Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005521

Physical Location & Seq

Genomic Coordinates Reverse (-)

44684676 .. 44701522

Gene Structure 16847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG256600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTGCAGGAGGCTGGGAGGAAAGCTTTGAACCGGGCAGAGGGACTTTCGCTACTTCCGGTGGCCGGTTCGGTGGTTTTCAGGCCGGTTCTGGGGGTGGGGCAGCCGCGTGCACCATGGCTTCCAGGATTGAAGACATAAATGATCCAATGCAAGCGAAAAGAATCAGCAACCGCATGTCAAAGAAGAGGTCAAATATGAAGAAGAAGCTATATTTGAAGAGACTTGAAGAAAAGGTAGTGAATCTGACAACTCAAGCAGCTATTCTATCTGCTCAAGTGACTTTCCTGCAGACAAACAAAAATTTACTCCAGTTTGAGATTATGTGCCTGAAACTACGTGCATGCCTCGCTAAGAAAGAGAATGAAGTTCAAGATGCAGCAGATAGCAATATGGCTGGCCAAAATTCTTCAAGGAATGAACTGGCTATGGAACTTACCTGGCTTAGACAGAGGAAAGAACGATTGCAAGCTCAATATGCTGCTCAAATTTCTAAACTAGCTGCTCTCGAGAGAGAGGAATATATCCTCAAAGATTTAAACATCAAATTAAAAGAACACGAGAACGATTTGCAAGTACAGATCAAACTGGAAGATGCCTTGATTGAAGAAACCAAAAAGGAGCACAAGTTGTTGATGAATATATTGAGCGGGAAAGAGTTTGCACATGATACGACCAGTTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

229

Amino Acids

25.67

Weight (kDa)

