Rh6DG250600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005521
Physical Location & Seq
Reverse (-)
43846679 .. 43857498
10820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG250600.1

Sequence Viewer

Length: 318 bp
ATGCGGGCTGGCAGCAGGCGGGCTGGCAGCAGGCGGGCTGGCAGCAGGCAGGTGCGCAGCAGGAGGGCTGCAACAGCAGATAGCAATATGGCTGGCCAAAATTCTTCAAGGAATGAACTGGCTATGGAACTCACCTGGCTTAGACAGAGGAAAGAACGATTGCAAGCTCAATATGCTGCTCAAATTTCTAAACTAGCTGCTCTCGAGAGAGAGGAATATATCCTCAAAGATTTAAACATCAAATTAAAAGAACACGAGAACGATTTGCAAGTACAGATCAAACTGGAAGATGGTAAGGGATATTCTTTCCTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.03

Weight (kDa)

10.31

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc16I TGCGCA 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 40
AciI CCGC 3 cut(s) 4, 19, 34
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 2 cut(s) 100, 183
AfaI GTAC 1 cut(s) 273
AgsI TTSAA 1 cut(s) 108
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 2 cut(s) 167, 197
AluI AGCT 2 cut(s) 167, 197
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 7 cut(s) 12, 27, 42, 57, 68, 176, 197
ApoI RAATTY 2 cut(s) 100, 183
AspLEI GCGC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 203
BalI TGGCCA 1 cut(s) 96
BauI CACGAG 1 cut(s) 254
BbvI GCAGC 7 cut(s) 24, 39, 54, 55, 69, 163, 184
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 136
BfaI CTAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 7 cut(s) 13, 28, 43, 58, 69, 177, 198
BlsI GCNGC 7 cut(s) 14, 29, 44, 59, 70, 178, 199
Bme1390I CCNGG 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 136
Bse1I ACTGG 2 cut(s) 123, 288
BseBI CCWGG 1 cut(s) 136
BseNI ACTGG 2 cut(s) 123, 288
BseXI GCAGC 7 cut(s) 24, 39, 54, 55, 69, 163, 184
BshFI GGCC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 203
BsnI GGCC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 203
Bsp143I GATC 1 cut(s) 276
BspACI CCGC 3 cut(s) 4, 19, 34
BspANI GGCC 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 40
BsrI ACTGG 2 cut(s) 123, 288
BssMI GATC 1 cut(s) 276
BssSI CACGAG 1 cut(s) 254
Bst2BI CACGAG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 140
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 279
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 2 cut(s) 74, 173
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstV1I GCAGC 7 cut(s) 24, 39, 54, 55, 69, 163, 184
BsuRI GGCC 1 cut(s) 96
BveI ACCTGC 1 cut(s) 40
CfoI GCGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 272
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 140
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
DraI TTTAAA 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 134
FaiI YATR 4 cut(s) 89, 125, 174, 219
FauI CCCGC 2 cut(s) 12, 27
Fnu4HI GCNGC 7 cut(s) 13, 28, 43, 58, 69, 177, 198
Fsp4HI GCNGC 7 cut(s) 13, 28, 43, 58, 69, 177, 198
FspBI CTAG 1 cut(s) 194
FspI TGCGCA 1 cut(s) 56
GlaI GCGC 1 cut(s) 56
GluI GCNGC 7 cut(s) 13, 28, 43, 58, 69, 177, 198
HaeIII GGCC 1 cut(s) 96
HhaI GCGC 1 cut(s) 57
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HphI GGTGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 203, 205
HpyCH4V TGCA 3 cut(s) 71, 163, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 173
HpyF3I CTNAG 1 cut(s) 140
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 276
Lsp1109I GCAGC 7 cut(s) 24, 39, 54, 55, 69, 163, 184
MaeI CTAG 1 cut(s) 194
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 2 cut(s) 96, 299
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 3 cut(s) 100, 183, 242
MluNI TGGCCA 1 cut(s) 96
MnlI CCTC 4 cut(s) 57, 141, 205, 233
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
MseI TTAA 2 cut(s) 233, 245
Msp20I TGGCCA 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 2 cut(s) 74, 173
NdeII GATC 1 cut(s) 276
NsbI TGCGCA 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 203
PaqCI CACCTGC 1 cut(s) 40
PkrI GCNGC 7 cut(s) 14, 29, 44, 59, 70, 178, 199
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 2 cut(s) 233, 245
SatI GCNGC 7 cut(s) 13, 28, 43, 58, 69, 177, 198
Sau3AI GATC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 136
SetI ASST 4 cut(s) 54, 137, 169, 199
Sfr274I CTCGAG 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 3 cut(s) 100, 183, 242
SsiI CCGC 3 cut(s) 4, 19, 34
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 134
TaqI TCGA 1 cut(s) 204
TasI AATT 3 cut(s) 100, 183, 242
TatI WGTACW 1 cut(s) 271
Tru1I TTAA 2 cut(s) 233, 245
Tru9I TTAA 2 cut(s) 233, 245
TseI GCWGC 7 cut(s) 12, 27, 42, 57, 68, 176, 197
TspDTI ATGAA 1 cut(s) 129
XapI RAATTY 2 cut(s) 100, 183
XhoI CTCGAG 1 cut(s) 203
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.