Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005521

Physical Location & Seq

Genomic Coordinates Reverse (-)

18303742 .. 18304824

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G184500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTGATTCAACTCCCCCCAAAAATCACAGCGCTAGCTCAATCACCAGCATGAAGAAAAACCCTCCTGCAGTTCTTGCAGACATGGCCCGACACGATCCAAAGCGGGCGAAGAGGATTATGACGAACAGGAGGTCAGCTATGAAGGCAAAGCAGAGGAAGAAGATGTATGTTAGTGCGCTTGAATATAACTTGGAAAGGTTGTACTGTGAAGCGGCTGCTCTGTCTGCTCGGTTGAATCTATGGATGACAGATGCCCTTTACATACATGCAGACAACAAGAGACTGAGGCAATGCCTGCACCATATTGTGCAACAAATTCGATTGCAAGACACCTTGATGGATGAGACTCAAAAAGAGATTCAAGATCTGAAAAGAATTGTTTGGTCACACAAGACCTCAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

137

Amino Acids

15.84

Weight (kDa)

10.1

Isoelectric Point (pI)

58.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17290
malus_domestica	MD10G1146100.v1.1
prunus_persica	Prupe.8G184500_v2.0.a1
pyrus_communis	pycom05g14630
rosa_chinensis	RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011
rosa_laevigata	RLG00000012930 RLG00000022524
rosa_multiflora	Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790
rosa_rugosa	Rorug06G0143600
rosa_samantha	Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200
rosa_wichuraiana	Rw6G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	106, 215
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	318
AfaI	GTAC	1 cut(s)	206
AfeI	AGCGCT	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	12, 185, 238, 365
AluBI	AGCT	2 cut(s)	39, 140
AluI	AGCT	2 cut(s)	39, 140
Alw26I	GTCTC	2 cut(s)	277, 341
AlwI	GGATC	1 cut(s)	92
Aor51HI	AGCGCT	1 cut(s)	34
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	318
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	2 cut(s)	35, 181
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BcoDI	GTCTC	2 cut(s)	277, 341
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	36
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	2 cut(s)	216, 219
BlsI	GCNGC	2 cut(s)	217, 220
BmgT120I	GGNCC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	244
BmtI	GCTAGC	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	299
BseGI	GGATG	2 cut(s)	252, 349
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	277, 341
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	97, 367
BspACI	CCGC	2 cut(s)	106, 215
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	299
BssMI	GATC	2 cut(s)	97, 367
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	2 cut(s)	77, 298
BstC8I	GCNNGC	3 cut(s)	37, 108, 299
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	252, 349
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 181
BstKTI	GATC	2 cut(s)	100, 370
BstMAI	GTCTC	2 cut(s)	277, 341
BstMBI	GATC	2 cut(s)	97, 367
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 86, 146, 227, 298
BstNSI	RCATGY	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	252, 349
Cac8I	GCNNGC	3 cut(s)	37, 108, 299
CfoI	GCGC	2 cut(s)	35, 181
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	52, 85, 269
CviJI	RGCY	5 cut(s)	5, 39, 89, 140, 218
CviKI_1	RGCY	5 cut(s)	5, 39, 89, 140, 218
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	2 cut(s)	99, 369
DpnII	GATC	2 cut(s)	97, 367
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco47III	AGCGCT	1 cut(s)	34
FaeI	CATG	3 cut(s)	55, 88, 272
FatI	CATG	3 cut(s)	51, 84, 268
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	216, 219
FokI	GGATG	2 cut(s)	259, 356
Fsp4HI	GCNGC	2 cut(s)	216, 219
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	34, 180
GluI	GCNGC	2 cut(s)	216, 219
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	89
HhaI	GCGC	2 cut(s)	35, 181
Hin1II	CATG	3 cut(s)	55, 88, 272
Hin6I	GCGC	2 cut(s)	33, 179
HinP1I	GCGC	2 cut(s)	33, 179
HinfI	GANTC	4 cut(s)	8, 238, 349, 361
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	1 cut(s)	365
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	6 cut(s)	71, 80, 272, 301, 313, 328
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 86, 146, 227, 298
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	55, 88, 272
HspAI	GCGC	2 cut(s)	33, 179
Kzo9I	GATC	2 cut(s)	97, 367
LpnPI	CCDG	4 cut(s)	61, 81, 115, 311
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	2 cut(s)	99, 369
MboI	GATC	2 cut(s)	97, 367
MboII	GAAGA	4 cut(s)	67, 124, 172, 175
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	3 cut(s)	318, 378, 406
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	6 cut(s)	75, 108, 126, 150, 282, 409
MslI	CAYNNNNRTG	2 cut(s)	50, 338
MwoI	GCNNNNNNNGC	5 cut(s)	77, 86, 146, 227, 298
NdeII	GATC	2 cut(s)	97, 367
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	55, 88, 272
NmuCI	GTSAC	1 cut(s)	387
NspI	RCATGY	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	8, 238, 361
PkrI	GCNGC	2 cut(s)	217, 220
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	2 cut(s)	50, 338
SatI	GCNGC	2 cut(s)	216, 219
Sau3AI	GATC	2 cut(s)	97, 367
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	343
SetI	ASST	6 cut(s)	41, 137, 142, 203, 338, 401
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	69
SmiMI	CAYNNNNRTG	2 cut(s)	50, 338
Sse9I	AATT	3 cut(s)	318, 378, 406
SsiI	CCGC	2 cut(s)	106, 215
SspMI	CTAG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	322
TasI	AATT	3 cut(s)	318, 378, 406
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	3 cut(s)	8, 238, 361
TseFI	GTSAC	1 cut(s)	387
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	387
TspDTI	ATGAA	2 cut(s)	68, 158
XapI	RAATTY	1 cut(s)	318
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.