Rmu_ssc0000126.1_g000041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000126.1
OG0005521
Physical Location & Seq
Forward (+)
179549 .. 182467
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000126.1_g000041.1.cds

Sequence Viewer

Length: 936 bp
atgaagaagaagctatatttgaagagacttgaagaaaaggtagtgaatctgacaactcaagcagctattctatctgctcaagtgactttcctgcagatcccttcacaaacccacacgacgtcgttgcctctctctctccccttcaccgttgcagacctcagacctcacaagctcgccggaaaaacacctgatcgtcgacgttcgatcacagatcacgtcttgatctccgcctccgattccggagaccaccggcacggcgctctctctctttccttgatcacagatcacctcgtgatctccgcctccgattccggcgaccacgggcacagcgccttccccaatctcgctcgctctctcagcaaaccctatctccctctaccaggctttgtcgtctccgcgatgctgaagttttcgcaggctactgcgaaccagattctatcagttcctcctacaaagcctcaacgatgccaactcggactctgttcaccgaaagctgactcaggtagtacctctctccttctcgctttttcttcaattccggctctgtttgcttctgattctcatttcggagccctagaatcctctgttttgatcgtggtcgacttctccggcggggtcaaactccaggaggcgaaggccgatagctgcaaccggagaaggatgtcatcgacgcatgtggtggcatcctcgaaattgagtgtgtacctgggagaattgtggctgacgccgccgtccttctcatctgaaaatgagattccggcaccggtccctgattcgatttcgttcggcttctttccgtcgccggaggtcggccggagacccaccggagttagccggaggtcgaccggagactcgccggagttggccggaggtcgaccggagaccggccggagttggccggagaccttgccggagaggagagagaatgattgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

33.46

Weight (kDa)

9.08

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 730
AatII GACGTC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 760
AccI GTMKAC 4 cut(s) 196, 600, 842, 874
AccII CGCG 1 cut(s) 398
AccIII TCCGGA 1 cut(s) 239
AciI CCGC 5 cut(s) 228, 300, 396, 612, 728
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 4 cut(s) 811, 864, 886, 896
AcuI CTGAAG 1 cut(s) 425
AcyI GRCGYC 2 cut(s) 119, 725
AdeI CACNNNGTG 1 cut(s) 292
AfaI GTAC 2 cut(s) 508, 704
AfiI CCNNNNNNNGG 3 cut(s) 380, 809, 884
AgeI ACCGGT 1 cut(s) 763
AgsI TTSAA 3 cut(s) 22, 32, 534
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 3 cut(s) 379, 624, 705
AluBI AGCT 5 cut(s) 13, 65, 172, 494, 645
AluI AGCT 5 cut(s) 13, 65, 172, 494, 645
Alw26I GTCTC 7 cut(s) 19, 237, 397, 811, 843, 875, 896
AlwI GGATC 1 cut(s) 91
Aor13HI TCCGGA 1 cut(s) 239
AoxI GGCC 5 cut(s) 636, 811, 864, 886, 896
ApeKI GCWGC 2 cut(s) 62, 645
AsiGI ACCGGT 1 cut(s) 763
AspLEI GCGC 2 cut(s) 260, 332
AspS9I GGNCC 1 cut(s) 766
AsuHPI GGTGA 3 cut(s) 136, 278, 477
AvaII GGWCC 1 cut(s) 766
BaeGI GKGCMC 1 cut(s) 327
BanI GGYRCC 1 cut(s) 760
BanII GRGCYC 1 cut(s) 574
BauI CACGAG 1 cut(s) 290
BbvI GCAGC 2 cut(s) 74, 632
BceAI ACGGC 2 cut(s) 271, 715
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 3 cut(s) 381, 626, 707
BclI TGATCA 1 cut(s) 276
BcoDI GTCTC 7 cut(s) 19, 237, 397, 811, 843, 875, 896
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 92
BfoI RGCGCY 2 cut(s) 261, 333
BisI GCNGC 3 cut(s) 63, 646, 728
