Rroxscaffold_6G00389110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005521
Physical Location & Seq
Reverse (-)
2473222 .. 2474170
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389110.1

Sequence Viewer

Length: 183 bp
ATGGACAACCAATACCACAGAGACATCGACGATGTGAAGCCGGTTCCAACACCGGTCCGCTACCGATCCGCGGCAGAATTTGGGAGAACCGACCAGGTCTTTCCTCTCTTCAAAACTGGTCTCGGCCTTCCCCTCGTCGTGAGAAAGCAACAGACCCCGGCCTCCTCCATTCCGGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.71

Weight (kDa)

9.39

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AciI CCGC 3 cut(s) 58, 69, 71
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 70
AgeI ACCGGT 1 cut(s) 52
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 15, 125
AlwI GGATC 1 cut(s) 60
AoxI GGCC 2 cut(s) 124, 159
ApoI RAATTY 1 cut(s) 77
AsiGI ACCGGT 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 2 cut(s) 15, 125
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 95, 158
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 2 cut(s) 95, 158
BpuMI CCSGG 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 69, 156
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse118I RCCGGY 2 cut(s) 40, 52
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 69, 156
BseLI CCNNNNNNNGG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 126, 161
BshTI ACCGGT 1 cut(s) 52
BsiSI CCGG 4 cut(s) 41, 53, 158, 173
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 15, 125
BsnI GGCC 2 cut(s) 126, 161
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 65
BspACI CCGC 3 cut(s) 58, 69, 71
BspANI GGCC 2 cut(s) 126, 161
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 2 cut(s) 40, 52
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 2 cut(s) 40, 52
BssECI CCNNGG 2 cut(s) 69, 156
BssMI GATC 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 1 cut(s) 68
BstMAI GTCTC 2 cut(s) 15, 125
BstMBI GATC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 93, 156
BstUI CGCG 1 cut(s) 71
BsuRI GGCC 2 cut(s) 126, 161
BtgI CCRYGG 1 cut(s) 69
Cfr10I RCCGGY 2 cut(s) 40, 52
Cfr13I GGNCC 1 cut(s) 55
Cfr42I CCGCGG 1 cut(s) 72
CpoI CGGWCCG 1 cut(s) 55
CsiI ACCWGGT 1 cut(s) 93
CspAI ACCGGT 1 cut(s) 52
CspI CGGWCCG 1 cut(s) 55
CviJI RGCY 4 cut(s) 40, 126, 161, 176
CviKI_1 RGCY 4 cut(s) 40, 126, 161, 176
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 126, 161
HapII CCGG 4 cut(s) 41, 53, 158, 173
HpaII CCGG 4 cut(s) 41, 53, 158, 173
Hpy188III TCNNGA 2 cut(s) 139, 180
Hpy99I CGWCG 2 cut(s) 32, 140
HpyAV CCTTC 1 cut(s) 137
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 1 cut(s) 65
LpnPI CCDG 6 cut(s) 54, 66, 80, 102, 107, 171
MabI ACCWGGT 1 cut(s) 93
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 1 cut(s) 100
MluCI AATT 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 4 cut(s) 114, 143, 172, 175
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 4 cut(s) 41, 53, 158, 173
MspR9I CCNGG 2 cut(s) 95, 158
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 71
NciI CCSGG 1 cut(s) 158
NdeII GATC 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 1 cut(s) 102
PflFI GACNNNGTC 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 95
Rsr2I CGGWCCG 1 cut(s) 55
RsrII CGGWCCG 1 cut(s) 55
SacII CCGCGG 1 cut(s) 72
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 95, 158
SetI ASST 1 cut(s) 99
SexAI ACCWGGT 1 cut(s) 93
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 1 cut(s) 55
Sse9I AATT 1 cut(s) 77
SsiI CCGC 3 cut(s) 58, 69, 71
StyD4I CCNGG 2 cut(s) 93, 156
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 77
TauI GCSGC 1 cut(s) 74
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.