Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005521

Physical Location & Seq

Genomic Coordinates Forward (+)

50299874 .. 50303244

Gene Structure 3371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG302200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGCTCAAAGATTGCCTTTTGCACAAGTCTCCATCCTTTATCTGGCAAGAAGAGTCAAATCAAAATCAGTGAGGGTGGAGTGCGGAGAGAGAGAGAGCGGAGTGCAGAGGAGAAATTTCCCCCGAACGCTCTCTCTGGAAGCTTCTTCTCCGATCAAGTTTTCACAGGTTTGGGACTCTTCTCGCTGATAGAGCTTTGTAGGAAGAAGATAGATAGACGGGGAGAGTCAGCCATTGCTTCAGCAACGATAGCACAATGTAGAGTAGTGCTGAAGCTTTGCAAAATCAAGGGAGGTTGCTCTCAGGGAGTAGGTGGCGTAGAAAATGTAGCGCCTGAGATGCTAACAAGATGTGGTGTTGGTCGCCCTCTATTGTACGATTATCACAAAGTAGAGCTAGCTAACACGAATATGTTATTCTTTCGTCCAGAACAGGTTCAACATCTTATGGAGAAATGCTTACCCTTTCACATTAGTCTTGACCAATGCATTAAGGCCTTAACATATCTGCACACATTACACCACTCGTCACACTTACAGATTGCTTATTGCTCAAAGATTGGGGAAGCTGCAGGAAAAAAGGGTGGAAACCTCGACGCACAATTATCTTATCCAGTTGGCATGTTGAAGAATACAGCCTGGTCTCACTCTCTCCCTCTGTCACTATTTCAATTTCCATGTTTCTCAGAAGTAGCAGATAGCAATATGGCTGAACAAAATTCTTCTAGGAATGAACTGGCTAGGGAACTCATCCCTCAATGTGCTGCTCAAATATCTGAACTGGCTGCTCCCAAGAGAGAGGAAGTTATCCTCGAAGATTTAAACATGAGATTGAAAGAGCTCGAGTACGATGTGCAAGTGCAAATCAAACTGAAAGATGCCTTGGATGAAGAAACCACAAAGGAGCACGAGTTACTGATGAAAGTTTTGAGTGGGACAGGGTTTGGACAGCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071566 GO:0071569 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ThiF

Protein Analysis

319

Amino Acids

35.4

Weight (kDa)

