Rh6BG051200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005521
Physical Location & Seq
Reverse (-)
8242968 .. 8244602
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG051200.1

Sequence Viewer

Length: 270 bp
ATGTCATCGACGCATGTGGTGTCGTCCTCGAAATTGAGAGTGTACCTGGGAGAATTGTGGCTGACGCCGCCGTCCTTCTCATCTGAAAATGAGATTCCAGCACCGGTCCCTGATTCGATTTTGTTCGGCTTCTTTCCGGCCAAACCCAGCAGCATCGGCTTCATTCAGCTCAGGTGGAAACACTCTATGGAAATTAGGGTTTTAGGTTTTGGATTGGAGATCTTGTTTTCTGGAATCTGGGTCTTGCTGGGGAATTCAAGGTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.98

Weight (kDa)

8.23

Isoelectric Point (pI)

69.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
AciI CCGC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 253
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 1 cut(s) 44
AgeI ACCGGT 1 cut(s) 103
AgsI TTSAA 2 cut(s) 258, 266
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 253
AsiGI ACCGGT 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 47
BglII AGATCT 1 cut(s) 219
BisI GCNGC 2 cut(s) 68, 151
BlsI GCNGC 2 cut(s) 69, 152
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bse118I RCCGGY 1 cut(s) 103
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 162
BseYI CCCAGC 2 cut(s) 146, 247
BshFI GGCC 1 cut(s) 140
BshTI ACCGGT 1 cut(s) 103
BsiSI CCGG 2 cut(s) 104, 137
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 170
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 2 cut(s) 67, 156
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BsuRI GGCC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 106
CseI GACGC 2 cut(s) 19, 73
Csp6I GTAC 1 cut(s) 43
CspAI ACCGGT 1 cut(s) 103
CviAII CATG 1 cut(s) 14
CviJI RGCY 5 cut(s) 61, 129, 140, 159, 169
CviKI_1 RGCY 5 cut(s) 61, 129, 140, 159, 169
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 170
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 17
FaiI YATR 2 cut(s) 15, 188
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 68, 151
Fsp4HI GCNGC 2 cut(s) 68, 151
GluI GCNGC 2 cut(s) 68, 151
GsaI CCCAGC 2 cut(s) 150, 251
HaeIII GGCC 1 cut(s) 140
HapII CCGG 2 cut(s) 104, 137
HgaI GACGC 2 cut(s) 19, 73
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 1 cut(s) 17
HinfI GANTC 3 cut(s) 94, 113, 234
HpaII CCGG 2 cut(s) 104, 137
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 156
HpyF3I CTNAG 1 cut(s) 170
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 219
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 162
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MflI RGATCY 1 cut(s) 219
MluCI AATT 4 cut(s) 32, 53, 192, 253
MnlI CCTC 1 cut(s) 37
MspI CCGG 2 cut(s) 104, 137
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 67, 156
NdeII GATC 1 cut(s) 219
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 108
NspI RCATGY 1 cut(s) 17
PfeI GAWTC 3 cut(s) 94, 113, 234
PinAI ACCGGT 1 cut(s) 103
PkrI GCNGC 2 cut(s) 69, 152
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 2 cut(s) 146, 247
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 219
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SatI GCNGC 2 cut(s) 68, 151
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 47
SetI ASST 5 cut(s) 48, 171, 176, 208, 263
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 1 cut(s) 106
Sse9I AATT 4 cut(s) 32, 53, 192, 253
SsiI CCGC 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 45
TaqI TCGA 3 cut(s) 8, 29, 116
TasI AATT 4 cut(s) 32, 53, 192, 253
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 3 cut(s) 94, 113, 234
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 253
XceI RCATGY 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.