MD11G1069300.v1.1

ion channel POLLUX-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
5955746 .. 5961059
5314 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1069300.v1.1.491

Sequence Viewer

Length: 1521 bp
ATGACTTTTCGGGGAGGGACCAGGTTGTCCACGTTGGATTTCACGAAAAATCCCAAATTTTCAAGATTTCCCCACTTTTCTGTTTCTTTTATTTTCCCAAAATTCCACTTGTTTTGTTTGAAGTTTCTGTTGTTTCTCTCATCGGCCCCAGTTTCCTTGTTTCTTTCCTCTGAAACCTCGAAACTTCTCTGGCTGACTGTAACAAACATGGTTCTTTTGAGTAGTCAGCTGCACAGATTGCCGCTCTGCGTTTTGCCTCCTCGGGTTCCGATCTCCCACCGTTTTTCTTCCCCAAAAAGGAAATTAATGCCATGCCAATTTTGGTGGATCAAATCTTCGTCTTTACATGCAAGTAGTTTCATAGTACACAACAGAGCGAAATGTGAGGCCAGTTCTCAAAGGGCAGAAAATAAGCTAGATTCCACTGTGTATATAAATGTTGCAGATGATTTGAATGACCAACTCTTTTATACAGACCAAATTAATATTTCTCAGATCATCCAAGCAAAACTTCCCTCTATCATTCAAACTTTCGGGGCTGCCACCTTGCCCTTTGCCTGTGTCTCTAATTCATTGAATAAACCTGTGCCTCTTCGGTTGGATGTGTCTTTTCCTTCATTTCAAGACATTAGATGGAGCTTTGCACAGTTACTGTATCTATTTAACATCCAACTTGAAAAGAACGTTGCCACGTTCTTTCTGGTGCTCCTGGTAGCATGCTTCTCATTTGTTGTCATTGGTGGTTTCCTATTCTACAAGTATAGGGGTAGTAATGAGTCTTTGGATGACTGCTTCTGGGAGGCTTGGGCATGTCTGTGTTCATCATCGACACATTTAAAACAAAGAACACGAATTGAACGTGTTATTGGTTTTGTTCTTTCAATATGGGGCATATTATTTTACTCTCGCTTGTTGAGCACAATGACCGAACAGTTTAGGACTAAAAGAAGGCGCACAATGCAAGTTCTGGAGACTGATCATATCATTATATGTGGAGTGAACAGTCATCTTTCCTTCATGCTAAAGCAACTAAACAAGTATCACGAACTTGCTGTCTGCTTAGGTACTGCTACAGCTAGAATTCTTCTTATGTCCGATCTCCCAAGGAAGCAGATGGACAAACTTGCGGACAATTTAGACAAAGATCTTATAGATATTGATATCCTTACAAAGAGGTATGAAGTTGACACTGATGCTTTTTTGTCTGTTCTGGCTCTTCAACCTATTCCCAACATGGAATCTGTCCCCACAGTTGTTGAGGTTTCAAGTTCCAGTACATGTGAACTCTTAAAGTCGATCTCAGGGTTAAAAGTAGAGCCTGTGGAAAATGGGGCGTCAAAATTATTTGTACAATGTCCCCACAAAAATGTATTTAATCTTTGCAGTTTCCCAAGTCTAGCAGGGCTCAAGTACAGGAGATTACAACATGGGTTTCAAGAGGCAGTTGTTTGTGGGCTTTATAGGAACGGGAAGATAGACTTCCACCCCAATGACAGTGAAATCTTGCGGGAAACTGACTAA

Protein Analysis

507

Amino Acids

57.71

Weight (kDa)

