Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005521

Physical Location & Seq

Genomic Coordinates Forward (+)

24018759 .. 24019697

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012930

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTTCCAGGATTGAAGACATAAATGATCCAAAGCAAGCGAAAAGAATCAGCAACCGCATGTCAAAGAAGAGGTCAAATATGAAGAAGAAGCTATATTTGAAGAGACTTGAAGAAAAGGTAGTGAATCTGACATCTCAAGCAGCTATTCTATCTGCTCAAGTGACTTTCCTGCAGACAAACAAAAATTTACTCCAGTTTGAGATTATGTGCCTGAAACTACGTGCATGCCTCGCTAAGAAAGAGAATGAAGTTCAAGATGCTCTGATTAAAGAACTCGAATCCACCATTCTCAATTTGAAATCAAGGAATGGAAACAGCACATCATGCAATGGAGGTGGCCTTGACCTCGGAAAAGTTTTCCCCTTCAAGCCTGTTCACAGAGGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

131

Amino Acids

14.74

Weight (kDa)

9.97

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	10 - 59	5.7e-06	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17290
malus_domestica	MD10G1146100.v1.1
prunus_persica	Prupe.8G184500_v2.0.a1
pyrus_communis	pycom05g14630
rosa_chinensis	RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011
rosa_laevigata	RLG00000012930 RLG00000022524
rosa_multiflora	Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790
rosa_rugosa	Rorug06G0143600
rosa_samantha	Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200
rosa_wichuraiana	Rw6G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	1 cut(s)	389
AgsI	TTSAA	6 cut(s)	17, 103, 113, 257, 301, 370
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	2 cut(s)	94, 146
AluI	AGCT	2 cut(s)	94, 146
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	179
BpuEI	CTTGAG	2 cut(s)	123, 144
BsaAI	YACGTR	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	155
BshFI	GGCC	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	10
Bst6I	CTCTTC	2 cut(s)	65, 98
BstAPI	GCANNNNNTGC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	39, 229
BstDEI	CTNAG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 327
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	2 cut(s)	64, 231
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	39, 229
Csp6I	GTAC	1 cut(s)	388
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	3 cut(s)	61, 228, 327
CviJI	RGCY	5 cut(s)	5, 94, 146, 342, 373
CviKI_1	RGCY	5 cut(s)	5, 94, 146, 342, 373
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	65, 98
EarI	CTCTTC	2 cut(s)	65, 98
EcoRII	CCWGG	1 cut(s)	8
FaeI	CATG	3 cut(s)	64, 231, 330
FaiI	YATR	7 cut(s)	23, 62, 83, 97, 209, 229, 328
FatI	CATG	3 cut(s)	60, 227, 326
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	64, 231, 330
HinfI	GANTC	3 cut(s)	48, 127, 281
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	132, 267, 353
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	175, 227, 330
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 327
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	3 cut(s)	64, 231, 330
Kzo9I	GATC	1 cut(s)	28
LpnPI	CCDG	5 cut(s)	22, 185, 209, 227, 387
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	6 cut(s)	29, 82, 97, 100, 115, 125
MluCI	AATT	2 cut(s)	187, 295
MnlI	CCTC	5 cut(s)	66, 242, 329, 359, 377
MseI	TTAA	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	233, 327
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	3 cut(s)	64, 231, 330
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	2 cut(s)	64, 231
PaeI	GCATGC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	48, 127, 281
PfoI	TCCNGGA	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	177
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	7 cut(s)	77, 96, 123, 148, 226, 340, 351
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	138, 159
SmoI	CTYRAG	2 cut(s)	138, 159
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	2 cut(s)	187, 295
SsiI	CCGC	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	8
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	187, 295
TfiI	GAWTC	3 cut(s)	48, 127, 281
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	98, 264
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	2 cut(s)	64, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.