Rmu_sc0009000.1_g000002

Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009000.1
Physical Location & Seq
Reverse (-)
6050 .. 9456
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009000.1_g000002.1.cds

Sequence Viewer

Length: 1884 bp
atgcttcaattttttccccgcttgaccaatttgcccttccaccttcacctcagacctcacaagctcgccggaaaaacacctgatcgtcgacgttcgatcacagatcacgtcttgatctccgcctccgattccggagaccaccggcacggcgctctctctctttccttgatcacagatcacctcgtgatctccgcctccgattccggcgaccacgggcacagcgccttccccaatctcgctcgctctctcagcaaaccctatctccctctaccaggctttgtcgtctccgcgatgctgaagttttcgcaggctactgcgaaccagattctatcagttcctcctacaaagcctcaacgatgccaactcggactctgttcaccgaaagctgactcaggtagtacctctctccttctcgctttttcttcaattccggctctgtttgcttctgattctcatttcggagccctagaatcctctgttttgatcgtggtcgacttctccggcggggtcaaactccaggaggcgaaggccgatagctgcaaccggagaaggatgtcatcgacgcatgtggtggcatcctcgaaattgagtgtgtacctgggagaattgtggctgacgccgccgtccttctcatctgaaaatgagattccggcaccggtccctgattcgatttcgttcggcttctttccgtcgccggaggtcggccggagacccaccggagttagccggaggtcgaccggagactcgccggagttggccggaggtcgaccggagaccggccggagtatttcatgcaatgctgctggaagtgtcaacaggataaaccttactaattctagtatacaaggtacgctacatgaattctcattcttgtcattccctaatcttatgtatctaaacctcagctcaaataaactctttgatgtcataccacctggaattagttccctctccaaactcatttatcttgatctatctgtaaatcaattttctggagaaatcccgccagaaataggtcttctaagaagtctcacatttctctatctcgatagaaataatatttccggcactactcctatggagataggaaacttgaaatcattggtggatctgcagttgagcaccaatcatctcagtggtttaattccaacaacgttgggttttttgaccaaccttaccactctctatctccattcaaataatctttctggcactattcctatggagataggaaacttgaaatcattggtgggtctagacttgagcaccaatcaacttagtagttcaattccaacaacattatgtaatttgaccaaccttaccactctctatccccattcaaataatctttccggcactattcttatagagataggaaaccttaaatcattgatggatctagagttgagcaacaatcaactcagtggtttaatttcgacaacattgggtgatctgaccatccttgccactctctatctccattcaaataatctttctggcactatttctatggagataggaaatctgaaatcattgttggatctaaggttgagcaccaatcaactcagtggtctaattccgacaacactggagaatctgaccaatcttaccattctctctctcttctccaataatctttctggaactattcccacggggataggaaataaccagaaaggggcttttaagggagaaggggaaaggcatgtgcatctacaggagatcggtttggaagacttgagaagtcttctgggtcatccttcatctctacaaaatatcattgaagaaaccataaatgtgcaaacagagcttagttggtgtcgtcgtctgaaatcacaacaccctctctgcgagaacctagtttcaggagagcgtcttctgtga

Protein Analysis

627

Amino Acids

67.63

Weight (kDa)