BlsI GCNGC 3 cut(s) 64, 647, 729
Bme1390I CCNGG 3 cut(s) 381, 626, 707
Bme18I GGWCC 1 cut(s) 766
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 766
BmiI GGNNCC 3 cut(s) 571, 762, 768
BmrFI CCNGG 3 cut(s) 381, 626, 707
BmsI GCATC 3 cut(s) 390, 455, 692
BpmI CTGGAG 1 cut(s) 608
BpuEI CTTGAG 2 cut(s) 42, 63
BsaHI GRCGYC 2 cut(s) 119, 725
BsaI GGTCTC 4 cut(s) 237, 811, 875, 896
BsaJI CCNNGG 2 cut(s) 319, 706
BsaWI WCCGGW 6 cut(s) 239, 651, 763, 824, 845, 877
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 3 cut(s) 380, 809, 884
Bse118I RCCGGY 3 cut(s) 249, 763, 884
BseAI TCCGGA 1 cut(s) 239
BseBI CCWGG 3 cut(s) 381, 626, 707
BseDI CCNNGG 2 cut(s) 319, 706
BseGI GGATG 2 cut(s) 666, 683
BseLI CCNNNNNNNGG 3 cut(s) 380, 809, 884
BseMII CTCAG 3 cut(s) 172, 370, 513
BseRI GAGGAG 1 cut(s) 931
BseSI GKGCMC 1 cut(s) 327
BseX3I CGGCCG 2 cut(s) 811, 886
BseXI GCAGC 2 cut(s) 74, 632
Bsh1236I CGCG 1 cut(s) 398
Bsh1285I CGRYCG 4 cut(s) 814, 846, 878, 889
BshFI GGCC 5 cut(s) 638, 813, 866, 888, 898
BshNI GGYRCC 1 cut(s) 760
BshTI ACCGGT 1 cut(s) 763
BsiEI CGRYCG 4 cut(s) 814, 846, 878, 889
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 3 cut(s) 380, 809, 884
BsmAI GTCTC 7 cut(s) 19, 237, 397, 811, 843, 875, 896
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 752
BsnI GGCC 5 cut(s) 638, 813, 866, 888, 898
Bso31I GGTCTC 4 cut(s) 237, 811, 875, 896
Bsp1286I GDGCHC 2 cut(s) 327, 574
Bsp13I TCCGGA 1 cut(s) 239
Bsp143I GATC 9 cut(s) 96, 190, 204, 211, 222, 276, 283, 294, 591
BspACI CCGC 5 cut(s) 228, 300, 396, 612, 728
BspANI GGCC 5 cut(s) 638, 813, 866, 888, 898
BspCNI CTCAG 3 cut(s) 171, 369, 512
BspEI TCCGGA 1 cut(s) 239
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 3 cut(s) 571, 762, 768
BspMAI CTGCAG 1 cut(s) 96
BspPI GGATC 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 760
BspTNI GGTCTC 4 cut(s) 237, 811, 875, 896
BsrFI RCCGGY 3 cut(s) 249, 763, 884
BssAI RCCGGY 3 cut(s) 249, 763, 884
BssECI CCNNGG 2 cut(s) 319, 706
BssMI GATC 9 cut(s) 96, 190, 204, 211, 222, 276, 283, 294, 591
BssNI GRCGYC 2 cut(s) 119, 725
BssSI CACGAG 1 cut(s) 290
Bst2BI CACGAG 1 cut(s) 290
Bst2UI CCWGG 3 cut(s) 381, 626, 707
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 2 cut(s) 119, 725
BstC8I GCNNGC 3 cut(s) 174, 349, 417
BstDEI CTNAG 3 cut(s) 158, 356, 499
BstDSI CCRYGG 1 cut(s) 319
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 666, 683
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 2 cut(s) 261, 333
BstHHI GCGC 2 cut(s) 260, 332
BstKTI GATC 9 cut(s) 99, 193, 207, 214, 225, 279, 286, 297, 594
BstMAI GTCTC 7 cut(s) 19, 237, 397, 811, 843, 875, 896
BstMBI GATC 9 cut(s) 96, 190, 204, 211, 222, 276, 283, 294, 591
BstMCI CGRYCG 4 cut(s) 814, 846, 878, 889
BstMWI GCNNNNNNNGC 3 cut(s) 357, 548, 727