9.06

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Castor_Poll_mid PF06241 454 - 506 6.3e-15 Castor and Pollux, part of voltage-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 244
AciI CCGC 3 cut(s) 242, 1127, 1507
AclI AACGTT 1 cut(s) 684
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 3 cut(s) 56, 101, 1080
AcyI GRCGYC 1 cut(s) 1334
AfaI GTAC 5 cut(s) 366, 1066, 1276, 1350, 1412
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 2 cut(s) 859, 1277
AjnI CCWGG 2 cut(s) 20, 708
AjuI GAANNNNNNNTTGG 4 cut(s) 495, 527, 849, 881
AluBI AGCT 4 cut(s) 229, 415, 639, 1076
AluI AGCT 4 cut(s) 229, 415, 639, 1076
Alw21I GWGCWC 2 cut(s) 708, 920
Alw26I GTCTC 2 cut(s) 568, 965
AlwI GGATC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 652
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 2 cut(s) 144, 387
ApeKI GCWGC 2 cut(s) 229, 539
ApoI RAATTY 3 cut(s) 56, 101, 1080
ArsI GACNNNNNNTTYG 2 cut(s) 1038, 1070
AseI ATTAAT 2 cut(s) 305, 483
AspLEI GCGC 1 cut(s) 954
AspS9I GGNCC 2 cut(s) 18, 145
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 18
BanII GRGCYC 1 cut(s) 1407
Bbv12I GWGCWC 2 cut(s) 708, 920
BbvI GCAGC 2 cut(s) 216, 526
BccI CCATC 2 cut(s) 627, 1108
BciT130I CCWGG 2 cut(s) 22, 710
BclI TGATCA 1 cut(s) 976
BcoDI GTCTC 2 cut(s) 568, 965
BfaI CTAG 3 cut(s) 416, 1077, 1397
BfmI CTRYAG 1 cut(s) 1071
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 3 cut(s) 230, 242, 540
BlsI GCNGC 3 cut(s) 231, 243, 541
Bme1390I CCNGG 2 cut(s) 22, 710
Bme18I GGWCC 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 2 cut(s) 18, 145
BmiI GGNNCC 3 cut(s) 19, 147, 267
BmrFI CCNGG 2 cut(s) 22, 710
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 1183
BmuI ACTGGG 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 989
Bpu10I CCTNAGC 1 cut(s) 1060
BpuEI CTTGAG 1 cut(s) 1391
BsaHI GRCGYC 1 cut(s) 1334
BsaJI CCNNGG 2 cut(s) 260, 1103
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 3 cut(s) 149, 390, 1272
BseBI CCWGG 2 cut(s) 22, 710
BseDI CCNNGG 2 cut(s) 260, 1103
BseGI GGATG 4 cut(s) 498, 607, 666, 790
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 2 cut(s) 506, 1314
BseNI ACTGG 3 cut(s) 149, 390, 1272
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 216, 526
BsgI GTGCAG 1 cut(s) 215
BshFI GGCC 2 cut(s) 146, 389
BsiHKAI GWGCWC 2 cut(s) 708, 920
BsiHKCI CYCGRG 1 cut(s) 261
BslFI GGGAC 3 cut(s) 31, 1229, 1341
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 568, 965
BsmFI GGGAC 3 cut(s) 31, 1229, 1341
BsnI GGCC 2 cut(s) 146, 389
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 708, 920, 1407
Bsp1407I TGTACA 1 cut(s) 1348
Bsp143I GATC 7 cut(s) 270, 327, 495, 976, 1096, 1144, 1296
BspACI CCGC 3 cut(s) 242, 1127, 1507
BspANI GGCC 2 cut(s) 146, 389
BspCNI CTCAG 2 cut(s) 505, 1313
BspLI GGNNCC 3 cut(s) 19, 147, 267
BspPI GGATC 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 1221
BsrBI CCGCTC 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 1348
BsrI ACTGG 3 cut(s) 149, 390, 1272
BssECI CCNNGG 2 cut(s) 260, 1103
BssMI GATC 7 cut(s) 270, 327, 495, 976, 1096, 1144, 1296
BssNI GRCGYC 1 cut(s) 1334
BssT1I CCWWGG 1 cut(s) 1103
Bst2UI CCWGG 2 cut(s) 22, 710
Bst4CI ACNGT 9 cut(s) 199, 281, 427, 648, 654, 933, 1004, 1252, 1496
Bst6I CTCTTC 2 cut(s) 597, 1221
