Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005521

Physical Location & Seq

Genomic Coordinates Reverse (-)

48034676 .. 48038046

Gene Structure 3371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG300100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGCTCAAAGATTGCCTTTTGCACAAGTCTCCATCCTTTATCTGGCAAGAAGAGTCAAATCAAAATCAGTGAGGGTGGAGTGCGGAGAGAGAGAGAGCGGAGTGCAGAGGAGAAATTTCCCCCGAACGCTCTCTCTGGAAGCTTCTTCTCCGATCAAGTTTTCACAGGTTTGGGACTCTTCTCGCTGATAGAGCTTTGTAGGAAGAAGATAGATAGACGGGGAGAGTCAGCCATTGCTTCAGCAACGATAGCACAATGTAGAGGAGGTTGCTCTCAGGGAGTAGGTGGCGTAGAAAATGTAGCGCCTGAGATGCTAACAAGATGTGGTGTTGGTCGCCCTCTATTGTACGATTATCACAAAGTAGAGCTAGCTAACACGAATATGTTATTCTTTCGTCCAGAACAGGTTCAACATCTTATGGAGAAATGCTTACCCTTTCACATTAGTCTTGACCAATGCATTAAGGCCTTAACATATCTGCACACATTACACCACTCGTCACACTTACAGATTGCTTATTGCTCAAAGATTGGGGAAGCTGCAGGAAAAAAGGGTGGAAACCTCGACGCACAATTATCTTATCCAGTTGGCATGTTGAAGAATACAGCCTGGTCTCACTCTCTCCCTCTGTCACTATTTCAATTTCCATGTTTCTCAGAAGTAGCAGATAGCAATATGGCTGAACAAAATTCTTCTAGGAATGAACTGGCTAGGGAACTCATCCCTCAATGTGCTGCTCAAATATCTGAACTGGCTGCTCCCAAGAGAGAGGAAGTTATCCTCGAAGATTTAAACATGAGATTGAAAGAGCTCGAGTACGATGTGCAAGTGCAAATCAAACTGAAAGATGCCTTGGATGAAGAAACCACAAAGGAGCACGAGTTACTGATGAAAGTTTTGAGTGGGACAGGGTTTGGACAGCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071566 GO:0071569 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ThiF

Protein Analysis

310

Amino Acids

34.37

Weight (kDa)

