ThiF family
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g17290 |
| malus_domestica | MD10G1146100.v1.1 |
| prunus_persica | Prupe.8G184500_v2.0.a1 |
| pyrus_communis | pycom05g14630 |
| rosa_chinensis | RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011 |
| rosa_laevigata | RLG00000012930 RLG00000022524 |
| rosa_multiflora | Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041 |
| rosa_roxburghii | Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790 |
| rosa_rugosa | Rorug06G0143600 |
| rosa_samantha | Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200 |
| rosa_wichuraiana | Rw6G026250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 166 |
| AccII | CGCG | 1 cut(s) | 351 |
| AccIII | TCCGGA | 1 cut(s) | 316 |
| AciI | CCGC | 4 cut(s) | 221, 326, 339, 351 |
| AcsI | RAATTY | 1 cut(s) | 20 |
| AcuI | CTGAAG | 1 cut(s) | 129 |
| AfaI | GTAC | 1 cut(s) | 266 |
| AluBI | AGCT | 4 cut(s) | 48, 100, 286, 290 |
| AluI | AGCT | 4 cut(s) | 48, 100, 286, 290 |
| Aor13HI | TCCGGA | 1 cut(s) | 316 |
| ApeKI | GCWGC | 1 cut(s) | 341 |
| ApoI | RAATTY | 1 cut(s) | 20 |
| AspLEI | GCGC | 1 cut(s) | 351 |
| AsuNHI | GCTAGC | 1 cut(s) | 286 |
| BbvI | GCAGC | 1 cut(s) | 353 |
| BccI | CCATC | 1 cut(s) | 117 |
| BfaI | CTAG | 3 cut(s) | 42, 287, 364 |
| BisI | GCNGC | 2 cut(s) | 222, 342 |
| BlsI | GCNGC | 2 cut(s) | 223, 343 |
| BmsI | GCATC | 1 cut(s) | 219 |
| BmtI | GCTAGC | 1 cut(s) | 290 |
| BsaWI | WCCGGW | 1 cut(s) | 316 |
| Bse3DI | GCAATG | 2 cut(s) | 138, 351 |
| BseAI | TCCGGA | 1 cut(s) | 316 |
| BseMI | GCAATG | 2 cut(s) | 138, 351 |
| BseMII | CTCAG | 2 cut(s) | 206, 216 |
| BseRI | GAGGAG | 1 cut(s) | 29 |
| BseXI | GCAGC | 1 cut(s) | 353 |
| BsgI | GTGCAG | 1 cut(s) | 30 |
| Bsh1236I | CGCG | 1 cut(s) | 351 |
| BsiSI | CCGG | 1 cut(s) | 317 |
| BslFI | GGGAC | 1 cut(s) | 93 |
| BsmFI | GGGAC | 1 cut(s) | 93 |
| Bsp13I | TCCGGA | 1 cut(s) | 316 |
| Bsp143I | GATC | 1 cut(s) | 58 |
| BspACI | CCGC | 4 cut(s) | 221, 326, 339, 351 |
| BspCNI | CTCAG | 2 cut(s) | 205, 217 |
| BspEI | TCCGGA | 1 cut(s) | 316 |
| BspFNI | CGCG | 1 cut(s) | 351 |
| BspOI | GCTAGC | 1 cut(s) | 290 |
| BsrDI | GCAATG | 2 cut(s) | 138, 351 |
| BssMI | GATC | 1 cut(s) | 58 |
| Bst6I | CTCTTC | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 3 cut(s) | 288, 353, 357 |
| BstDEI | CTNAG | 2 cut(s) | 192, 225 |
| BstFNI | CGCG | 1 cut(s) | 351 |
| BstHHI | GCGC | 1 cut(s) | 351 |
| BstKTI | GATC | 1 cut(s) | 61 |
| BstMBI | GATC | 1 cut(s) | 58 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 97, 155 |
| BstUI | CGCG | 1 cut(s) | 351 |
| BstV1I | GCAGC | 1 cut(s) | 353 |
| Cac8I | GCNNGC | 3 cut(s) | 288, 353, 357 |
| CfoI | GCGC | 1 cut(s) | 351 |
| Csp6I | GTAC | 1 cut(s) | 265 |
| CviJI | RGCY | 7 cut(s) | 48, 100, 137, 224, 286, 290, 355 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 100, 137, 224, 286, 290, 355 |
