Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005521

Physical Location & Seq

Genomic Coordinates Forward (+)

50269245 .. 50273705

Gene Structure 4461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG317200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAGGGAGAGAGCTCACATTACCGTTGAACGTCAAGAGGACCAAACTCCAAGAAATCTTACGAGCGAAAACCGAACACAACCTAGGGAGAAAAGTGATGGCACCATCTTTTCAATTGTTATGTGTTTAGGAGTGCGGAGAGAGAGAGAGCGGAGTGCAGAGGAGAAATTTCCCCCGAACGCTCTCTCTGGAAGCTTCTTCTCCGATCAAGTTTTCACAGGTTTGGGACTCTTCTCGCTGATAGAGCTTTGTAGGAAGAAGATAGATAGACGGGGAGAGTCAGCCATTGCTTCAGCAACGATAGCACAATGTAGAGGAGGTTGCTCTCAGGGAGTAGGTGGCGTAGAAAATGTAGCGCCTGAGATGCTAACAAGATGTGGTGTTGGTCGCCCTCTATTGTACGATTATCACAAAGTAGAGCTAGCTAACACGAATATGTTATTCTTTCGTCCAGAACAGGTTCAACATCTTATGGAGAAATGCTTACCCTTTCACATTAGTCTTGACCAATGCATTAAGGCCTTAACATATCTGCACACATTACACCACTCGTCACACTTACAGATTGCTTATTGCTCAAAGATTGGGGAAGCTGCAGGAAAAAAGGGTGGAAACCTCGACGCACAATTATCTTATCCAGTTGGCATGTTGAAGAATACAGCCTGGTCTCACTCTCTCCCTCTGTCACTATTTCAATTTCCATGTTTCTCAGAAGTAGCAGATAGCAATATGGCTGAACAAAATTCTTCTAGGAATGAACTGGCTAGGGAACTCATCCCTCAATGTGCTGCTCAAATATCTGAACTGGCTGCTCCCAAGAGAGAGGAAGTTATCCTCGAAGATTTAAACATGAGATTGAAAGAGCTCGAGTACGATGTGCAAGTGCAAATCAAACTGAAAGATGCCTTGGATGAAGAAACCACAAAGGAGCACGAGTTACTGATGAAAGTTTTGAGTGGGACAGGGTTTGGACAGCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071566 GO:0071569 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ThiF

Protein Analysis

327

Amino Acids

36.7

Weight (kDa)

