Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000951.1

Orthogroup ID

OG0005521

Physical Location & Seq

Genomic Coordinates Reverse (-)

56534 .. 58435

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000951.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggaagagtgcaagaaactcggccttgctagaggtattggagttagtaacttcacatgcagtatgctcgaggagcttctttccttcgccgaaatccctccggccgtcaaccaagcaaagggtgttcatgtcacggcttactctccgctcggagcagctagggctaaatggggtgacaatagggttttggggtcagatgtgatcgaagagattgccctagccagaggaaaaacaactgctcagatatcattgagatgggtgtatgaacaaggtgtgagcatagtaacaaaaagctacaacaaggaaagaatgaggcagaaccttgacatcttcgacttctgcttgaccgaggaggaattggagaagatgaatcacctcgtgatctccgcctctgattccggcgaccaccggcacggcgccctccctaatctcgctcgctctctcagcaaaccctatctccttctgctaggcttcgtcgtctccgcgatgatgaagttttcgcagactactgcgaaccagattcgatcagctcctcctacaaagcctcaacgatgccaactcggactctgttcacctataactgactcaggtagtacctctctccttctcgctttttcttcaattccggctttgtttgcttctgattctcatttcggagccctagaatcctctgttttggtttcggagtattcggaatttggacggaacttcatttttgttcggtttcgattttggacgtttagtgagactattagaactcaaaacggggttttgtttgtcgttttggcttgctcaatgagcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 map00053

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

268

Amino Acids

29.55

Weight (kDa)

