Rh5CG423800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005521
Physical Location & Seq
Reverse (-)
58580110 .. 58594686
14577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG423800.1

Sequence Viewer

Length: 411 bp
ATGGCTTTATGCTTTGTTCATTGTGTTGTTCAATTTTGGGCCTTTCGGCTATTTTGTTCAATTTATCACCTCGTGATCTCCGCCTCCGATTCCGGCGACCACGGGCACGGCGCCTTCCCCAATCTCGCTCGCTCTCTCAGCAAACCCTATCTCCCTCTACCAGGCTTCGTCGTCTCCGCGATGCTGAAGTTTTCGCAGACTACTGCGAACCAGATTCTATCAGTTCCTCCTACAAAGCCTCAACGATGCCAACTCGGACTCTGTTCACCGAAAGCTGACTCAGAAAGTCGTCCAGAATACGCCAGATCGTGGTCGACTTCTCCGGCGGGGTCAAACTCCAGGAGGCGAAGACCGATAGCTGCAACCGGAGAAGGATGTCATCGACGCATGTGGTGGCGTCCTCGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.21

Weight (kDa)

10.17

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 309
AccI GTMKAC 1 cut(s) 314
AccII CGCG 1 cut(s) 179
AciI CCGC 3 cut(s) 81, 177, 326
AcuI CTGAAG 1 cut(s) 206
AcyI GRCGYC 2 cut(s) 111, 397
AdeI CACNNNGTG 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 161, 309
AgsI TTSAA 2 cut(s) 32, 60
AjnI CCWGG 2 cut(s) 160, 338
AluBI AGCT 2 cut(s) 275, 359
AluI AGCT 2 cut(s) 275, 359
Alw26I GTCTC 1 cut(s) 178
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 359
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 59, 258
BaeGI GKGCMC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 110
BauI CACGAG 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 346
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 2 cut(s) 162, 340
BcoDI GTCTC 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 114
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 2 cut(s) 162, 340
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 162, 340
BmsI GCATC 2 cut(s) 171, 236
BpiI GAAGAC 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 322
BsaHI GRCGYC 2 cut(s) 111, 397
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 309
BseBI CCWGG 2 cut(s) 162, 340
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 2 cut(s) 161, 309
BseMII CTCAG 2 cut(s) 151, 294
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 3 cut(s) 93, 323, 366
BslI CCNNNNNNNGG 2 cut(s) 161, 309
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 75, 305
BspACI CCGC 3 cut(s) 81, 177, 326
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 2 cut(s) 150, 293
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 75, 305
BssNI GRCGYC 2 cut(s) 111, 397
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 2 cut(s) 162, 340
BstACI GRCGYC 2 cut(s) 111, 397
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 137, 280
BstDSI CCRYGG 1 cut(s) 100
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 380
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 78, 308
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 75, 305
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 2 cut(s) 162, 340
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 160, 338
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 100
BtgZI GCGATG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 380
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 2 cut(s) 386, 393
CviAII CATG 1 cut(s) 388
CviJI RGCY 7 cut(s) 5, 41, 49, 165, 238, 275, 359
CviKI_1 RGCY 7 cut(s) 5, 41, 49, 165, 238, 275, 359
DdeI CTNAG 2 cut(s) 137, 280
DinI GGCGCC 1 cut(s) 112
DpnI GATC 2 cut(s) 77, 307
DpnII GATC 2 cut(s) 75, 305
DraIII CACNNNGTG 1 cut(s) 73
EciI GGCGGA 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 206
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 160, 338
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 1 cut(s) 391
FaiI YATR 2 cut(s) 10, 389
FatI CATG 1 cut(s) 387
FauI CCCGC 1 cut(s) 319
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 360
GlaI GCGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 322
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 1 cut(s) 41
HapII CCGG 3 cut(s) 93, 323, 366
HgaI GACGC 2 cut(s) 386, 393
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 2 cut(s) 111, 397
Hin1II CATG 1 cut(s) 391
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 4 cut(s) 89, 214, 258, 278
HpaII CCGG 3 cut(s) 93, 323, 366
HphI GGTGA 2 cut(s) 59, 258
Hpy166II GTNNAC 2 cut(s) 266, 315
Hpy188I TCNGA 3 cut(s) 88, 257, 283
Hpy188III TCNNGA 2 cut(s) 73, 293
Hpy8I GTNNAC 2 cut(s) 266, 315
Hpy99I CGWCG 2 cut(s) 173, 387
HpyAV CCTTC 2 cut(s) 124, 365
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 137, 280
Hsp92I GRCGYC 2 cut(s) 111, 397
Hsp92II CATG 1 cut(s) 391
HspAI GCGC 1 cut(s) 111
KasI GGCGCC 1 cut(s) 110
Kzo9I GATC 2 cut(s) 75, 305
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 2 cut(s) 171, 236
MalI GATC 2 cut(s) 77, 307
MboI GATC 2 cut(s) 75, 305
MboII GAAGA 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 3 cut(s) 32, 60, 406
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 2 cut(s) 252, 272
MnlI CCTC 7 cut(s) 80, 94, 165, 237, 249, 336, 411
MspI CCGG 3 cut(s) 93, 323, 366
MspR9I CCNGG 2 cut(s) 162, 340
MvaI CCWGG 2 cut(s) 162, 340
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 138
NarI GGCGCC 1 cut(s) 111
NdeII GATC 2 cut(s) 75, 305
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 1 cut(s) 112
NspI RCATGY 1 cut(s) 391
PfeI GAWTC 2 cut(s) 89, 214
PflMI CCANNNNNTGG 1 cut(s) 309
PfoI TCCNGGA 1 cut(s) 338
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 2 cut(s) 252, 272
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 2 cut(s) 252, 272
Psp6I CCWGG 2 cut(s) 160, 338
PspGI CCWGG 2 cut(s) 160, 338
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 313
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 2 cut(s) 75, 305
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 2 cut(s) 252, 272
ScrFI CCNGG 2 cut(s) 162, 340
SduI GDGCHC 1 cut(s) 108
SetI ASST 3 cut(s) 72, 277, 361
SfaNI GCATC 2 cut(s) 171, 236
SfoI GGCGCC 1 cut(s) 112
Sse9I AATT 3 cut(s) 32, 60, 406
SsiI CCGC 3 cut(s) 81, 177, 326
SspDI GGCGCC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 160, 338
TaqI TCGA 3 cut(s) 314, 382, 403
TaqII GACCGA 1 cut(s) 367
TasI AATT 3 cut(s) 32, 60, 406
TfiI GAWTC 2 cut(s) 89, 214
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 8
Van91I CCANNNNNTGG 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 159
XceI RCATGY 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.