6.58

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 622
AccB1I GGYRCC 1 cut(s) 652
AccI GTMKAC 5 cut(s) 88, 492, 734, 766, 841
AccII CGCG 1 cut(s) 290
AccIII TCCGGA 1 cut(s) 131
AciI CCGC 7 cut(s) 19, 120, 192, 288, 504, 620, 1004
AclI AACGTT 1 cut(s) 1154
AclWI GGATC 3 cut(s) 1116, 1404, 1548
AcoI YGGCCR 3 cut(s) 703, 756, 778
AcsI RAATTY 1 cut(s) 860
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 617
AdeI CACNNNGTG 1 cut(s) 184
AfaI GTAC 3 cut(s) 400, 596, 850
AfiI CCNNNNNNNGG 5 cut(s) 272, 701, 776, 1013, 1678
AgeI ACCGGT 1 cut(s) 655
AgsI TTSAA 9 cut(s) 8, 426, 1096, 1197, 1240, 1287, 1341, 1485, 1784
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 4 cut(s) 271, 516, 597, 934
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 1520, 1552
AluBI AGCT 5 cut(s) 64, 386, 537, 906, 1810
AluI AGCT 5 cut(s) 64, 386, 537, 906, 1810
Alw21I GWGCWC 3 cut(s) 1124, 1268, 1556
Alw26I GTCTC 6 cut(s) 129, 289, 703, 735, 767, 1034
AlwI GGATC 3 cut(s) 1116, 1404, 1548
Aor13HI TCCGGA 1 cut(s) 131
AoxI GGCC 4 cut(s) 528, 703, 756, 778
ApeKI GCWGC 2 cut(s) 537, 800
ApoI RAATTY 1 cut(s) 860
AsiGI ACCGGT 1 cut(s) 655
Asp700I GAANNNNTTC 1 cut(s) 943
AspLEI GCGC 2 cut(s) 152, 224
AspS9I GGNCC 1 cut(s) 658
AsuHPI GGTGA 4 cut(s) 38, 170, 369, 1460
AvaII GGWCC 1 cut(s) 658
BaeGI GKGCMC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 466
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 4 cut(s) 1010, 1739, 1740, 1868
Bbv12I GWGCWC 3 cut(s) 1124, 1268, 1556
BbvCI CCTCAGC 1 cut(s) 902
BbvI GCAGC 2 cut(s) 524, 787
BccI CCATC 2 cut(s) 1387, 1466
BceAI ACGGC 2 cut(s) 163, 607
BciT130I CCWGG 4 cut(s) 273, 518, 599, 936
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 6 cut(s) 129, 289, 703, 735, 767, 1034
BfaI CTAG 5 cut(s) 467, 837, 1256, 1400, 1859
BfmI CTRYAG 2 cut(s) 1112, 1715
BfoI RGCGCY 2 cut(s) 153, 225
BisI GCNGC 3 cut(s) 538, 620, 801
BlsI GCNGC 3 cut(s) 539, 621, 802
Bme1390I CCNGG 4 cut(s) 273, 518, 599, 936
Bme18I GGWCC 1 cut(s) 658
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 3 cut(s) 463, 654, 660
BmrFI CCNGG 4 cut(s) 273, 518, 599, 936
BmsI GCATC 4 cut(s) 282, 347, 584, 1720
BpiI GAAGAC 4 cut(s) 1010, 1739, 1740, 1868
BpmI CTGGAG 3 cut(s) 500, 1014, 1610
Bpu10I CCTNAGC 1 cut(s) 902
BpuEI CTTGAG 2 cut(s) 1282, 1759
BsaHI GRCGYC 1 cut(s) 617
BsaI GGTCTC 3 cut(s) 129, 703, 767
BsaJI CCNNGG 3 cut(s) 211, 598, 1653
BsaWI WCCGGW 6 cut(s) 131, 543, 655, 716, 737, 769
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 701, 776, 1013, 1678
Bse118I RCCGGY 3 cut(s) 141, 655, 776
Bse1I ACTGG 1 cut(s) 1593
Bse3DI GCAATG 1 cut(s) 802
BseAI TCCGGA 1 cut(s) 131