6.38

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17290
malus_domestica	MD10G1146100.v1.1
prunus_persica	Prupe.8G184500_v2.0.a1
pyrus_communis	pycom05g14630
rosa_chinensis	RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011
rosa_laevigata	RLG00000012930 RLG00000022524
rosa_multiflora	Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790
rosa_rugosa	Rorug06G0143600
rosa_samantha	Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200
rosa_wichuraiana	Rw6G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	100
AciI	CCGC	2 cut(s)	85, 100
AcsI	RAATTY	2 cut(s)	116, 691
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	350, 821
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	413, 601, 644, 808
AjnI	CCWGG	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	2 cut(s)	839, 871
AluBI	AGCT	7 cut(s)	144, 196, 370, 374, 542, 814, 925
AluI	AGCT	7 cut(s)	144, 196, 370, 374, 542, 814, 925
Alw21I	GWGCWC	2 cut(s)	816, 882
Alw26I	GTCTC	2 cut(s)	35, 621
Ama87I	CYCGRG	1 cut(s)	815
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	542, 737, 758
ApoI	RAATTY	2 cut(s)	116, 691
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	307
AsuNHI	GCTAGC	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	815
BanII	GRGCYC	2 cut(s)	8, 816
BauI	CACGAG	1 cut(s)	881
Bbv12I	GWGCWC	2 cut(s)	816, 882
BbvI	GCAGC	3 cut(s)	529, 724, 745
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	35, 621
BfaI	CTAG	3 cut(s)	371, 699, 714
BfmI	CTRYAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	308
BisI	GCNGC	3 cut(s)	543, 738, 759
BlsI	GCNGC	3 cut(s)	544, 739, 760
Bme1390I	CCNGG	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	815
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	2 cut(s)	303, 841
BmtI	GCTAGC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	855
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	3 cut(s)	587, 714, 759
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	1 cut(s)	855
BseGI	GGATG	3 cut(s)	34, 723, 865
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	3 cut(s)	290, 300, 672
BseNI	ACTGG	3 cut(s)	587, 714, 759
BseRI	GAGGAG	2 cut(s)	125, 279
BseXI	GCAGC	3 cut(s)	529, 724, 745
BsgI	GTGCAG	2 cut(s)	126, 467
BshFI	GGCC	1 cut(s)	470
BsiHKAI	GWGCWC	2 cut(s)	816, 882
BsiHKCI	CYCGRG	1 cut(s)	815
BslFI	GGGAC	2 cut(s)	189, 922
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	35, 621
BsmFI	GGGAC	2 cut(s)	189, 922
BsnI	GGCC	1 cut(s)	470
Bso31I	GGTCTC	1 cut(s)	621
BsoBI	CYCGRG	1 cut(s)	815
Bsp1286I	GDGCHC	3 cut(s)	8, 816, 882
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	2 cut(s)	85, 100
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	3 cut(s)	289, 301, 671
BspMAI	CTGCAG	1 cut(s)	547
BspOI	GCTAGC	1 cut(s)	374
BspTNI	GGTCTC	1 cut(s)	621
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	3 cut(s)	587, 714, 759
BssECI	CCNNGG	1 cut(s)	855
BssMI	GATC	1 cut(s)	154
BssSI	CACGAG	1 cut(s)	881
BssT1I	CCWWGG	1 cut(s)	855
Bst2BI	CACGAG	1 cut(s)	881
Bst2UI	CCWGG	1 cut(s)	613
Bst6I	CTCTTC	2 cut(s)	47, 185
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	276, 309, 658
BstF5I	GGATG	3 cut(s)	34, 723, 865
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	2 cut(s)	35, 621
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 251, 313
BstNI	CCWGG	1 cut(s)	613
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	611
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	3 cut(s)	529, 724, 745
BsuRI	GGCC	1 cut(s)	470
BtsCI	GGATG	3 cut(s)	34, 723, 865
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	307
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	2 cut(s)	349, 820
CviAII	CATG	3 cut(s)	595, 651, 799
CviQI	GTAC	2 cut(s)	349, 820
DdeI	CTNAG	3 cut(s)	276, 309, 658
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DraI	TTTAAA	1 cut(s)	795
Eam1104I	CTCTTC	2 cut(s)	47, 185
EarI	CTCTTC	2 cut(s)	47, 185