7.12

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17290
malus_domestica	MD10G1146100.v1.1
prunus_persica	Prupe.8G184500_v2.0.a1
pyrus_communis	pycom05g14630
rosa_chinensis	RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011
rosa_laevigata	RLG00000012930 RLG00000022524
rosa_multiflora	Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790
rosa_rugosa	Rorug06G0143600
rosa_samantha	Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200
rosa_wichuraiana	Rw6G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	100
AciI	CCGC	2 cut(s)	85, 100
AcsI	RAATTY	2 cut(s)	116, 718
AcuI	CTGAAG	2 cut(s)	225, 293
AfaI	GTAC	2 cut(s)	377, 848
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	440, 628, 671, 835
AjnI	CCWGG	1 cut(s)	638
AjuI	GAANNNNNNNTTGG	2 cut(s)	866, 898
AluBI	AGCT	8 cut(s)	144, 196, 277, 397, 401, 569, 841, 952
AluI	AGCT	8 cut(s)	144, 196, 277, 397, 401, 569, 841, 952
Alw21I	GWGCWC	2 cut(s)	843, 909
Alw26I	GTCTC	2 cut(s)	35, 648
Ama87I	CYCGRG	1 cut(s)	842
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	3 cut(s)	569, 764, 785
ApoI	RAATTY	2 cut(s)	116, 718
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	334
AsuNHI	GCTAGC	1 cut(s)	397
AvaI	CYCGRG	1 cut(s)	842
BanII	GRGCYC	2 cut(s)	8, 843
BauI	CACGAG	1 cut(s)	908
Bbv12I	GWGCWC	2 cut(s)	843, 909
BbvI	GCAGC	3 cut(s)	556, 751, 772
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	640
BcoDI	GTCTC	2 cut(s)	35, 648
BfaI	CTAG	3 cut(s)	398, 726, 741
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	335
BisI	GCNGC	3 cut(s)	570, 765, 786
BlsI	GCNGC	3 cut(s)	571, 766, 787
Bme1390I	CCNGG	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	842
BmrFI	CCNGG	1 cut(s)	640
BmsI	GCATC	2 cut(s)	330, 868
BmtI	GCTAGC	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	882
BsaXI	ACNNNNNCTCC	2 cut(s)	896, 926
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	3 cut(s)	614, 741, 786
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	640
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	3 cut(s)	34, 750, 892
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	3 cut(s)	317, 327, 699
BseNI	ACTGG	3 cut(s)	614, 741, 786
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	556, 751, 772
BsgI	GTGCAG	2 cut(s)	126, 494
BshFI	GGCC	1 cut(s)	497
BsiHKAI	GWGCWC	2 cut(s)	843, 909
BsiHKCI	CYCGRG	1 cut(s)	842
BslFI	GGGAC	2 cut(s)	189, 949
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	35, 648
BsmFI	GGGAC	2 cut(s)	189, 949
BsnI	GGCC	1 cut(s)	497
Bso31I	GGTCTC	1 cut(s)	648
BsoBI	CYCGRG	1 cut(s)	842
Bsp1286I	GDGCHC	3 cut(s)	8, 843, 909
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	2 cut(s)	85, 100
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	3 cut(s)	316, 328, 698
BspMAI	CTGCAG	1 cut(s)	574
BspOI	GCTAGC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	648
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	3 cut(s)	614, 741, 786
BssECI	CCNNGG	1 cut(s)	882
BssMI	GATC	1 cut(s)	154
BssSI	CACGAG	1 cut(s)	908
BssT1I	CCWWGG	1 cut(s)	882
Bst2BI	CACGAG	1 cut(s)	908
Bst2UI	CCWGG	1 cut(s)	640
Bst6I	CTCTTC	2 cut(s)	47, 185
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	303, 336, 685
BstF5I	GGATG	3 cut(s)	34, 750, 892
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	2 cut(s)	35, 648
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 251, 340
BstNI	CCWGG	1 cut(s)	640
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	638
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	556, 751, 772
BsuRI	GGCC	1 cut(s)	497
BtsCI	GGATG	3 cut(s)	34, 750, 892
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	1 cut(s)	334
CseI	GACGC	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	376, 847
CviAII	CATG	3 cut(s)	622, 678, 826
CviQI	GTAC	2 cut(s)	376, 847
DdeI	CTNAG	3 cut(s)	303, 336, 685
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DraI	TTTAAA	1 cut(s)	822
Eam1104I	CTCTTC	2 cut(s)	47, 185
EarI	CTCTTC	2 cut(s)	47, 185
Ecl136II	GAGCTC	1 cut(s)	841
Eco130I	CCWWGG	1 cut(s)	882