5.98

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17290
malus_domestica	MD10G1146100.v1.1
prunus_persica	Prupe.8G184500_v2.0.a1
pyrus_communis	pycom05g14630
rosa_chinensis	RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011
rosa_laevigata	RLG00000012930 RLG00000022524
rosa_multiflora	Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790
rosa_rugosa	Rorug06G0143600
rosa_samantha	Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200
rosa_wichuraiana	Rw6G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	151
AciI	CCGC	2 cut(s)	136, 151
AcsI	RAATTY	2 cut(s)	167, 742
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	2 cut(s)	401, 872
AgsI	TTSAA	6 cut(s)	29, 114, 464, 652, 695, 859
AjnI	CCWGG	1 cut(s)	662
AjuI	GAANNNNNNNTTGG	2 cut(s)	890, 922
AluBI	AGCT	8 cut(s)	14, 195, 247, 421, 425, 593, 865, 976
AluI	AGCT	8 cut(s)	14, 195, 247, 421, 425, 593, 865, 976
Alw21I	GWGCWC	3 cut(s)	16, 867, 933
Alw26I	GTCTC	1 cut(s)	672
Ama87I	CYCGRG	1 cut(s)	866
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	3 cut(s)	593, 788, 809
ApoI	RAATTY	2 cut(s)	167, 742
Asp700I	GAANNNNTTC	1 cut(s)	459
AspA2I	CCTAGG	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	40
AsuNHI	GCTAGC	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	866
AvaII	GGWCC	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	2 cut(s)	16, 867
BauI	CACGAG	1 cut(s)	932
Bbv12I	GWGCWC	3 cut(s)	16, 867, 933
BbvI	GCAGC	3 cut(s)	580, 775, 796
BccI	CCATC	2 cut(s)	92, 113
BciT130I	CCWGG	1 cut(s)	664
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	4 cut(s)	84, 422, 750, 765
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	3 cut(s)	594, 789, 810
BlnI	CCTAGG	1 cut(s)	83
BlsI	GCNGC	3 cut(s)	595, 790, 811
Bme1390I	CCNGG	1 cut(s)	664
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	866
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	664
BmsI	GCATC	2 cut(s)	354, 892
BmtI	GCTAGC	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	83, 906
BsaXI	ACNNNNNCTCC	2 cut(s)	920, 950
Bse1I	ACTGG	3 cut(s)	638, 765, 810
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	664
BseDI	CCNNGG	2 cut(s)	83, 906
BseGI	GGATG	2 cut(s)	774, 916
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	341, 351, 723
BseNI	ACTGG	3 cut(s)	638, 765, 810
BseRI	GAGGAG	2 cut(s)	176, 330
BseXI	GCAGC	3 cut(s)	580, 775, 796
BsgI	GTGCAG	2 cut(s)	177, 518
BshFI	GGCC	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	3 cut(s)	16, 867, 933
BsiHKCI	CYCGRG	1 cut(s)	866
BslFI	GGGAC	2 cut(s)	240, 973
BsmAI	GTCTC	1 cut(s)	672
BsmFI	GGGAC	2 cut(s)	240, 973
BsnI	GGCC	1 cut(s)	521
Bso31I	GGTCTC	1 cut(s)	672
BsoBI	CYCGRG	1 cut(s)	866
Bsp1286I	GDGCHC	3 cut(s)	16, 867, 933
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	136, 151
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	3 cut(s)	340, 352, 722
BspLI	GGNNCC	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	598
BspOI	GCTAGC	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	672
BsrBI	CCGCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	638, 765, 810
BssECI	CCNNGG	2 cut(s)	83, 906
BssMI	GATC	1 cut(s)	205
BssSI	CACGAG	1 cut(s)	932
BssT1I	CCWWGG	2 cut(s)	83, 906
Bst2BI	CACGAG	1 cut(s)	932
Bst2UI	CCWGG	1 cut(s)	664
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	3 cut(s)	327, 360, 709
BstF5I	GGATG	2 cut(s)	774, 916
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	244, 302, 364
BstNI	CCWGG	1 cut(s)	664
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	1 cut(s)	662
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	3 cut(s)	580, 775, 796
BsuRI	GGCC	1 cut(s)	521
BtsCI	GGATG	2 cut(s)	774, 916
Cac8I	GCNNGC	1 cut(s)	423
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	2 cut(s)	400, 871
CviAII	CATG	3 cut(s)	646, 702, 850
CviQI	GTAC	2 cut(s)	400, 871
DdeI	CTNAG	3 cut(s)	327, 360, 709
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DraI	TTTAAA	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	2 cut(s)	14, 865
Eco130I	CCWWGG	2 cut(s)	83, 906
Eco147I	AGGCCT	1 cut(s)	521
Eco24I	GRGCYC	2 cut(s)	16, 867
Eco31I	GGTCTC	1 cut(s)	672
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	2 cut(s)	14, 865