7.63

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17290
malus_domestica	MD10G1146100.v1.1
prunus_persica	Prupe.8G184500_v2.0.a1
pyrus_communis	pycom05g14630
rosa_chinensis	RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011
rosa_laevigata	RLG00000012930 RLG00000022524
rosa_multiflora	Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790
rosa_rugosa	Rorug06G0143600
rosa_samantha	Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200
rosa_wichuraiana	Rw6G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	148
AccII	CGCG	1 cut(s)	485
AciI	CCGC	3 cut(s)	146, 387, 483
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	695
AcyI	GRCGYC	1 cut(s)	417
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	621
AluBI	AGCT	5 cut(s)	76, 158, 294, 530, 801
AluI	AGCT	5 cut(s)	76, 158, 294, 530, 801
Alw26I	GTCTC	2 cut(s)	484, 740
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	22, 102
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	695
AspLEI	GCGC	1 cut(s)	419
AsuHPI	GGTGA	3 cut(s)	185, 365, 564
AvaI	CYCGRG	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	661
BauI	CACGAG	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	249
BceAI	ACGGC	3 cut(s)	89, 150, 430
BcgI	CGANNNNNNTGC	5 cut(s)	35, 49, 83, 194, 228
BcoDI	GTCTC	2 cut(s)	484, 740
BfaI	CTAG	5 cut(s)	30, 159, 218, 467, 662
BfoI	RGCGCY	1 cut(s)	420
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	418, 658
BmsI	GCATC	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	3 cut(s)	254, 457, 600
BseRI	GAGGAG	3 cut(s)	86, 365, 522
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	485
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	24, 104
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	4 cut(s)	101, 399, 409, 626
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	484, 740
BsmBI	CGTCTC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	24, 104
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	3 cut(s)	201, 381, 524
BspACI	CCGC	3 cut(s)	146, 387, 483
BspANI	GGCC	2 cut(s)	24, 104
BspCNI	CTCAG	3 cut(s)	253, 456, 599
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	2 cut(s)	418, 658
BspT107I	GGYRCC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	408
BssAI	RCCGGY	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	3 cut(s)	201, 381, 524
BssNI	GRCGYC	1 cut(s)	417
BssSI	CACGAG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	436, 790
BstDEI	CTNAG	3 cut(s)	240, 443, 586
BstFNI	CGCG	1 cut(s)	485
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	3 cut(s)	204, 384, 527
BstMAI	GTCTC	2 cut(s)	484, 740
BstMBI	GATC	3 cut(s)	201, 381, 524
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 161, 444, 635, 798
BstNSI	RCATGY	1 cut(s)	60
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	1 cut(s)	167
BstZI	CGGCCG	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	24, 104
BtgZI	GCGATG	1 cut(s)	500
Cac8I	GCNNGC	2 cut(s)	436, 790
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	2 cut(s)	57, 128
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	3 cut(s)	240, 443, 586
DinI	GGCGCC	1 cut(s)	418
DpnI	GATC	3 cut(s)	203, 383, 526
DpnII	GATC	3 cut(s)	201, 381, 524
DraIII	CACNNNGTG	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	102
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	376
EclXI	CGGCCG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	661
Eco32I	GATATC	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	661
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	2 cut(s)	60, 131
FaiI	YATR	6 cut(s)	58, 65, 129, 264, 281, 578
FatI	CATG	2 cut(s)	56, 127
Fnu4HI	GCNGC	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	661
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	5 cut(s)	30, 159, 218, 467, 662
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	24, 104
HapII	CCGG	4 cut(s)	101, 399, 409, 626
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	2 cut(s)	60, 131
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	7 cut(s)	370, 395, 520, 564, 584, 644, 665
HpaII	CCGG	4 cut(s)	101, 399, 409, 626
HphI	GGTGA	3 cut(s)	185, 365, 564
Hpy166II	GTNNAC	2 cut(s)	109, 572
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	2 cut(s)	109, 572
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	3 cut(s)	94, 470, 614
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	2 cut(s)	12, 60
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 161, 444, 635, 798
HpyF3I	CTNAG	3 cut(s)	240, 443, 586
HpySE526I	ACGT	1 cut(s)	737
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	60, 131
HspAI	GCGC	1 cut(s)	417
KasI	GGCGCC	1 cut(s)	416
Kzo9I	GATC	3 cut(s)	201, 381, 524
LmnI	GCTCC	4 cut(s)	73, 152, 535, 656
LpnPI	CCDG	7 cut(s)	114, 235, 412, 422, 530, 573, 639
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	5 cut(s)	30, 159, 218, 467, 662
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	4 cut(s)	47, 130, 173, 283
MalI	GATC	3 cut(s)	203, 383, 526
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	3 cut(s)	201, 381, 524
MboII	GAAGA	5 cut(s)	17, 218, 322, 376, 609
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	3 cut(s)	356, 621, 695
Mly113I	GGCGCC	1 cut(s)	417
MlyI	GAGTC	2 cut(s)	558, 578
MslI	CAYNNNNRTG	1 cut(s)	253
MspI	CCGG	4 cut(s)	101, 399, 409, 626
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	5 cut(s)	73, 161, 444, 635, 798
NarI	GGCGCC	1 cut(s)	417
NdeII	GATC	3 cut(s)	201, 381, 524
NlaIII	CATG	2 cut(s)	60, 131
NlaIV	GGNNCC	2 cut(s)	418, 658
NmuCI	GTSAC	2 cut(s)	130, 173
NspI	RCATGY	1 cut(s)	60
PaeR7I	CTCGAG	1 cut(s)	68
PfeI	GAWTC	5 cut(s)	370, 395, 520, 644, 665
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	2 cut(s)	558, 578
PluTI	GGCGCC	1 cut(s)	420
PpsI	GAGTC	2 cut(s)	558, 578
PspN4I	GGNNCC	2 cut(s)	418, 658
PspXI	VCTCGAGB	1 cut(s)	68
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	253
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	3 cut(s)	201, 381, 524
SchI	GAGTC	2 cut(s)	558, 578
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	1 cut(s)	542
SfoI	GGCGCC	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	356, 621, 695
SsiI	CCGC	3 cut(s)	146, 387, 483
SspDI	GGCGCC	1 cut(s)	416
SspMI	CTAG	5 cut(s)	30, 159, 218, 467, 662
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	5 cut(s)	69, 204, 333, 523, 727
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	3 cut(s)	356, 621, 695
TfiI	GAWTC	5 cut(s)	370, 395, 520, 644, 665
TseFI	GTSAC	2 cut(s)	130, 173
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	2 cut(s)	130, 173
TspDTI	ATGAA	5 cut(s)	116, 279, 383, 506, 700
TspGWI	ACGGA	1 cut(s)	718
XapI	RAATTY	1 cut(s)	695
XceI	RCATGY	1 cut(s)	60
XhoI	CTCGAG	1 cut(s)	68
XspI	CTAG	5 cut(s)	30, 159, 218, 467, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.