BseBI CCWGG 4 cut(s) 273, 518, 599, 936
BseDI CCNNGG 3 cut(s) 211, 598, 1653
BseGI GGATG 4 cut(s) 558, 575, 1458, 1756
BseLI CCNNNNNNNGG 5 cut(s) 272, 701, 776, 1013, 1678
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 7 cut(s) 64, 262, 405, 916, 1147, 1435, 1579
BseNI ACTGG 1 cut(s) 1593
BseSI GKGCMC 1 cut(s) 219
BseX3I CGGCCG 2 cut(s) 703, 778
BseXI GCAGC 2 cut(s) 524, 787
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 4 cut(s) 706, 738, 770, 781
BshFI GGCC 4 cut(s) 530, 705, 758, 780
BshNI GGYRCC 1 cut(s) 652
BshTI ACCGGT 1 cut(s) 655
BsiEI CGRYCG 4 cut(s) 706, 738, 770, 781
BsiHKAI GWGCWC 3 cut(s) 1124, 1268, 1556
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 5 cut(s) 272, 701, 776, 1013, 1678
BsmAI GTCTC 6 cut(s) 129, 289, 703, 735, 767, 1034
BsmBI CGTCTC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 4 cut(s) 530, 705, 758, 780
Bso31I GGTCTC 3 cut(s) 129, 703, 767
Bsp1286I GDGCHC 5 cut(s) 219, 466, 1124, 1268, 1556
Bsp13I TCCGGA 1 cut(s) 131
BspACI CCGC 7 cut(s) 19, 120, 192, 288, 504, 620, 1004
BspANI GGCC 4 cut(s) 530, 705, 758, 780
BspCNI CTCAG 7 cut(s) 63, 261, 404, 915, 1146, 1434, 1578
BspEI TCCGGA 1 cut(s) 131
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 3 cut(s) 463, 654, 660
BspMAI CTGCAG 1 cut(s) 1116
BspPI GGATC 3 cut(s) 1116, 1404, 1548
BspT107I GGYRCC 1 cut(s) 652
BspTNI GGTCTC 3 cut(s) 129, 703, 767
BsrDI GCAATG 1 cut(s) 802
BsrFI RCCGGY 3 cut(s) 141, 655, 776
BsrI ACTGG 1 cut(s) 1593
BssAI RCCGGY 3 cut(s) 141, 655, 776
BssECI CCNNGG 3 cut(s) 211, 598, 1653
BssNAI GTATAC 1 cut(s) 842
BssNI GRCGYC 1 cut(s) 617
BssSI CACGAG 1 cut(s) 182
Bst1107I GTATAC 1 cut(s) 842
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 4 cut(s) 273, 518, 599, 936
Bst6I CTCTTC 1 cut(s) 1628
BstACI GRCGYC 1 cut(s) 617
BstC8I GCNNGC 3 cut(s) 66, 241, 309
BstDSI CCRYGG 2 cut(s) 211, 1653
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 4 cut(s) 558, 575, 1458, 1756
BstFNI CGCG 1 cut(s) 290
BstH2I RGCGCY 2 cut(s) 153, 225
BstHHI GCGC 2 cut(s) 152, 224
BstMAI GTCTC 6 cut(s) 129, 289, 703, 735, 767, 1034
BstMCI CGRYCG 4 cut(s) 706, 738, 770, 781
BstMWI GCNNNNNNNGC 4 cut(s) 249, 440, 619, 1807
BstNI CCWGG 4 cut(s) 273, 518, 599, 936
BstNSI RCATGY 2 cut(s) 569, 1709
BstSCI CCNGG 4 cut(s) 271, 516, 597, 934
BstSFI CTRYAG 2 cut(s) 1112, 1715
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 524, 787
BstV2I GAAGAC 4 cut(s) 1010, 1739, 1740, 1868
BstX2I RGATCY 3 cut(s) 1108, 1396, 1540
BstYI RGATCY 3 cut(s) 1108, 1396, 1540
BstZ17I GTATAC 1 cut(s) 842
BstZI CGGCCG 2 cut(s) 703, 778
BsuRI GGCC 4 cut(s) 530, 705, 758, 780
BtgI CCRYGG 2 cut(s) 211, 1653
BtgZI GCGATG 1 cut(s) 305