BstNI CCWGG 3 cut(s) 381, 626, 707
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 3 cut(s) 379, 624, 705
BstSFI CTRYAG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 2 cut(s) 74, 632
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BstZI CGGCCG 2 cut(s) 811, 886
BsuRI GGCC 5 cut(s) 638, 813, 866, 888, 898
BtgI CCRYGG 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 413
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 666, 683
Cac8I GCNNGC 3 cut(s) 174, 349, 417
CfoI GCGC 2 cut(s) 260, 332
Cfr10I RCCGGY 3 cut(s) 249, 763, 884
Cfr13I GGNCC 1 cut(s) 766
CseI GACGC 2 cut(s) 679, 733
Csp6I GTAC 2 cut(s) 507, 703
CspAI ACCGGT 1 cut(s) 763
CviAII CATG 1 cut(s) 674
CviQI GTAC 2 cut(s) 507, 703
DdeI CTNAG 3 cut(s) 158, 356, 499
DpnI GATC 9 cut(s) 98, 192, 206, 213, 224, 278, 285, 296, 593
DpnII GATC 9 cut(s) 96, 190, 204, 211, 222, 276, 283, 294, 591
DraIII CACNNNGTG 1 cut(s) 292
DrdI GACNNNNNNGTC 1 cut(s) 730
DseDI GACNNNNNNGTC 1 cut(s) 730
EaeI YGGCCR 4 cut(s) 811, 864, 886, 896
EagI CGGCCG 2 cut(s) 811, 886
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
EciI GGCGGA 2 cut(s) 217, 289
EclXI CGGCCG 2 cut(s) 811, 886
Eco24I GRGCYC 1 cut(s) 574
Eco31I GGTCTC 4 cut(s) 237, 811, 875, 896
Eco47I GGWCC 1 cut(s) 766
Eco52I CGGCCG 2 cut(s) 811, 886
Eco57I CTGAAG 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoRII CCWGG 3 cut(s) 379, 624, 705
EcoT38I GRGCYC 1 cut(s) 574
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 1 cut(s) 677
FaiI YATR 2 cut(s) 16, 675
FaqI GGGAC 1 cut(s) 752
FatI CATG 1 cut(s) 673
FauI CCCGC 1 cut(s) 605
FbaI TGATCA 1 cut(s) 276
FblI GTMKAC 4 cut(s) 196, 600, 842, 874
Fnu4HI GCNGC 3 cut(s) 63, 646, 728
FokI GGATG 2 cut(s) 670, 673
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 3 cut(s) 63, 646, 728
FspBI CTAG 1 cut(s) 575
GlaI GCGC 2 cut(s) 259, 331
GluI GCNGC 3 cut(s) 63, 646, 728
GsuI CTGGAG 1 cut(s) 608
HaeII RGCGCY 2 cut(s) 261, 333
HaeIII GGCC 5 cut(s) 638, 813, 866, 888, 898
HgaI GACGC 2 cut(s) 679, 733
HhaI GCGC 2 cut(s) 260, 332
Hin1I GRCGYC 2 cut(s) 119, 725
Hin1II CATG 1 cut(s) 677
Hin6I GCGC 2 cut(s) 258, 330
HinP1I GCGC 2 cut(s) 258, 330
HincII GTYRAC 4 cut(s) 197, 601, 843, 875
HindII GTYRAC 4 cut(s) 197, 601, 843, 875
HphI GGTGA 3 cut(s) 136, 278, 477
Hpy166II GTNNAC 6 cut(s) 197, 485, 601, 703, 843, 875
Hpy188I TCNGA 8 cut(s) 51, 161, 235, 307, 476, 556, 569, 745
Hpy188III TCNNGA 3 cut(s) 220, 240, 292
Hpy8I GTNNAC 6 cut(s) 197, 485, 601, 703, 843, 875
Hpy99I CGWCG 6 cut(s) 121, 124, 198, 201, 673, 802
HpyAV CCTTC 7 cut(s) 111, 151, 343, 527, 628, 651, 745
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 3 cut(s) 119, 199, 216
HpyCH4V TGCA 3 cut(s) 94, 152, 648
HpyF10VI GCNNNNNNNGC 3 cut(s) 357, 548, 727