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	866
EcoICRI	GAGCTC	2 cut(s)	14, 865
EcoRII	CCWGG	1 cut(s)	662
EcoT14I	CCWWGG	2 cut(s)	83, 906
EcoT22I	ATGCAT	1 cut(s)	515
EcoT38I	GRGCYC	2 cut(s)	16, 867
ErhI	CCWWGG	2 cut(s)	83, 906
FaeI	CATG	3 cut(s)	649, 705, 853
FaiI	YATR	8 cut(s)	122, 437, 473, 529, 647, 703, 731, 851
FaqI	GGGAC	2 cut(s)	240, 973
FatI	CATG	3 cut(s)	645, 701, 849
Fnu4HI	GCNGC	3 cut(s)	594, 789, 810
FokI	GGATG	2 cut(s)	761, 923
FriOI	GRGCYC	2 cut(s)	16, 867
Fsp4HI	GCNGC	3 cut(s)	594, 789, 810
FspBI	CTAG	4 cut(s)	84, 422, 750, 765
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	3 cut(s)	594, 789, 810
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	521
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	3 cut(s)	649, 705, 853
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	2 cut(s)	228, 278
Hpy188I	TCNGA	3 cut(s)	205, 712, 802
Hpy188III	TCNNGA	4 cut(s)	35, 189, 452, 503
Hpy99I	CGWCG	1 cut(s)	623
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	6 cut(s)	158, 513, 535, 596, 880, 886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	244, 302, 364
HpyF3I	CTNAG	3 cut(s)	327, 360, 709
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	3 cut(s)	649, 705, 853
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	817, 928
Lsp1109I	GCAGC	3 cut(s)	580, 775, 796
LweI	GCATC	2 cut(s)	354, 892
MaeI	CTAG	4 cut(s)	84, 422, 750, 765
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	3 cut(s)	552, 684, 936
MalI	GATC	1 cut(s)	207
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	1 cut(s)	205
MboII	GAAGA	8 cut(s)	190, 223, 268, 271, 664, 738, 851, 926
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	3 cut(s)	16, 867, 933
MluCI	AATT	5 cut(s)	114, 167, 626, 695, 742
MlyI	GAGTC	2 cut(s)	222, 287
Mph1103I	ATGCAT	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	3 cut(s)	516, 524, 845
MslI	CAYNNNNRTG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	664
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	664
MwoI	GCNNNNNNNGC	3 cut(s)	244, 302, 364
NdeII	GATC	1 cut(s)	205
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	649, 705, 853
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	2 cut(s)	552, 684
NsiI	ATGCAT	1 cut(s)	515
NspI	RCATGY	1 cut(s)	649
PaeR7I	CTCGAG	1 cut(s)	866
PceI	AGGCCT	1 cut(s)	521
PdmI	GAANNNNTTC	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	595, 790, 811
PleI	GAGTC	2 cut(s)	222, 286
PpsI	GAGTC	2 cut(s)	222, 286
Psp124BI	GAGCTC	2 cut(s)	16, 867
Psp6I	CCWGG	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	662
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	40
PspXI	VCTCGAGB	1 cut(s)	866
PstI	CTGCAG	1 cut(s)	598
RsaI	GTAC	2 cut(s)	401, 872
RsaNI	GTAC	2 cut(s)	400, 871
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	2 cut(s)	16, 867
SaqAI	TTAA	3 cut(s)	516, 524, 845
SatI	GCNGC	3 cut(s)	594, 789, 810
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	222, 287
ScrFI	CCNGG	1 cut(s)	664
SduI	GDGCHC	3 cut(s)	16, 867, 933
SfaNI	GCATC	2 cut(s)	354, 892
SfcI	CTRYAG	1 cut(s)	594
Sfr274I	CTCGAG	1 cut(s)	866
SinI	GGWCC	1 cut(s)	40
SlaI	CTCGAG	1 cut(s)	866
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	866, 977
SmoI	CTYRAG	2 cut(s)	866, 977
Sse9I	AATT	5 cut(s)	114, 167, 626, 695, 742
SseBI	AGGCCT	1 cut(s)	521
SsiI	CCGC	2 cut(s)	136, 151
SspMI	CTAG	4 cut(s)	84, 422, 750, 765
SstI	GAGCTC	2 cut(s)	16, 867
StuI	AGGCCT	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	662
StyI	CCWWGG	2 cut(s)	83, 906
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	3 cut(s)	618, 837, 867
TasI	AATT	5 cut(s)	114, 167, 626, 695, 742
Tru1I	TTAA	3 cut(s)	516, 524, 845
Tru9I	TTAA	3 cut(s)	516, 524, 845
TseFI	GTSAC	2 cut(s)	552, 684
TseI	GCWGC	3 cut(s)	593, 788, 809
Tsp45I	GTSAC	2 cut(s)	552, 684
TspDTI	ATGAA	3 cut(s)	771, 927, 959
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	167, 742
XceI	RCATGY	1 cut(s)	649
XhoI	CTCGAG	1 cut(s)	866
XmaJI	CCTAGG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	4 cut(s)	84, 422, 750, 765
Zsp2I	ATGCAT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.