Rh6DG250800
BZIP Family

transcription factor PosF21

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005521
Physical Location & Seq
Reverse (-)
43882639 .. 43883217
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG250800.1

Sequence Viewer

Length: 306 bp
ATGGCTTCCAGGATTGAAGACATAAATGATCCAAAGCAAGCGAAAAGAATCAGCAACCGCATGTCAAAGAAGAGGTCAAATATGAAGACGCTATATTTGAAGAGACTTGAAGAAAAGGTAGTGAATCTGACATCTCAAGCAGCTATTCTATCTGCTCAAGTGACTTTCCTGCAGACAAACAAAAATGTACTCCAGTTTGAGATTATGTGCCTGAAACTACGTGCATGCCTCGCTAAGAAAGAGAATGAAGTTCAAGATGGTAAGCGATATTCTTTACTACAACTCTATAATATGGCCGGTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

101

Amino Acids

11.65

Weight (kDa)

9.96

Isoelectric Point (pI)

69.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 58
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 294
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 4 cut(s) 17, 100, 110, 254
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 140
ArsI GACNNNNNNTTYG 4 cut(s) 59, 79, 91, 111
BbsI GAAGAC 2 cut(s) 24, 92
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 1 cut(s) 304
BfmI CTRYAG 1 cut(s) 170
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 10
BpiI GAAGAC 2 cut(s) 24, 92
BpmI CTGGAG 1 cut(s) 176
BpuEI CTTGAG 2 cut(s) 120, 141
BsaAI YACGTR 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 152
BshFI GGCC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 97
BsnI GGCC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 58
BspANI GGCC 1 cut(s) 296
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 296
BssMI GATC 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 65, 95
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 39, 226
BstDEI CTNAG 1 cut(s) 234
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 2 cut(s) 64, 228
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 152
BstV2I GAAGAC 2 cut(s) 24, 92
BsuRI GGCC 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 39, 226
Cfr10I RCCGGY 1 cut(s) 296
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 61, 225
CviJI RGCY 3 cut(s) 5, 143, 296
CviKI_1 RGCY 3 cut(s) 5, 143, 296
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 65, 95
EarI CTCTTC 2 cut(s) 65, 95
EcoRII CCWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 64, 228
FaiI YATR 8 cut(s) 23, 62, 83, 94, 206, 226, 288, 293
FatI CATG 2 cut(s) 60, 224
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 304
GluI GCNGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 296
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 97
Hin1II CATG 2 cut(s) 64, 228
HinfI GANTC 2 cut(s) 48, 124
HpaII CCGG 1 cut(s) 297
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 172, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 2 cut(s) 64, 228
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 22, 182, 206, 224
Lsp1109I GCAGC 1 cut(s) 152
MaeI CTAG 1 cut(s) 304
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 160
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 5 cut(s) 29, 82, 97, 112, 122
MnlI CCTC 2 cut(s) 66, 239
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 64, 228
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 2 cut(s) 64, 228
PaeI GCATGC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 48, 124
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PstI CTGCAG 1 cut(s) 174
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 10
SetI ASST 4 cut(s) 77, 120, 145, 223
SfcI CTRYAG 1 cut(s) 170
SmlI CTYRAG 2 cut(s) 135, 156
SmoI CTYRAG 2 cut(s) 135, 156
SphI GCATGC 1 cut(s) 228
SsiI CCGC 1 cut(s) 58
SspMI CTAG 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 8
TaiI ACGT 1 cut(s) 223
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 2 cut(s) 48, 124
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 98, 261
XceI RCATGY 2 cut(s) 64, 228
XspI CTAG 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.