGGATTTTACTTGATTTGGCTGAAAAAAAGTGTATTCATGCTGATGCGGAGAGGAAAAAAAAGGTAGCTGAGCTCAATGCCATGCTTTCCAACTTGAGACAAAGTATAGCTGCTTTAGAAGAGGAAATTGCAAAGGAAGAATCAGAGAAGACGGATGCAATTATTAGTCTTGGAAGAGAAAGGGAAGCAAGGGAGGCTGCTGAGACGTTGCAAACTTCTTTCCTACGGATGCTTCAACAACTGGAGGAAGAGAAATTAGTTGCTGAGCAGAGGGTTTCAGAACTGGAGGATGAATTTAATCGTAAGTTGGAGTACAGCAGGAGTCTACAAGAGTACAATGCCAAACTTGAAATTGATATTAGTACAATGAATGAGGCTCGCAAACGAGCGGATATGGAGAGATTGAGTAGCCAAATTCAAGGGAAACTGAATATCGTTCAGAAACTGATGAAATTAATTAAAGGGGACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

222

Amino Acids

25.82

Weight (kDa)

5.18

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16405
fragaria_vesca	FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910
malus_domestica	MD05G1059400.v1.1 MD10G1067500.v1.1
prunus_persica	Prupe.8G089300_v2.0.a1
pyrus_communis	pycom05g05080 pycom10g05340
rosa_chinensis	RchiOBHm_Chr6g0266641 RchiOBHm_Chr6g0266811
rosa_laevigata	RLG00000013952 RLG00000013956 RLG00000013961 RLG00000014043 RLG00000014087 RLG00000014092
rosa_multiflora	Rmu_sc0006413.1_g000019
rosa_roxburghii	Rroxscaffold_7G00195140 Rroxscaffold_7G00201600
rosa_rugosa	Rorug05G0034500 Rorug05G0034600 Rorug05G0232800 Rorug06G0026800 Rorug07G0138600
rosa_samantha	Rh5CG368800 Rh6AG147200 Rh6AG147900 Rh6AG148100 Rh6BG147400 Rh6BG148600 Rh6BG149000 Rh6CG143000 Rh6DG132000 Rh6DG132800
rosa_wichuraiana	Rw6G012620 Rw6G012770 Rw6G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	520
AciI	CCGC	2 cut(s)	242, 584
AcsI	RAATTY	2 cut(s)	488, 609
AfaI	GTAC	3 cut(s)	509, 530, 559
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	431, 545, 614
AluBI	AGCT	5 cut(s)	52, 113, 263, 268, 305
AluI	AGCT	5 cut(s)	52, 113, 263, 268, 305
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	286, 392
AlwNI	CAGNNNCTG	1 cut(s)	640
ApeKI	GCWGC	2 cut(s)	305, 392
ApoI	RAATTY	2 cut(s)	488, 609
AseI	ATTAAT	1 cut(s)	650
AspS9I	GGNCC	1 cut(s)	127
AsuNHI	GCTAGC	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	2 cut(s)	192, 350
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	292, 379
BceAI	ACGGC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	286, 392
BfaI	CTAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	2 cut(s)	306, 393
BlpI	GCTNAGC	2 cut(s)	264, 459
BlsI	GCNGC	2 cut(s)	307, 394
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmsI	GCATC	3 cut(s)	229, 340, 414
BmtI	GCTAGC	1 cut(s)	56
BpiI	GAAGAC	2 cut(s)	192, 350
BpmI	CTGGAG	2 cut(s)	458, 500
Bpu1102I	GCTNAGC	2 cut(s)	264, 459
BpuEI	CTTGAG	2 cut(s)	200, 310
BsaJI	CCNNGG	1 cut(s)	57
Bse1I	ACTGG	2 cut(s)	441, 483
Bse3DI	GCAATG	2 cut(s)	37, 62
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	355, 429, 490
BseMI	GCAATG	2 cut(s)	37, 62
BseMII	CTCAG	3 cut(s)	255, 387, 450
BseNI	ACTGG	2 cut(s)	441, 483
BseXI	GCAGC	2 cut(s)	292, 379
BsiHKAI	GWGCWC	1 cut(s)	270
BsmAI	GTCTC	2 cut(s)	286, 392
BsmBI	CGTCTC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	16
Bsp1720I	GCTNAGC	2 cut(s)	264, 459
BspACI	CCGC	2 cut(s)	242, 584
BspCNI	CTCAG	3 cut(s)	256, 388, 451
BspOI	GCTAGC	1 cut(s)	56
BspTI	CTTAAG	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	584
BsrDI	GCAATG	2 cut(s)	37, 62
BsrI	ACTGG	2 cut(s)	441, 483
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	16
BssSI	CACGAG	1 cut(s)	155
Bst2BI	CACGAG	1 cut(s)	155
Bst6I	CTCTTC	3 cut(s)	309, 364, 438
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	54, 574
BstDEI	CTNAG	3 cut(s)	264, 396, 459