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 4 cut(s) 558, 575, 1458, 1756
BtsIMutI CAGTG 4 cut(s) 1141, 1429, 1573, 1586
Cac8I GCNNGC 3 cut(s) 66, 241, 309
CfoI GCGC 2 cut(s) 152, 224
Cfr10I RCCGGY 3 cut(s) 141, 655, 776
Cfr13I GGNCC 1 cut(s) 658
CseI GACGC 3 cut(s) 571, 625, 1862
Csp6I GTAC 3 cut(s) 399, 595, 849
CspAI ACCGGT 1 cut(s) 655
CviAII CATG 4 cut(s) 566, 792, 857, 1706
CviQI GTAC 3 cut(s) 399, 595, 849
DraIII CACNNNGTG 1 cut(s) 184
DrdI GACNNNNNNGTC 1 cut(s) 622
DseDI GACNNNNNNGTC 1 cut(s) 622
EaeI YGGCCR 3 cut(s) 703, 756, 778
EagI CGGCCG 2 cut(s) 703, 778
Eam1104I CTCTTC 1 cut(s) 1628
EarI CTCTTC 1 cut(s) 1628
EciI GGCGGA 2 cut(s) 109, 181
EclXI CGGCCG 2 cut(s) 703, 778
Eco24I GRGCYC 1 cut(s) 466
Eco31I GGTCTC 3 cut(s) 129, 703, 767
Eco47I GGWCC 1 cut(s) 658
Eco52I CGGCCG 2 cut(s) 703, 778
Eco57I CTGAAG 1 cut(s) 317
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 860
EcoRII CCWGG 4 cut(s) 271, 516, 597, 934
EcoT38I GRGCYC 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 289
FaeI CATG 4 cut(s) 569, 795, 860, 1709
FaqI GGGAC 1 cut(s) 644
FatI CATG 4 cut(s) 565, 791, 856, 1705
FauI CCCGC 3 cut(s) 26, 497, 1011
FbaI TGATCA 1 cut(s) 168
FblI GTMKAC 5 cut(s) 88, 492, 734, 766, 841
Fnu4HI GCNGC 3 cut(s) 538, 620, 801
FokI GGATG 4 cut(s) 562, 565, 1445, 1743
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 3 cut(s) 538, 620, 801
FspBI CTAG 5 cut(s) 467, 837, 1256, 1400, 1859
GlaI GCGC 2 cut(s) 151, 223
GluI GCNGC 3 cut(s) 538, 620, 801
GsuI CTGGAG 3 cut(s) 500, 1014, 1610
HaeII RGCGCY 2 cut(s) 153, 225
HaeIII GGCC 4 cut(s) 530, 705, 758, 780
HgaI GACGC 3 cut(s) 571, 625, 1862
HhaI GCGC 2 cut(s) 152, 224
Hin1I GRCGYC 1 cut(s) 617
Hin1II CATG 4 cut(s) 569, 795, 860, 1709
Hin6I GCGC 2 cut(s) 150, 222
HinP1I GCGC 2 cut(s) 150, 222
HincII GTYRAC 5 cut(s) 89, 493, 735, 767, 814
HindII GTYRAC 5 cut(s) 89, 493, 735, 767, 814
HphI GGTGA 4 cut(s) 38, 170, 369, 1460
Hpy166II GTNNAC 8 cut(s) 89, 377, 493, 595, 735, 767, 814, 842
Hpy8I GTNNAC 8 cut(s) 89, 377, 493, 595, 735, 767, 814, 842
Hpy99I CGWCG 5 cut(s) 90, 93, 565, 694, 1827
HpyAV CCTTC 9 cut(s) 46, 53, 235, 419, 520, 543, 637, 1688, 1770
HpyCH4IV ACGT 3 cut(s) 91, 108, 1154
HpyCH4V TGCA 5 cut(s) 540, 795, 1114, 1711, 1801
HpyF10VI GCNNNNNNNGC 4 cut(s) 249, 440, 619, 1807
HpySE526I ACGT 3 cut(s) 91, 108, 1154
Hsp92I GRCGYC 1 cut(s) 617
Hsp92II CATG 4 cut(s) 569, 795, 860, 1709
HspAI GCGC 2 cut(s) 150, 222
Kpn2I TCCGGA 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 168
LmnI GCTCC 1 cut(s) 461
Lsp1109I GCAGC 2 cut(s) 524, 787
LweI GCATC 4 cut(s) 282, 347, 584, 1720
MaeI CTAG 5 cut(s) 467, 837, 1256, 1400, 1859
