Rh6BG259600
BZIP Family

transcription factor PosF21

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005521
Physical Location & Seq
Reverse (-)
47325926 .. 47326507
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG259600.1

Sequence Viewer

Length: 309 bp
ATGGCTTCCAGGATTGAAGACATAAATGATCCAAAGCAAGCGAAAAGAATCAGCAACCGCATGTCAAAGAAGAGGTCAAATATGAAGAAGAAGCTATATTTGAAGAGACTTGAAGAAAAGGTAGTGAATCTGACATCTCAAGCAGCTATTCTATCTGCTCAAGTGACTTTCCTGCAGACAAACAAAAATGTACTCCAGTTTGAGATTATGTGCCTGAAACTACGTGCATGCCTCGCTAAGAAAGAGAATGAAGTTCAAGATGGTAAGCGATATTCTTTACTACAACTCTATAATATGGCCGGTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

102

Amino Acids

11.81

Weight (kDa)

10.06

Isoelectric Point (pI)

68.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 10 - 59 3.2e-06 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 58
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 297
AfaI GTAC 1 cut(s) 192
AgsI TTSAA 4 cut(s) 17, 103, 113, 257
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 2 cut(s) 94, 146
AluI AGCT 2 cut(s) 94, 146
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 143
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 155
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 1 cut(s) 307
BfmI CTRYAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 123, 144
BsaAI YACGTR 1 cut(s) 224
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 155
BshFI GGCC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 100
BsnI GGCC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 58
BspANI GGCC 1 cut(s) 299
BspMAI CTGCAG 1 cut(s) 177
BspPI GGATC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 299
BssMI GATC 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 65, 98
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 39, 229
BstDEI CTNAG 1 cut(s) 237
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 2 cut(s) 64, 231
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 299
Cac8I GCNNGC 2 cut(s) 39, 229
Cfr10I RCCGGY 1 cut(s) 299
Csp6I GTAC 1 cut(s) 191
CviAII CATG 2 cut(s) 61, 228
CviJI RGCY 4 cut(s) 5, 94, 146, 299
CviKI_1 RGCY 4 cut(s) 5, 94, 146, 299
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 65, 98
EarI CTCTTC 2 cut(s) 65, 98
EcoRII CCWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 64, 231
FaiI YATR 8 cut(s) 23, 62, 83, 97, 209, 229, 291, 296
FatI CATG 2 cut(s) 60, 227
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 307
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 300
Hin1II CATG 2 cut(s) 64, 231
HinfI GANTC 2 cut(s) 48, 127
HpaII CCGG 1 cut(s) 300
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 175, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 64, 231
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 22, 185, 209, 227
Lsp1109I GCAGC 1 cut(s) 155
MaeI CTAG 1 cut(s) 307
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 6 cut(s) 29, 82, 97, 100, 115, 125
MnlI CCTC 2 cut(s) 66, 242
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 64, 231
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 2 cut(s) 64, 231
PaeI GCATGC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 48, 127
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PstI CTGCAG 1 cut(s) 177
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 10
SetI ASST 5 cut(s) 77, 96, 123, 148, 226
SfcI CTRYAG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 138, 159
SmoI CTYRAG 2 cut(s) 138, 159
SphI GCATGC 1 cut(s) 231
SsiI CCGC 1 cut(s) 58
SspMI CTAG 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 8
TaiI ACGT 1 cut(s) 226
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 2 cut(s) 48, 127
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 98, 264
XceI RCATGY 2 cut(s) 64, 231
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.