Eco147I	AGGCCT	1 cut(s)	497
Eco24I	GRGCYC	2 cut(s)	8, 843
Eco31I	GGTCTC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	2 cut(s)	225, 293
Eco88I	CYCGRG	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	841
EcoRII	CCWGG	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	882
EcoT22I	ATGCAT	1 cut(s)	491
EcoT38I	GRGCYC	2 cut(s)	8, 843
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	3 cut(s)	625, 681, 829
FaiI	YATR	7 cut(s)	413, 449, 505, 623, 679, 707, 827
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	2 cut(s)	189, 949
FatI	CATG	3 cut(s)	621, 677, 825
Fnu4HI	GCNGC	3 cut(s)	570, 765, 786
FokI	GGATG	3 cut(s)	21, 737, 899
FriOI	GRGCYC	2 cut(s)	8, 843
Fsp4HI	GCNGC	3 cut(s)	570, 765, 786
FspBI	CTAG	3 cut(s)	398, 726, 741
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	3 cut(s)	570, 765, 786
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	497
HgaI	GACGC	1 cut(s)	605
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	3 cut(s)	625, 681, 829
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HindIII	AAGCTT	2 cut(s)	142, 275
HinfI	GANTC	3 cut(s)	55, 177, 227
Hpy188I	TCNGA	3 cut(s)	154, 688, 778
Hpy188III	TCNNGA	3 cut(s)	138, 428, 479
Hpy99I	CGWCG	1 cut(s)	599
HpyCH4V	TGCA	8 cut(s)	24, 107, 282, 489, 511, 572, 856, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 251, 340
HpyF3I	CTNAG	3 cut(s)	303, 336, 685
Hsp92II	CATG	3 cut(s)	625, 681, 829
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	793, 904
Lsp1109I	GCAGC	3 cut(s)	556, 751, 772
LweI	GCATC	2 cut(s)	330, 868
MaeI	CTAG	3 cut(s)	398, 726, 741
MaeIII	GTNAC	3 cut(s)	528, 660, 912
MalI	GATC	1 cut(s)	156
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	1 cut(s)	154
MboII	GAAGA	9 cut(s)	64, 139, 172, 217, 220, 640, 714, 827, 902
MhlI	GDGCHC	3 cut(s)	8, 843, 909
MluCI	AATT	4 cut(s)	116, 602, 671, 718
MlyI	GAGTC	3 cut(s)	64, 171, 236
MnlI	CCTC	9 cut(s)	67, 103, 287, 378, 602, 666, 765, 793, 821
Mph1103I	ATGCAT	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	3 cut(s)	492, 500, 821
MslI	CAYNNNNRTG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	640
MwoI	GCNNNNNNNGC	3 cut(s)	193, 251, 340
NdeII	GATC	1 cut(s)	154
NheI	GCTAGC	1 cut(s)	397
NlaIII	CATG	3 cut(s)	625, 681, 829
NmuCI	GTSAC	2 cut(s)	528, 660
NsiI	ATGCAT	1 cut(s)	491
NspI	RCATGY	1 cut(s)	625
PaeR7I	CTCGAG	1 cut(s)	842
PceI	AGGCCT	1 cut(s)	497
PdmI	GAANNNNTTC	1 cut(s)	435
PkrI	GCNGC	3 cut(s)	571, 766, 787
PleI	GAGTC	3 cut(s)	63, 171, 235
PpsI	GAGTC	3 cut(s)	63, 171, 235
Psp124BI	GAGCTC	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	638
PspXI	VCTCGAGB	1 cut(s)	842
PstI	CTGCAG	1 cut(s)	574
RsaI	GTAC	2 cut(s)	377, 848
RsaNI	GTAC	2 cut(s)	376, 847
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	843
SaqAI	TTAA	3 cut(s)	492, 500, 821
SatI	GCNGC	3 cut(s)	570, 765, 786
Sau3AI	GATC	1 cut(s)	154
SchI	GAGTC	3 cut(s)	64, 171, 236
ScrFI	CCNGG	1 cut(s)	640
SduI	GDGCHC	3 cut(s)	8, 843, 909
SfaNI	GCATC	2 cut(s)	330, 868
SfcI	CTRYAG	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	842
SlaI	CTCGAG	1 cut(s)	842
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	2 cut(s)	842, 953
SmoI	CTYRAG	2 cut(s)	842, 953
Sse9I	AATT	4 cut(s)	116, 602, 671, 718
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	2 cut(s)	85, 100
SspMI	CTAG	3 cut(s)	398, 726, 741
SstI	GAGCTC	1 cut(s)	843
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	638
StyI	CCWWGG	1 cut(s)	882
TaqI	TCGA	3 cut(s)	594, 813, 843
TasI	AATT	4 cut(s)	116, 602, 671, 718
Tru1I	TTAA	3 cut(s)	492, 500, 821
Tru9I	TTAA	3 cut(s)	492, 500, 821
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	528, 660
TseI	GCWGC	3 cut(s)	569, 764, 785
Tsp45I	GTSAC	2 cut(s)	528, 660
TspDTI	ATGAA	3 cut(s)	747, 903, 935
TspRI	CASTG	1 cut(s)	76
XapI	RAATTY	2 cut(s)	116, 718
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	842
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	3 cut(s)	398, 726, 741
Zsp2I	ATGCAT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.