MaeII ACGT 3 cut(s) 91, 108, 1154
MboII GAAGA 7 cut(s) 414, 1010, 1615, 1739, 1745, 1796, 1868
MflI RGATCY 3 cut(s) 1108, 1396, 1540
MhlI GDGCHC 5 cut(s) 219, 466, 1124, 1268, 1556
MlyI GAGTC 3 cut(s) 363, 383, 737
MmeI TCCRAC 4 cut(s) 1172, 1316, 1518, 1604
MroI TCCGGA 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 943
MseI TTAA 4 cut(s) 1142, 1383, 1430, 1686
MslI CAYNNNNRTG 2 cut(s) 1134, 1796
MspR9I CCNGG 4 cut(s) 273, 518, 599, 936
MvaI CCWGG 4 cut(s) 273, 518, 599, 936
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 4 cut(s) 249, 440, 619, 1807
NlaIII CATG 4 cut(s) 569, 795, 860, 1709
NlaIV GGNNCC 3 cut(s) 463, 654, 660
NspI RCATGY 2 cut(s) 569, 1709
PdmI GAANNNNTTC 1 cut(s) 943
PfeI GAWTC 8 cut(s) 128, 200, 325, 449, 470, 646, 665, 1594
PfoI TCCNGGA 1 cut(s) 516
PinAI ACCGGT 1 cut(s) 655
PkrI GCNGC 3 cut(s) 539, 621, 802
PleI GAGTC 3 cut(s) 363, 383, 737
PpsI GAGTC 3 cut(s) 363, 383, 737
Psp1406I AACGTT 1 cut(s) 1154
Psp6I CCWGG 4 cut(s) 271, 516, 597, 934
PspGI CCWGG 4 cut(s) 271, 516, 597, 934
PspN4I GGNNCC 3 cut(s) 463, 654, 660
PspPI GGNCC 1 cut(s) 658
PstI CTGCAG 1 cut(s) 1116
PsuI RGATCY 3 cut(s) 1108, 1396, 1540
RsaI GTAC 3 cut(s) 400, 596, 850
RsaNI GTAC 3 cut(s) 399, 595, 849
RseI CAYNNNNRTG 2 cut(s) 1134, 1796
SalI GTCGAC 4 cut(s) 87, 491, 733, 765
SaqAI TTAA 4 cut(s) 1142, 1383, 1430, 1686
SatI GCNGC 3 cut(s) 538, 620, 801
Sau96I GGNCC 1 cut(s) 658
SchI GAGTC 3 cut(s) 363, 383, 737
ScrFI CCNGG 4 cut(s) 273, 518, 599, 936
SduI GDGCHC 5 cut(s) 219, 466, 1124, 1268, 1556
SfaNI GCATC 4 cut(s) 282, 347, 584, 1720
SfcI CTRYAG 2 cut(s) 1112, 1715
SgrDI CGTCGACG 1 cut(s) 87
SinI GGWCC 1 cut(s) 658
SmiMI CAYNNNNRTG 2 cut(s) 1134, 1796
SmlI CTYRAG 2 cut(s) 1261, 1738
SmoI CTYRAG 2 cut(s) 1261, 1738
SsiI CCGC 7 cut(s) 19, 120, 192, 288, 504, 620, 1004
SspI AATATT 1 cut(s) 1060
SspMI CTAG 5 cut(s) 467, 837, 1256, 1400, 1859
StyD4I CCNGG 4 cut(s) 271, 516, 597, 934
TaiI ACGT 3 cut(s) 94, 111, 1157
TauI GCSGC 1 cut(s) 622
TfiI GAWTC 8 cut(s) 128, 200, 325, 449, 470, 646, 665, 1594
Tru1I TTAA 4 cut(s) 1142, 1383, 1430, 1686
Tru9I TTAA 4 cut(s) 1142, 1383, 1430, 1686
TscAI CASTG 4 cut(s) 1141, 1429, 1573, 1593
TseI GCWGC 2 cut(s) 537, 800
TspDTI ATGAA 3 cut(s) 780, 873, 1752
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 4 cut(s) 1141, 1429, 1573, 1593
VpaK11BI GGWCC 1 cut(s) 658
XagI CCTNNNNNAGG 1 cut(s) 270
XapI RAATTY 1 cut(s) 860
XbaI TCTAGA 2 cut(s) 1255, 1399
XceI RCATGY 2 cut(s) 569, 1709
XmiI GTMKAC 5 cut(s) 88, 492, 734, 766, 841
XmnI GAANNNNTTC 1 cut(s) 943
XspI CTAG 5 cut(s) 467, 837, 1256, 1400, 1859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.