Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005521

Physical Location & Seq

Genomic Coordinates Reverse (-)

2761378 .. 2762404

Gene Structure 1027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022524

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCAAGCCAGTTCCAACGCCGGTCCACCACAGAATTTGGGAGAACCGGTTGGGTCTTTCATCACTCCAAAACTGGTCTCGGCCTTCCCCTCGCTGTGAGAAAGCAACAGATCCGGGCCTCCTCCATTCCAGATTGTTCTCCGTCGGTGACCTCCAACTCCGGTTATCCTCATCTTCCTCTTGAACGTCGTCCAGAATATGCCTGCTTGTGGTCGACTTCTCCTGCGGGTTTAGAATCCAAGAGGCGAAGGCCGGCAGCCTCAACGGAGGAGGATGTCGACGGCGCGGGTGGAGTCGTCCTCCAAATTAAGCTTGTAGCTAATGCCGCCGTCCTCCGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.47

Weight (kDa)

10.02

Isoelectric Point (pI)

88.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17290
malus_domestica	MD10G1146100.v1.1
prunus_persica	Prupe.8G184500_v2.0.a1
pyrus_communis	pycom05g14630
rosa_chinensis	RchiOBHm_Chr4g0427301 RchiOBHm_Chr6g0288011
rosa_laevigata	RLG00000012930 RLG00000022524
rosa_multiflora	Rmu_sc0000951.1_g000010 Rmu_sc0009000.1_g000002 Rmu_ssc0000126.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096360 Rroxscaffold_6G00389110 Rroxscaffold_7G00186780 Rroxscaffold_7G00186790
rosa_rugosa	Rorug06G0143600
rosa_samantha	Rh5CG423800 Rh6AG256600 Rh6AG303600 Rh6BG051200 Rh6BG259300 Rh6BG259600 Rh6CG258700 Rh6CG300100 Rh6CG317200 Rh6DG250600 Rh6DG250800 Rh6DG302200
rosa_wichuraiana	Rw6G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	215, 279
AccII	CGCG	1 cut(s)	287
AciI	CCGC	3 cut(s)	227, 287, 327
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	2 cut(s)	313, 320
AluI	AGCT	2 cut(s)	313, 320
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	106
AoxI	GGCC	3 cut(s)	82, 117, 251
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	24, 117
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	269
BceAI	ACGGC	2 cut(s)	298, 314
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	258, 327
BlsI	GCNGC	2 cut(s)	259, 328
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 117
BmrFI	CCNGG	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
BpuMI	CCSGG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	83
BsaWI	WCCGGW	2 cut(s)	47, 161
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	3 cut(s)	21, 47, 253
Bse1I	ACTGG	2 cut(s)	10, 79
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	10, 79
BseRI	GAGGAG	2 cut(s)	112, 284
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	3 cut(s)	84, 119, 253
BshTI	ACCGGT	1 cut(s)	47
BsiSI	CCGG	5 cut(s)	22, 48, 115, 162, 254
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	84, 119, 253
Bso31I	GGTCTC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	227, 287, 327
BspANI	GGCC	3 cut(s)	84, 119, 253
BspFNI	CGCG	1 cut(s)	287
BspPI	GGATC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	83
BsrFI	RCCGGY	3 cut(s)	21, 47, 253
BsrI	ACTGG	2 cut(s)	10, 79
BssAI	RCCGGY	3 cut(s)	21, 47, 253
BssMI	GATC	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	205, 255
BstEII	GGTNACC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstPI	GGTNACC	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	84, 119, 253
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	205, 255
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	3 cut(s)	21, 47, 253
Cfr13I	GGNCC	2 cut(s)	24, 117
CspAI	ACCGGT	1 cut(s)	47
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviJI	RGCY	7 cut(s)	9, 84, 119, 253, 260, 313, 320
CviKI_1	RGCY	7 cut(s)	9, 84, 119, 253, 260, 313, 320
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	148
EcoO65I	GGTNACC	1 cut(s)	148
FaiI	YATR	1 cut(s)	201
FauI	CCCGC	2 cut(s)	220, 280
FblI	GTMKAC	2 cut(s)	215, 279
Fnu4HI	GCNGC	2 cut(s)	258, 327
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	258, 327
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	2 cut(s)	258, 327
HaeIII	GGCC	3 cut(s)	84, 119, 253
HapII	CCGG	5 cut(s)	22, 48, 115, 162, 254
HhaI	GCGC	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	2 cut(s)	216, 280
HindII	GTYRAC	2 cut(s)	216, 280
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	3 cut(s)	236, 294, 339
HpaII	CCGG	5 cut(s)	22, 48, 115, 162, 254
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	3 cut(s)	27, 216, 280
Hpy188I	TCNGA	2 cut(s)	338, 344
Hpy188III	TCNNGA	3 cut(s)	131, 182, 194
Hpy8I	GTNNAC	3 cut(s)	27, 216, 280
Hpy99I	CGWCG	3 cut(s)	148, 192, 284
HpyAV	CCTTC	2 cut(s)	95, 243
HpyCH4IV	ACGT	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	187
HspAI	GCGC	1 cut(s)	285
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	269
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	111
MluCI	AATT	2 cut(s)	35, 306
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	2 cut(s)	40, 180
MroNI	GCCGGC	1 cut(s)	253
MseI	TTAA	1 cut(s)	309
MspI	CCGG	5 cut(s)	22, 48, 115, 162, 254
MspR9I	CCNGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	326
NaeI	GCCGGC	1 cut(s)	255
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	1 cut(s)	111
NgoMIV	GCCGGC	1 cut(s)	253
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	236, 339
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	259, 328
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PspEI	GGTNACC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	24, 117
PsuI	RGATCY	1 cut(s)	111
SalI	GTCGAC	2 cut(s)	214, 278
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	258, 327
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	2 cut(s)	24, 117
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	4 cut(s)	155, 190, 315, 322
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	2 cut(s)	35, 306
SsiI	CCGC	3 cut(s)	227, 287, 327
StyD4I	CCNGG	1 cut(s)	114
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	215, 279
TasI	AATT	2 cut(s)	35, 306
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	236, 339
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	50
TspGWI	ACGGA	2 cut(s)	132, 281
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	35
XmiI	GTMKAC	2 cut(s)	215, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.