Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005521

Physical Location & Seq

Genomic Coordinates Forward (+)

49648217 .. 49649947

Gene Structure 1731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTAACAAGATGTGGTGTTGGTCGCCCTCTATTGTACGATTATCACAAAGTAGAGCTAGCTAACACGAATATGTTATTCTTTCGTCCAGAACAGGTTCAACATCTTATTGAGAAATGCTTACTCTTTCACATTAGTCTTGACCAATGCATAAAGGCCTTAACACATCTGCACACATTACACCACTCATCACACTTACAGAGAGAGGAATTTATCCTCGAAGATTTAAACATGAGATTGAAAGAGCTCGAGTACGATGTGCAAGTGCAAATCAAACTGAAAGATGCCTTGAATGAAGAAACCACAAAGGAGCACGAGTTACTGATGAAAGTTTTGAGTGGGACAGGGTTTGGACAGCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071566 GO:0071569 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ThiF

Protein Analysis

121

Amino Acids

14.24

Weight (kDa)

5.96

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	33 - 62	4.1e-06	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17290
malus_domestica	MD10G1146100.v1.1
prunus_persica	Prupe.8G184500_v2.0.a1
pyrus_communis	pycom05g14630
rosa_chinensis	RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011
rosa_laevigata	RLG00000012930 RLG00000022524
rosa_multiflora	Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790
rosa_rugosa	Rorug06G0143600
rosa_samantha	Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200
rosa_wichuraiana	Rw6G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	2 cut(s)	38, 254
AgsI	TTSAA	3 cut(s)	101, 241, 292
AluBI	AGCT	4 cut(s)	58, 62, 247, 358
AluI	AGCT	4 cut(s)	58, 62, 247, 358
Alw21I	GWGCWC	2 cut(s)	249, 315
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	96
AsuNHI	GCTAGC	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	249, 315
BfaI	CTAG	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	274
BmtI	GCTAGC	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
BsgI	GTGCAG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	158
BsiHKAI	GWGCWC	2 cut(s)	249, 315
BsiHKCI	CYCGRG	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	249, 315
BspANI	GGCC	1 cut(s)	158
BspOI	GCTAGC	1 cut(s)	62
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	37, 253
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	5 cut(s)	58, 62, 158, 247, 358
CviKI_1	RGCY	5 cut(s)	58, 62, 158, 247, 358
CviQI	GTAC	2 cut(s)	37, 253
DraI	TTTAAA	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	235
FaiI	YATR	3 cut(s)	74, 152, 233
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	235
Hpy188III	TCNNGA	2 cut(s)	89, 140
HpyCH4V	TGCA	4 cut(s)	150, 172, 262, 268
Hsp92II	CATG	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	3 cut(s)	80, 102, 330
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	318
MboII	GAAGA	2 cut(s)	233, 308
MhlI	GDGCHC	2 cut(s)	249, 315
MluCI	AATT	1 cut(s)	209
MnlI	CCTC	3 cut(s)	39, 199, 227
Mph1103I	ATGCAT	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	2 cut(s)	161, 227
MslI	CAYNNNNRTG	1 cut(s)	71
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	249
PspXI	VCTCGAGB	1 cut(s)	248
RsaI	GTAC	2 cut(s)	38, 254
RsaNI	GTAC	2 cut(s)	37, 253
RseI	CAYNNNNRTG	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	161, 227
SduI	GDGCHC	2 cut(s)	249, 315
SetI	ASST	5 cut(s)	60, 64, 99, 249, 360
SfaNI	GCATC	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	248, 359
SmoI	CTYRAG	2 cut(s)	248, 359
Sse9I	AATT	1 cut(s)	209
SseBI	AGGCCT	1 cut(s)	158
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	219, 249
TasI	AATT	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	161, 227
Tru9I	TTAA	2 cut(s)	161, 227
TspDTI	ATGAA	2 cut(s)	309, 341
XapI	RAATTY	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.