Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002209

Physical Location & Seq

Genomic Coordinates Forward (+)

10930271 .. 10930853

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0138600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGGCCTCCTCTTCTGCTGGAGTGAATAGTGAGGCTCATGGGGTTCGGCGGGTGGTCTGGCGAGCGAGAGTCCCACCCAAGAAGAAGGTTTGTATTTTGGACACCAATTGTCTGTTCTGTGATAAATGTGTCGAAAGGGATGTGCATGTGTTTAAAGACTGTGAAGCACTTGATGTGTTTTGGCATGCTAGTGAGGTTGGTTTTATACCGAGGAAACAACCAGGAGACATGGTTCAATGGTGGATTAGGGATGTGGTGGTTTCGATTCCTAGGGCCCAGGTTGACAAGTTTATGGTGTGCATGTGGGTAATTTGGAGTGAACGTAATAGAATTGCATGGAAAGGAGGTGTTTATAATCCTTTGTGCATGGCTAAGTGGGCTACTCATTATTTAGAAGAATTCCACAAACTGCACCCAGTAGCATCTAAGACCAGGAACCGCCCTCTGTCAAGATGGGTTTGCCCACCTAGTGGAAGGCAGAGGATAAATGTGGACGGTGCTTTTAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

171

Amino Acids

19.81

Weight (kDa)