HpyF3I CTNAG 3 cut(s) 158, 356, 499
HpySE526I ACGT 3 cut(s) 119, 199, 216
Hsp92I GRCGYC 2 cut(s) 119, 725
Hsp92II CATG 1 cut(s) 677
HspAI GCGC 2 cut(s) 258, 330
Kpn2I TCCGGA 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 9 cut(s) 96, 190, 204, 211, 222, 276, 283, 294, 591
LmnI GCTCC 1 cut(s) 569
Lsp1109I GCAGC 2 cut(s) 74, 632
LweI GCATC 3 cut(s) 390, 455, 692
MaeI CTAG 1 cut(s) 575
MaeII ACGT 3 cut(s) 119, 199, 216
MaeIII GTNAC 1 cut(s) 82
MalI GATC 9 cut(s) 98, 192, 206, 213, 224, 278, 285, 296, 593
MboI GATC 9 cut(s) 96, 190, 204, 211, 222, 276, 283, 294, 591
MboII GAAGA 5 cut(s) 16, 19, 34, 44, 522
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 2 cut(s) 327, 574
MluCI AATT 3 cut(s) 534, 692, 713
MlyI GAGTC 3 cut(s) 471, 491, 845
MroI TCCGGA 1 cut(s) 239
MspR9I CCNGG 3 cut(s) 381, 626, 707
MvaI CCWGG 3 cut(s) 381, 626, 707
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 3 cut(s) 357, 548, 727
NdeII GATC 9 cut(s) 96, 190, 204, 211, 222, 276, 283, 294, 591
NlaIII CATG 1 cut(s) 677
NlaIV GGNNCC 3 cut(s) 571, 762, 768
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 677
PfeI GAWTC 8 cut(s) 46, 236, 308, 433, 557, 578, 754, 773
PfoI TCCNGGA 1 cut(s) 624
PinAI ACCGGT 1 cut(s) 763
PkrI GCNGC 3 cut(s) 64, 647, 729
PleI GAGTC 3 cut(s) 471, 491, 845
PpsI GAGTC 3 cut(s) 471, 491, 845
Psp6I CCWGG 3 cut(s) 379, 624, 705
PspGI CCWGG 3 cut(s) 379, 624, 705
PspN4I GGNNCC 3 cut(s) 571, 762, 768
PspPI GGNCC 1 cut(s) 766
PstI CTGCAG 1 cut(s) 96
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 2 cut(s) 508, 704
RsaNI GTAC 2 cut(s) 507, 703
SalI GTCGAC 4 cut(s) 195, 599, 841, 873
SatI GCNGC 3 cut(s) 63, 646, 728
Sau3AI GATC 9 cut(s) 96, 190, 204, 211, 222, 276, 283, 294, 591
Sau96I GGNCC 1 cut(s) 766
SchI GAGTC 3 cut(s) 471, 491, 845
ScrFI CCNGG 3 cut(s) 381, 626, 707
SduI GDGCHC 2 cut(s) 327, 574
SfaNI GCATC 3 cut(s) 390, 455, 692
SfcI CTRYAG 1 cut(s) 92
SgrDI CGTCGACG 1 cut(s) 195
SinI GGWCC 1 cut(s) 766
SmlI CTYRAG 2 cut(s) 57, 78
SmoI CTYRAG 2 cut(s) 57, 78
Sse9I AATT 3 cut(s) 534, 692, 713
SsiI CCGC 5 cut(s) 228, 300, 396, 612, 728
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 3 cut(s) 379, 624, 705
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 3 cut(s) 122, 202, 219
TaqI TCGA 8 cut(s) 196, 203, 600, 668, 689, 776, 842, 874
TasI AATT 3 cut(s) 534, 692, 713
TauI GCSGC 1 cut(s) 730
TfiI GAWTC 8 cut(s) 46, 236, 308, 433, 557, 578, 754, 773
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 62, 645
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 786
VpaK11BI GGWCC 1 cut(s) 766
XagI CCTNNNNNAGG 1 cut(s) 378
XceI RCATGY 1 cut(s) 677
XmiI GTMKAC 4 cut(s) 196, 600, 842, 874
XspI CTAG 1 cut(s) 575
ZraI GACGTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.