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	1 cut(s)	855
Eco147I	AGGCCT	1 cut(s)	470
Eco24I	GRGCYC	2 cut(s)	8, 816
Eco31I	GGTCTC	1 cut(s)	621
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	815
EcoICRI	GAGCTC	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	611
EcoT14I	CCWWGG	1 cut(s)	855
EcoT22I	ATGCAT	1 cut(s)	464
EcoT38I	GRGCYC	2 cut(s)	8, 816
ErhI	CCWWGG	1 cut(s)	855
FaeI	CATG	3 cut(s)	598, 654, 802
FaiI	YATR	7 cut(s)	386, 422, 478, 596, 652, 680, 800
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	2 cut(s)	189, 922
FatI	CATG	3 cut(s)	594, 650, 798
Fnu4HI	GCNGC	3 cut(s)	543, 738, 759
FokI	GGATG	3 cut(s)	21, 710, 872
FriOI	GRGCYC	2 cut(s)	8, 816
Fsp4HI	GCNGC	3 cut(s)	543, 738, 759
FspBI	CTAG	3 cut(s)	371, 699, 714
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	3 cut(s)	543, 738, 759
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	470
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	3 cut(s)	598, 654, 802
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	3 cut(s)	55, 177, 227
Hpy188I	TCNGA	3 cut(s)	154, 661, 751
Hpy188III	TCNNGA	3 cut(s)	138, 401, 452
Hpy99I	CGWCG	1 cut(s)	572
HpyCH4V	TGCA	7 cut(s)	24, 107, 462, 484, 545, 829, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 251, 313
HpyF3I	CTNAG	3 cut(s)	276, 309, 658
Hsp92II	CATG	3 cut(s)	598, 654, 802
HspAI	GCGC	1 cut(s)	305
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	766, 877
Lsp1109I	GCAGC	3 cut(s)	529, 724, 745
LweI	GCATC	2 cut(s)	303, 841
MaeI	CTAG	3 cut(s)	371, 699, 714
MaeIII	GTNAC	3 cut(s)	501, 633, 885
MalI	GATC	1 cut(s)	156
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	1 cut(s)	154
MboII	GAAGA	9 cut(s)	64, 139, 172, 217, 220, 613, 687, 800, 875
MhlI	GDGCHC	3 cut(s)	8, 816, 882
MluCI	AATT	4 cut(s)	116, 575, 644, 691
MlyI	GAGTC	3 cut(s)	64, 171, 236
Mph1103I	ATGCAT	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	3 cut(s)	465, 473, 794
MslI	CAYNNNNRTG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	613
MvaI	CCWGG	1 cut(s)	613
MwoI	GCNNNNNNNGC	3 cut(s)	193, 251, 313
NdeII	GATC	1 cut(s)	154
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	3 cut(s)	598, 654, 802
NmuCI	GTSAC	2 cut(s)	501, 633
NsiI	ATGCAT	1 cut(s)	464
NspI	RCATGY	1 cut(s)	598
PaeR7I	CTCGAG	1 cut(s)	815
PceI	AGGCCT	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	408
PkrI	GCNGC	3 cut(s)	544, 739, 760
PleI	GAGTC	3 cut(s)	63, 171, 235
PpsI	GAGTC	3 cut(s)	63, 171, 235
Psp124BI	GAGCTC	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	611
PspXI	VCTCGAGB	1 cut(s)	815
PstI	CTGCAG	1 cut(s)	547
RsaI	GTAC	2 cut(s)	350, 821
RsaNI	GTAC	2 cut(s)	349, 820
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	3 cut(s)	465, 473, 794
SatI	GCNGC	3 cut(s)	543, 738, 759
Sau3AI	GATC	1 cut(s)	154
SchI	GAGTC	3 cut(s)	64, 171, 236
ScrFI	CCNGG	1 cut(s)	613
SduI	GDGCHC	3 cut(s)	8, 816, 882
SfaNI	GCATC	2 cut(s)	303, 841
SfcI	CTRYAG	1 cut(s)	543
Sfr274I	CTCGAG	1 cut(s)	815
SlaI	CTCGAG	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	815, 926
SmoI	CTYRAG	2 cut(s)	815, 926
Sse9I	AATT	4 cut(s)	116, 575, 644, 691
SseBI	AGGCCT	1 cut(s)	470
SsiI	CCGC	2 cut(s)	85, 100
SspMI	CTAG	3 cut(s)	371, 699, 714
SstI	GAGCTC	1 cut(s)	816
StuI	AGGCCT	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	611
StyI	CCWWGG	1 cut(s)	855
TaqI	TCGA	3 cut(s)	567, 786, 816
TasI	AATT	4 cut(s)	116, 575, 644, 691
Tru1I	TTAA	3 cut(s)	465, 473, 794
Tru9I	TTAA	3 cut(s)	465, 473, 794
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	501, 633
TseI	GCWGC	3 cut(s)	542, 737, 758
Tsp45I	GTSAC	2 cut(s)	501, 633
TspDTI	ATGAA	3 cut(s)	720, 876, 908
TspRI	CASTG	1 cut(s)	76
XapI	RAATTY	2 cut(s)	116, 691
XceI	RCATGY	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	815
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	3 cut(s)	371, 699, 714
Zsp2I	ATGCAT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.