9.03

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17290
malus_domestica	MD10G1146100.v1.1
prunus_persica	Prupe.8G184500_v2.0.a1
pyrus_communis	pycom05g14630
rosa_chinensis	RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011
rosa_laevigata	RLG00000012930 RLG00000022524
rosa_multiflora	Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790
rosa_rugosa	Rorug06G0143600
rosa_samantha	Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200
rosa_wichuraiana	Rw6G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	651
AccII	CGCG	1 cut(s)	110
AciI	CCGC	3 cut(s)	108, 175, 651
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	2 cut(s)	64, 400
AcsI	RAATTY	3 cut(s)	304, 406, 489
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	3 cut(s)	41, 66, 93
AgsI	TTSAA	8 cut(s)	32, 134, 220, 230, 374, 414, 608, 684
AjnI	CCWGG	2 cut(s)	125, 440
AluBI	AGCT	5 cut(s)	27, 211, 263, 473, 503
AluI	AGCT	5 cut(s)	27, 211, 263, 473, 503
Alw21I	GWGCWC	2 cut(s)	116, 627
Alw26I	GTCTC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	3 cut(s)	64, 84, 400
ApaLI	GTGCAC	1 cut(s)	112
ApeKI	GCWGC	6 cut(s)	5, 104, 260, 380, 482, 503
ApoI	RAATTY	3 cut(s)	304, 406, 489
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AsuC2I	CCSGG	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	509
BaeGI	GKGCMC	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	402
BauI	CACGAG	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	2 cut(s)	116, 627
BbvI	GCAGC	5 cut(s)	116, 272, 392, 469, 490
BciT130I	CCWGG	2 cut(s)	127, 442
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	6, 290
BisI	GCNGC	7 cut(s)	6, 105, 108, 261, 381, 483, 504
BlsI	GCNGC	7 cut(s)	7, 106, 109, 262, 382, 484, 505
Bme1390I	CCNGG	3 cut(s)	36, 127, 442
BmeT110I	CYCGRG	1 cut(s)	509
BmrFI	CCNGG	3 cut(s)	36, 127, 442
BmsI	GCATC	2 cut(s)	367, 586
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	296
BpuEI	CTTGAG	2 cut(s)	240, 261
BpuMI	CCSGG	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 66, 93
Bse118I	RCCGGY	2 cut(s)	66, 86
Bse1I	ACTGG	4 cut(s)	313, 429, 594, 678
BseBI	CCWGG	2 cut(s)	127, 442
BseDI	CCNNGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	41, 66, 93
BseNI	ACTGG	4 cut(s)	313, 429, 594, 678
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	5 cut(s)	116, 272, 392, 469, 490
BseYI	CCCAGC	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	3 cut(s)	66, 86, 402
BsiHKAI	GWGCWC	2 cut(s)	116, 627
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	4 cut(s)	35, 60, 67, 87
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	3 cut(s)	41, 66, 93
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	3 cut(s)	66, 86, 402
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	2 cut(s)	116, 627
Bsp143I	GATC	2 cut(s)	145, 582
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	3 cut(s)	108, 175, 651
BspANI	GGCC	3 cut(s)	66, 86, 402
BspFNI	CGCG	1 cut(s)	110
BspMAI	CTGCAG	2 cut(s)	10, 294
BspPI	GGATC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	651
BsrFI	RCCGGY	2 cut(s)	66, 86
BsrI	ACTGG	4 cut(s)	313, 429, 594, 678
BssAI	RCCGGY	2 cut(s)	66, 86
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	145, 582
BssSI	CACGAG	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	560
Bst2UI	CCWGG	2 cut(s)	127, 442
Bst6I	CTCTTC	2 cut(s)	182, 215
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	5 cut(s)	112, 156, 346, 400, 471
BstDEI	CTNAG	2 cut(s)	354, 446
BstDSI	CCRYGG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	110
BstKTI	GATC	2 cut(s)	148, 585
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	2 cut(s)	145, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 479
BstNI	CCWGG	2 cut(s)	127, 442
BstNSI	RCATGY	2 cut(s)	181, 348
BstSCI	CCNGG	3 cut(s)	34, 125, 440
BstSFI	CTRYAG	2 cut(s)	6, 290
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	5 cut(s)	116, 272, 392, 469, 490
BstV2I	GAAGAC	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	66, 86, 402
BtgI	CCRYGG	1 cut(s)	117
Cac8I	GCNNGC	5 cut(s)	112, 156, 346, 400, 471
Cfr10I	RCCGGY	2 cut(s)	66, 86
Csp6I	GTAC	1 cut(s)	578
CviAII	CATG	4 cut(s)	118, 178, 345, 668
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	2 cut(s)	354, 446
DpnI	GATC	2 cut(s)	147, 584
DpnII	GATC	2 cut(s)	145, 582
DraI	TTTAAA	1 cut(s)	540
EaeI	YGGCCR	2 cut(s)	64, 400
Eam1104I	CTCTTC	2 cut(s)	182, 215
EarI	CTCTTC	2 cut(s)	182, 215
Eco130I	CCWWGG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	125, 440
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	4 cut(s)	121, 181, 348, 671
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	4 cut(s)	117, 177, 344, 667
FauI	CCCGC	1 cut(s)	644
Fnu4HI	GCNGC	7 cut(s)	6, 105, 108, 261, 381, 483, 504
Fsp4HI	GCNGC	7 cut(s)	6, 105, 108, 261, 381, 483, 504
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	7 cut(s)	6, 105, 108, 261, 381, 483, 504
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	66, 86, 402
HapII	CCGG	4 cut(s)	35, 60, 67, 87
Hin1II	CATG	4 cut(s)	121, 181, 348, 671
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	2 cut(s)	165, 244
HpaII	CCGG	4 cut(s)	35, 60, 67, 87
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	3 cut(s)	374, 509, 511
Hpy8I	GTNNAC	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	9 cut(s)	8, 114, 154, 292, 344, 380, 469, 574, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 479
HpyF3I	CTNAG	2 cut(s)	354, 446
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	4 cut(s)	121, 181, 348, 671
Kzo9I	GATC	2 cut(s)	145, 582
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	5 cut(s)	116, 272, 392, 469, 490
LweI	GCATC	2 cut(s)	367, 586
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	147, 584
MbiI	CCGCTC	1 cut(s)	651
MboI	GATC	2 cut(s)	145, 582
MboII	GAAGA	9 cut(s)	146, 199, 214, 217, 232, 242, 402, 605, 620
MhlI	GDGCHC	2 cut(s)	116, 627
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	4 cut(s)	304, 406, 489, 548
MluNI	TGGCCA	1 cut(s)	402
MnlI	CCTC	8 cut(s)	5, 13, 35, 183, 359, 447, 511, 539
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	2 cut(s)	539, 551
Msp20I	TGGCCA	1 cut(s)	402
MspI	CCGG	4 cut(s)	35, 60, 67, 87
MspR9I	CCNGG	3 cut(s)	36, 127, 442
MvaI	CCWGG	2 cut(s)	127, 442
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	350, 479
NciI	CCSGG	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	145, 582
NlaIII	CATG	4 cut(s)	121, 181, 348, 671
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	2 cut(s)	181, 348
PaeI	GCATGC	1 cut(s)	348
PaeR7I	CTCGAG	1 cut(s)	509
PfeI	GAWTC	2 cut(s)	165, 244
PfoI	TCCNGGA	1 cut(s)	125
PkrI	GCNGC	7 cut(s)	7, 106, 109, 262, 382, 484, 505
Ppu21I	YACGTR	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	125, 440
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	125, 440
PstI	CTGCAG	2 cut(s)	10, 294
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
SaqAI	TTAA	2 cut(s)	539, 551
SatI	GCNGC	7 cut(s)	6, 105, 108, 261, 381, 483, 504
Sau3AI	GATC	2 cut(s)	145, 582
ScrFI	CCNGG	3 cut(s)	36, 127, 442
SduI	GDGCHC	2 cut(s)	116, 627
SetI	ASST	9 cut(s)	29, 194, 213, 240, 265, 343, 443, 475, 505
SfaNI	GCATC	2 cut(s)	367, 586
SfcI	CTRYAG	2 cut(s)	6, 290
Sfr274I	CTCGAG	1 cut(s)	509
SlaI	CTCGAG	1 cut(s)	509
SmlI	CTYRAG	3 cut(s)	255, 276, 509
SmoI	CTYRAG	3 cut(s)	255, 276, 509
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	4 cut(s)	304, 406, 489, 548
SsiI	CCGC	3 cut(s)	108, 175, 651
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	3 cut(s)	34, 125, 440
StyI	CCWWGG	1 cut(s)	117
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	510
TasI	AATT	4 cut(s)	304, 406, 489, 548
TatI	WGTACW	1 cut(s)	577
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	2 cut(s)	165, 244
Tru1I	TTAA	2 cut(s)	539, 551
Tru9I	TTAA	2 cut(s)	539, 551
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	6 cut(s)	5, 104, 260, 380, 482, 503
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	4 cut(s)	215, 381, 435, 653
VneI	GTGCAC	1 cut(s)	112
XapI	RAATTY	3 cut(s)	304, 406, 489
XceI	RCATGY	2 cut(s)	181, 348
XhoI	CTCGAG	1 cut(s)	509
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.