Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002209

Physical Location & Seq

Genomic Coordinates Reverse (-)

3247115 .. 3247686

Gene Structure 572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0026800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGTGGCATCACTTTGACATTGAAAGTGGCTGTGGCAGCAGTTCACAGAGATGAGGAAGATCTTTCTTTGCTTCGTTGTATCATCGATGATATTAAGACTCTTGTGAGAAATATTGAGGGAATCAATGTTCATCATGTGTTTCGTGAAGCAAACTATGTAGCACATCGATTAGATTCATTTTGTTACTGCATGTTAAACAGCAAGAAGCGTGAGTTTAGGCTTGATGTCTCCGGCAATGTCAATAACATGAATAAGGAGAGAAACTTGACTGGGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

93

Amino Acids

10.63

Weight (kDa)

7.78

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16405
fragaria_vesca	FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910 FvH4_2g09910
malus_domestica	MD05G1059400.v1.1 MD10G1067500.v1.1
prunus_persica	Prupe.8G089300_v2.0.a1
pyrus_communis	pycom05g05080 pycom10g05340
rosa_chinensis	RchiOBHm_Chr6g0266641 RchiOBHm_Chr6g0266811
rosa_laevigata	RLG00000013952 RLG00000013956 RLG00000013961 RLG00000014043 RLG00000014087 RLG00000014092
rosa_multiflora	Rmu_sc0006413.1_g000019
rosa_roxburghii	Rroxscaffold_7G00195140 Rroxscaffold_7G00201600
rosa_rugosa	Rorug05G0034500 Rorug05G0034600 Rorug05G0232800 Rorug06G0026800 Rorug07G0138600
rosa_samantha	Rh5CG368800 Rh6AG147200 Rh6AG147900 Rh6AG148100 Rh6BG147400 Rh6BG148600 Rh6BG149000 Rh6CG143000 Rh6DG132000 Rh6DG132800
rosa_wichuraiana	Rw6G012620 Rw6G012770 Rw6G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	25
AloI	GAACNNNNNNTCC	2 cut(s)	114, 146
Alw26I	GTCTC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	235
BfmI	CTRYAG	1 cut(s)	278
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	282
Bsa29I	ATCGAT	2 cut(s)	87, 169
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	244
BseCI	ATCGAT	2 cut(s)	87, 169
BseMI	GCAATG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	50
BshVI	ATCGAT	2 cut(s)	87, 169
BsiSI	CCGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	61
BspDI	ATCGAT	2 cut(s)	87, 169
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	2 cut(s)	87, 169
BsuTUI	ATCGAT	2 cut(s)	87, 169
ClaI	ATCGAT	2 cut(s)	87, 169
CviAII	CATG	3 cut(s)	137, 193, 250
CviJI	RGCY	3 cut(s)	32, 223, 277
CviKI_1	RGCY	3 cut(s)	32, 223, 277
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
FaeI	CATG	3 cut(s)	140, 196, 253
FaiI	YATR	4 cut(s)	138, 159, 194, 251
FatI	CATG	3 cut(s)	136, 192, 249
Fnu4HI	GCNGC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	39
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	3 cut(s)	140, 196, 253
HinfI	GANTC	3 cut(s)	100, 123, 176
HpaII	CCGG	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	140, 196, 253
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	2 cut(s)	247, 258
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	2 cut(s)	49, 112
MseI	TTAA	2 cut(s)	96, 197
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	3 cut(s)	140, 196, 253
NspI	RCATGY	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	123, 176
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	96, 197
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	94
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	278
SgeI	CNNG	9 cut(s)	116, 149, 158, 205, 217, 224, 236, 246, 262
SmiMI	CAYNNNNRTG	1 cut(s)	51
SspI	AATATT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	87, 169
TfiI	GAWTC	2 cut(s)	123, 176
Tru1I	TTAA	2 cut(s)	96, 197
Tru9I	TTAA	2 cut(s)	96, 197
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	122, 168, 266
XceI	RCATGY	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.