| CviQI | GTAC | 1 cut(s) | 265 |
| DdeI | CTNAG | 2 cut(s) | 192, 225 |
| DpnI | GATC | 1 cut(s) | 60 |
| DpnII | GATC | 1 cut(s) | 58 |
| Eam1104I | CTCTTC | 1 cut(s) | 89 |
| EarI | CTCTTC | 1 cut(s) | 89 |
| EciI | GGCGGA | 1 cut(s) | 341 |
| Eco57I | CTGAAG | 1 cut(s) | 129 |
| FaiI | YATR | 1 cut(s) | 302 |
| FaqI | GGGAC | 1 cut(s) | 93 |
| FauI | CCCGC | 1 cut(s) | 344 |
| FblI | GTMKAC | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 2 cut(s) | 222, 342 |
| Fsp4HI | GCNGC | 2 cut(s) | 222, 342 |
| FspBI | CTAG | 3 cut(s) | 42, 287, 364 |
| GlaI | GCGC | 1 cut(s) | 350 |
| GluI | GCNGC | 2 cut(s) | 222, 342 |
| HapII | CCGG | 1 cut(s) | 317 |
| HhaI | GCGC | 1 cut(s) | 351 |
| Hin6I | GCGC | 1 cut(s) | 349 |
| HinP1I | GCGC | 1 cut(s) | 349 |
| HindIII | AAGCTT | 1 cut(s) | 46 |
| HinfI | GANTC | 2 cut(s) | 81, 131 |
| HpaII | CCGG | 1 cut(s) | 317 |
| Hpy166II | GTNNAC | 1 cut(s) | 167 |
| Hpy188I | TCNGA | 1 cut(s) | 58 |
| Hpy188III | TCNNGA | 2 cut(s) | 42, 317 |
| Hpy8I | GTNNAC | 1 cut(s) | 167 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 11 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 97, 155 |
| HpyF3I | CTNAG | 2 cut(s) | 192, 225 |
| HspAI | GCGC | 1 cut(s) | 349 |
| Kpn2I | TCCGGA | 1 cut(s) | 316 |
| Kzo9I | GATC | 1 cut(s) | 58 |
| LpnPI | CCDG | 4 cut(s) | 57, 179, 308, 330 |
| Lsp1109I | GCAGC | 1 cut(s) | 353 |
| LweI | GCATC | 1 cut(s) | 219 |
| MaeI | CTAG | 3 cut(s) | 42, 287, 364 |
| MalI | GATC | 1 cut(s) | 60 |
| MboI | GATC | 1 cut(s) | 58 |
| MboII | GAAGA | 4 cut(s) | 43, 76, 121, 124 |
| MluCI | AATT | 1 cut(s) | 20 |
| MlyI | GAGTC | 2 cut(s) | 75, 140 |
| MnlI | CCTC | 3 cut(s) | 7, 168, 267 |
| MroI | TCCGGA | 1 cut(s) | 316 |
| MslI | CAYNNNNRTG | 1 cut(s) | 299 |
| MspI | CCGG | 1 cut(s) | 317 |
| MvnI | CGCG | 1 cut(s) | 351 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 97, 155 |
| NdeII | GATC | 1 cut(s) | 58 |
| NheI | GCTAGC | 1 cut(s) | 286 |
| PkrI | GCNGC | 2 cut(s) | 223, 343 |
| PleI | GAGTC | 2 cut(s) | 75, 139 |
| PpsI | GAGTC | 2 cut(s) | 75, 139 |
| RsaI | GTAC | 1 cut(s) | 266 |
| RsaNI | GTAC | 1 cut(s) | 265 |
| RseI | CAYNNNNRTG | 1 cut(s) | 299 |
| SatI | GCNGC | 2 cut(s) | 222, 342 |
| Sau3AI | GATC | 1 cut(s) | 58 |
| SchI | GAGTC | 2 cut(s) | 75, 140 |
| SetI | ASST | 7 cut(s) | 50, 76, 102, 179, 205, 288, 292 |
| SfaNI | GCATC | 1 cut(s) | 219 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 299 |
| Sse9I | AATT | 1 cut(s) | 20 |
| SsiI | CCGC | 4 cut(s) | 221, 326, 339, 351 |
| SspMI | CTAG | 3 cut(s) | 42, 287, 364 |
| TasI | AATT | 1 cut(s) | 20 |
| TauI | GCSGC | 1 cut(s) | 224 |
| TseI | GCWGC | 1 cut(s) | 341 |
| XapI | RAATTY | 1 cut(s) | 20 |
| XbaI | TCTAGA | 1 cut(s) | 41 |
| XmiI | GTMKAC | 1 cut(s) | 166 |
| XspI | CTAG | 3 cut(s) | 42, 287, 364 |