Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005521

Physical Location & Seq

Genomic Coordinates Reverse (-)

23245017 .. 23246561

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1146100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTATGGTTCAAGCTCAACTTCATCCAAGGATGACACTGTCATCTCAATCCCTAGCACCAAAAAAAGGCCTGCTGCAGTTCTTGAAGAAGTCGCTCAGCGCGATCCAAAGCTCGCGAAAAGGATTATGACTAACCGGAGGTCGGCTATGAGGGCAAAGGAGAGGAAGAAGATGTACATTCAGACGCTTGAATGCAACATACAAAGGTTGCAGTTTGAATTAGCTGCTCTGACTGCTCAGTTGGAACAATGGCAGGTAGACACCCTTTACATAACTGCAGAAAACAATAGATTGAAAGAATGTCTACACCATATTTTGGAAGACATTGAATTGCAAGACGCCTTGAATTATCATAGCAGAAATGAGATTGAACGTCTGAAAAGACTTGTTTTCTCAAACAATATCTCAAACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

139

Amino Acids

16.08

Weight (kDa)

8.93

Isoelectric Point (pI)

70.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	35 - 84	3e-06	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17290
malus_domestica	MD10G1146100.v1.1
prunus_persica	Prupe.8G184500_v2.0.a1
pyrus_communis	pycom05g14630
rosa_chinensis	RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011
rosa_laevigata	RLG00000012930 RLG00000022524
rosa_multiflora	Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790
rosa_rugosa	Rorug06G0143600
rosa_samantha	Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200
rosa_wichuraiana	Rw6G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccI	GTMKAC	2 cut(s)	258, 304
AccII	CGCG	2 cut(s)	102, 116
AclWI	GGATC	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	66, 142, 316
AgsI	TTSAA	8 cut(s)	12, 86, 191, 218, 295, 329, 346, 371
AluBI	AGCT	3 cut(s)	15, 112, 224
AluI	AGCT	3 cut(s)	15, 112, 224
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	74, 224
AspLEI	GCGC	1 cut(s)	102
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	61, 211
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	2 cut(s)	75, 276
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	2 cut(s)	75, 225
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	2 cut(s)	76, 226
BpiI	GAAGAC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 142, 316
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	23, 37
BseLI	CCNNNNNNNGG	3 cut(s)	66, 142, 316
BseMII	CTCAG	2 cut(s)	110, 251
BseXI	GCAGC	2 cut(s)	61, 211
Bsh1236I	CGCG	2 cut(s)	102, 116
BshFI	GGCC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	136
BslI	CCNNNNNNNGG	3 cut(s)	66, 142, 316
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	103
Bsp1720I	GCTNAGC	1 cut(s)	96
Bsp68I	TCGCGA	1 cut(s)	116
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	109, 250
BspFNI	CGCG	2 cut(s)	102, 116
BspMAI	CTGCAG	2 cut(s)	79, 280
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	339
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	72, 114
BstDEI	CTNAG	2 cut(s)	96, 237
BstF5I	GGATG	2 cut(s)	23, 37
BstFNI	CGCG	2 cut(s)	102, 116
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 233
BstSFI	CTRYAG	2 cut(s)	75, 276
BstUI	CGCG	2 cut(s)	102, 116
BstV1I	GCAGC	2 cut(s)	61, 211
BstV2I	GAAGAC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	23, 37
BtsIMutI	CAGTG	1 cut(s)	36
BtuMI	TCGCGA	1 cut(s)	116
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	72, 114
CfoI	GCGC	1 cut(s)	102
CseI	GACGC	2 cut(s)	193, 347
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	5 cut(s)	15, 70, 112, 146, 224
CviKI_1	RGCY	5 cut(s)	15, 70, 112, 146, 224
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	96, 237
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaiI	YATR	7 cut(s)	6, 128, 149, 200, 272, 312, 354
FalI	AAGNNNNNCTT	1 cut(s)	36
FblI	GTMKAC	2 cut(s)	258, 304
Fnu4HI	GCNGC	2 cut(s)	75, 225
FokI	GGATG	2 cut(s)	10, 44
Fsp4HI	GCNGC	2 cut(s)	75, 225
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	2 cut(s)	75, 225
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	2 cut(s)	193, 347
HhaI	GCGC	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	339
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	259, 305
Hpy188I	TCNGA	3 cut(s)	183, 231, 378
Hpy188III	TCNNGA	2 cut(s)	83, 115
Hpy8I	GTNNAC	2 cut(s)	259, 305
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	5 cut(s)	77, 195, 211, 278, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 233
HpyF3I	CTNAG	2 cut(s)	96, 237
HpySE526I	ACGT	1 cut(s)	373
Hsp92I	GRCGYC	1 cut(s)	339
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	3 cut(s)	84, 149, 239
Lsp1109I	GCAGC	2 cut(s)	61, 211
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	373
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	4 cut(s)	98, 178, 181, 332
MluCI	AATT	3 cut(s)	218, 329, 346
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	3 cut(s)	132, 144, 156
MspI	CCGG	1 cut(s)	136
Mva1269I	GAATGC	1 cut(s)	197
MvnI	CGCG	2 cut(s)	102, 116
MwoI	GCNNNNNNNGC	2 cut(s)	152, 233
NdeII	GATC	1 cut(s)	103
NruI	TCGCGA	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	2 cut(s)	76, 226
PstI	CTGCAG	2 cut(s)	79, 280
PsyI	GACNNNGTC	1 cut(s)	38
RruI	TCGCGA	1 cut(s)	116
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SatI	GCNGC	2 cut(s)	75, 225
Sau3AI	GATC	1 cut(s)	103
SetI	ASST	7 cut(s)	17, 114, 143, 209, 226, 258, 376
SfcI	CTRYAG	2 cut(s)	75, 276
Sse9I	AATT	3 cut(s)	218, 329, 346
SseBI	AGGCCT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	376
TasI	AATT	3 cut(s)	218, 329, 346
TatI	WGTACW	1 cut(s)	174
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	2 cut(s)	74, 224
TspDTI	ATGAA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	2 cut(s)	258, 304
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.