9.55

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16405
fragaria_vesca	FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910
malus_domestica	MD05G1059400.v1.1 MD10G1067500.v1.1
prunus_persica	Prupe.8G089300_v2.0.a1
pyrus_communis	pycom05g05080 pycom10g05340
rosa_chinensis	RchiOBHm_Chr6g0266641 RchiOBHm_Chr6g0266811
rosa_laevigata	RLG00000013952 RLG00000013956 RLG00000013961 RLG00000014043 RLG00000014087 RLG00000014092
rosa_multiflora	Rmu_sc0006413.1_g000019
rosa_roxburghii	Rroxscaffold_7G00195140 Rroxscaffold_7G00201600
rosa_rugosa	Rorug05G0034500 Rorug05G0034600 Rorug05G0232800 Rorug06G0026800 Rorug07G0138600
rosa_samantha	Rh5CG368800 Rh6AG147200 Rh6AG147900 Rh6AG148100 Rh6BG147400 Rh6BG148600 Rh6BG149000 Rh6CG143000 Rh6DG132000 Rh6DG132800
rosa_wichuraiana	Rw6G012620 Rw6G012770 Rw6G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AccB7I	CCANNNNNTGG	1 cut(s)	473
AciI	CCGC	3 cut(s)	5, 52, 442
AcsI	RAATTY	1 cut(s)	401
AdeI	CACNNNGTG	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	3 cut(s)	223, 279, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
Alw26I	GTCTC	1 cut(s)	222
AoxI	GGCC	2 cut(s)	6, 276
ApaI	GGGCCC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	401
AspA2I	CCTAGG	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	276, 277
AvrII	CCTAGG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	280
BccI	CCATC	1 cut(s)	450
BciT130I	CCWGG	3 cut(s)	225, 281, 436
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	3 cut(s)	192, 273, 471
BisI	GCNGC	1 cut(s)	6
BlnI	CCTAGG	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	3 cut(s)	225, 281, 436
BmgT120I	GGNCC	2 cut(s)	276, 277
BmiI	GGNNCC	2 cut(s)	278, 440
BmrFI	CCNGG	3 cut(s)	225, 281, 436
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	212, 272, 279
BsaXI	ACNNNNNCTCC	4 cut(s)	219, 249, 310, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse1I	ACTGG	1 cut(s)	419
BseBI	CCWGG	3 cut(s)	225, 281, 436
BseDI	CCNNGG	3 cut(s)	212, 272, 279
BseGI	GGATG	2 cut(s)	148, 259
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseNI	ACTGG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	8, 278
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	8, 278
Bsp120I	GGGCCC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	280
BspACI	CCGC	3 cut(s)	5, 52, 442
BspANI	GGCC	2 cut(s)	8, 278
BspLI	GGNNCC	2 cut(s)	278, 440
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	212, 272, 279
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	3 cut(s)	225, 281, 436
Bst4CI	ACNGT	2 cut(s)	164, 500
Bst6I	CTCTTC	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	66, 189
BstDEI	CTNAG	2 cut(s)	375, 429
BstF5I	GGATG	2 cut(s)	148, 259
BstMAI	GTCTC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	3 cut(s)	225, 281, 436
BstNSI	RCATGY	3 cut(s)	152, 191, 307
BstSCI	CCNGG	3 cut(s)	223, 279, 434
BstSLI	GKGCMC	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	8, 278
BtsCI	GGATG	2 cut(s)	148, 259
Cac8I	GCNNGC	2 cut(s)	66, 189
Cfr13I	GGNCC	2 cut(s)	276, 277
CviAII	CATG	7 cut(s)	41, 149, 188, 232, 304, 339, 370
CviJI	RGCY	5 cut(s)	8, 38, 278, 374, 383
CviKI_1	RGCY	5 cut(s)	8, 38, 278, 374, 383
DdeI	CTNAG	2 cut(s)	375, 429
DraI	TTTAAA	1 cut(s)	157
DraIII	CACNNNGTG	1 cut(s)	473
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	3 cut(s)	223, 279, 434
EcoT14I	CCWWGG	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	7 cut(s)	44, 152, 191, 235, 307, 342, 373
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	7 cut(s)	40, 148, 187, 231, 303, 338, 369
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	155, 266
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	192, 273, 471
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	8, 278
Hin1II	CATG	7 cut(s)	44, 152, 191, 235, 307, 342, 373
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	72, 268
Hpy166II	GTNNAC	3 cut(s)	286, 323, 496
Hpy188III	TCNNGA	1 cut(s)	453
Hpy8I	GTNNAC	3 cut(s)	286, 323, 496
HpyAV	CCTTC	2 cut(s)	82, 471
HpyCH4III	ACNGT	2 cut(s)	164, 500
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	5 cut(s)	148, 303, 338, 369, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	375, 429
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	7 cut(s)	44, 152, 191, 235, 307, 342, 373
LpnPI	CCDG	9 cut(s)	6, 46, 210, 237, 266, 293, 421, 432, 448
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	3 cut(s)	192, 273, 471
MaeII	ACGT	1 cut(s)	325
MboII	GAAGA	3 cut(s)	6, 97, 410
MfeI	CAATTG	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	4 cut(s)	109, 312, 333, 401
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	8 cut(s)	19, 22, 28, 190, 207, 341, 456, 477
MseI	TTAA	3 cut(s)	156, 507, 514
MslI	CAYNNNNRTG	1 cut(s)	192
MspR9I	CCNGG	3 cut(s)	225, 281, 436
MunI	CAATTG	1 cut(s)	109
MvaI	CCWGG	3 cut(s)	225, 281, 436
MwoI	GCNNNNNNNGC	1 cut(s)	380
NlaIII	CATG	7 cut(s)	44, 152, 191, 235, 307, 342, 373
NlaIV	GGNNCC	2 cut(s)	278, 440
NspI	RCATGY	3 cut(s)	152, 191, 307
PaeI	GCATGC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	268
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PsiI	TTATAA	1 cut(s)	357
Psp6I	CCWGG	3 cut(s)	223, 279, 434
PspGI	CCWGG	3 cut(s)	223, 279, 434
PspN4I	GGNNCC	2 cut(s)	278, 440
PspOMI	GGGCCC	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	276, 277
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	156, 507, 514
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	2 cut(s)	276, 277
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	3 cut(s)	225, 281, 436
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	6 cut(s)	93, 201, 285, 328, 352, 472
SfaNI	GCATC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	192
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	4 cut(s)	109, 312, 333, 401
SsiI	CCGC	3 cut(s)	5, 52, 442
SspMI	CTAG	3 cut(s)	192, 273, 471
StyD4I	CCNGG	3 cut(s)	223, 279, 434
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	2 cut(s)	164, 500
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	135, 266
TasI	AATT	4 cut(s)	109, 312, 333, 401
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	3 cut(s)	156, 507, 514
Tru9I	TTAA	3 cut(s)	156, 507, 514
Van91I	CCANNNNNTGG	1 cut(s)	473
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	3 cut(s)	152, 191, 307
XmaJI	CCTAGG	1 cut(s)	272
XspI	CTAG	3 cut(s)	192, 273, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.