BstF5I	GGATG	3 cut(s)	355, 429, 490
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	286, 392
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstV1I	GCAGC	2 cut(s)	292, 379
BstV2I	GAAGAC	2 cut(s)	192, 350
BtsCI	GGATG	3 cut(s)	355, 429, 490
Cac8I	GCNNGC	2 cut(s)	54, 574
CaiI	CAGNNNCTG	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	508, 529, 558
CviAII	CATG	2 cut(s)	233, 277
CviQI	GTAC	3 cut(s)	508, 529, 558
DdeI	CTNAG	3 cut(s)	264, 396, 459
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	3 cut(s)	309, 364, 438
EarI	CTCTTC	3 cut(s)	309, 364, 438
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	2 cut(s)	236, 280
FaiI	YATR	6 cut(s)	72, 120, 234, 278, 302, 590
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	2 cut(s)	232, 276
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	306, 393
FokI	GGATG	3 cut(s)	362, 436, 497
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	306, 393
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	2 cut(s)	306, 393
GsuI	CTGGAG	2 cut(s)	458, 500
Hin1II	CATG	2 cut(s)	236, 280
HinfI	GANTC	2 cut(s)	335, 517
Hpy166II	GTNNAC	2 cut(s)	42, 521
Hpy188I	TCNGA	5 cut(s)	21, 198, 340, 475, 636
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	42, 521
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	4 cut(s)	141, 326, 353, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	3 cut(s)	264, 396, 459
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	2 cut(s)	236, 280
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	5 cut(s)	37, 175, 422, 464, 499
Lsp1109I	GCAGC	2 cut(s)	292, 379
LweI	GCATC	3 cut(s)	229, 340, 414
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	401
MalI	GATC	1 cut(s)	18
MbiI	CCGCTC	1 cut(s)	584
MboI	GATC	1 cut(s)	16
MboII	GAAGA	9 cut(s)	167, 172, 175, 197, 326, 344, 355, 381, 455
MhlI	GDGCHC	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	2 cut(s)	309, 483
MseI	TTAA	5 cut(s)	123, 132, 492, 650, 654
MslI	CAYNNNNRTG	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	1 cut(s)	16
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	236, 280
NmeAIII	GCCGAG	1 cut(s)	82
PacI	TTAATTAA	1 cut(s)	654
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	307, 394
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PpuMI	RGGWCCY	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	127
PspPPI	RGGWCCY	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	640
RsaI	GTAC	3 cut(s)	509, 530, 559
RsaNI	GTAC	3 cut(s)	508, 529, 558
RseI	CAYNNNNRTG	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	5 cut(s)	123, 132, 492, 650, 654
SatI	GCNGC	2 cut(s)	306, 393
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	9 cut(s)	26, 54, 115, 132, 261, 265, 270, 307, 404
SfaNI	GCATC	3 cut(s)	229, 340, 414
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	3 cut(s)	131, 179, 289
SmoI	CTYRAG	3 cut(s)	131, 179, 289
SsiI	CCGC	2 cut(s)	242, 584
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	270
TaiI	ACGT	1 cut(s)	404
TatI	WGTACW	3 cut(s)	507, 528, 557
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	5 cut(s)	123, 132, 492, 650, 654
Tru9I	TTAA	5 cut(s)	123, 132, 492, 650, 654
TseI	GCWGC	2 cut(s)	305, 392
TspDTI	ATGAA	5 cut(s)	161, 221, 501, 578, 659
TspGWI	ACGGA	2 cut(s)	362, 436
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	127
VspI	ATTAAT	1 cut(s)	650
XapI	RAATTY	2 cut(s)	488, 609
XmiI	GTMKAC	1 cut(s)	520
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.