BstACI GRCGYC 1 cut(s) 1334
BstAPI GCANNNNNTGC 1 cut(s) 238
BstAUI TGTACA 1 cut(s) 1348
BstC8I GCNNGC 1 cut(s) 718
BstDEI CTNAG 3 cut(s) 492, 1060, 1300
BstF5I GGATG 4 cut(s) 498, 607, 666, 790
BstHHI GCGC 1 cut(s) 954
BstKTI GATC 7 cut(s) 273, 330, 498, 979, 1099, 1147, 1299
BstMAI GTCTC 2 cut(s) 568, 965
BstMBI GATC 7 cut(s) 270, 327, 495, 976, 1096, 1144, 1296
BstMWI GCNNNNNNNGC 3 cut(s) 238, 915, 958
BstNI CCWGG 2 cut(s) 22, 710
BstNSI RCATGY 4 cut(s) 350, 720, 813, 1281
BstSCI CCNGG 2 cut(s) 20, 708
BstSFI CTRYAG 1 cut(s) 1071
BstV1I GCAGC 2 cut(s) 216, 526
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
BsuRI GGCC 2 cut(s) 146, 389
BtsCI GGATG 4 cut(s) 498, 607, 666, 790
BtsIMutI CAGTG 3 cut(s) 423, 1188, 1501
Cac8I GCNNGC 1 cut(s) 718
CaiI CAGNNNCTG 1 cut(s) 652
CfoI GCGC 1 cut(s) 954
Cfr13I GGNCC 2 cut(s) 18, 145
CseI GACGC 1 cut(s) 1323
CsiI ACCWGGT 1 cut(s) 20
Csp6I GTAC 5 cut(s) 365, 1065, 1275, 1349, 1411
CspCI CAANNNNNGTGG 6 cut(s) 95, 130, 305, 340, 1237, 1272
CviAII CATG 9 cut(s) 208, 312, 347, 717, 810, 1018, 1234, 1278, 1427
CviQI GTAC 5 cut(s) 365, 1065, 1275, 1349, 1411
DdeI CTNAG 3 cut(s) 492, 1060, 1300
DpnI GATC 7 cut(s) 272, 329, 497, 978, 1098, 1146, 1298
DpnII GATC 7 cut(s) 270, 327, 495, 976, 1096, 1144, 1296
DraI TTTAAA 1 cut(s) 837
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 597, 1221
EarI CTCTTC 2 cut(s) 597, 1221
Eco130I CCWWGG 1 cut(s) 1103
Eco24I GRGCYC 1 cut(s) 1407
Eco32I GATATC 1 cut(s) 1162
Eco47I GGWCC 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 1080
EcoRII CCWGG 2 cut(s) 20, 708
EcoRV GATATC 1 cut(s) 1162
EcoT14I CCWWGG 1 cut(s) 1103
EcoT38I GRGCYC 1 cut(s) 1407
ErhI CCWWGG 1 cut(s) 1103
FaeI CATG 9 cut(s) 211, 315, 350, 720, 813, 1021, 1237, 1281, 1430
FalI AAGNNNNNCTT 4 cut(s) 495, 527, 1463, 1495
FaqI GGGAC 3 cut(s) 31, 1229, 1341
FatI CATG 9 cut(s) 207, 311, 346, 716, 809, 1017, 1233, 1277, 1426
FauI CCCGC 1 cut(s) 1500
FbaI TGATCA 1 cut(s) 976
Fnu4HI GCNGC 3 cut(s) 230, 242, 540
FokI GGATG 4 cut(s) 485, 614, 653, 797
FriOI GRGCYC 1 cut(s) 1407
Fsp4HI GCNGC 3 cut(s) 230, 242, 540
FspBI CTAG 3 cut(s) 416, 1077, 1397
GlaI GCGC 1 cut(s) 953
GluI GCNGC 3 cut(s) 230, 242, 540
GsuI CTGGAG 1 cut(s) 989
HaeIII GGCC 2 cut(s) 146, 389
HgaI GACGC 1 cut(s) 1323
HhaI GCGC 1 cut(s) 954
Hin1I GRCGYC 1 cut(s) 1334
Hin1II CATG 9 cut(s) 211, 315, 350, 720, 813, 1021, 1237, 1281, 1430
Hin6I GCGC 1 cut(s) 952
HinP1I GCGC 1 cut(s) 952
HincII GTYRAC 1 cut(s) 1186
HindII GTYRAC 1 cut(s) 1186
HinfI GANTC 3 cut(s) 419, 776, 1238
Hpy166II GTNNAC 5 cut(s) 30, 367, 1000, 1186, 1283
Hpy188I TCNGA 4 cut(s) 172, 270, 495, 1096
Hpy188III TCNNGA 6 cut(s) 43, 63, 623, 968, 1043, 1436
Hpy8I GTNNAC 5 cut(s) 30, 367, 1000, 1186, 1283
HpyAV CCTTC 3 cut(s) 624, 942, 1024
HpyCH4III ACNGT 9 cut(s) 199, 281, 427, 648, 654, 933, 1004, 1252, 1496
HpyCH4IV ACGT 4 cut(s) 32, 684, 692, 859
HpyCH4V TGCA 6 cut(s) 232, 350, 443, 644, 961, 1383
HpyF10VI GCNNNNNNNGC 3 cut(s) 238, 915, 958
HpyF3I CTNAG 3 cut(s) 492, 1060, 1300
HpySE526I ACGT 4 cut(s) 32, 684, 692, 859
Hsp92I GRCGYC 1 cut(s) 1334
Hsp92II CATG 9 cut(s) 211, 315, 350, 720, 813, 1021, 1237, 1281, 1430
HspAI GCGC 1 cut(s) 952
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 7 cut(s) 270, 327, 495, 976, 1096, 1144, 1296
LguI GCTCTTC 1 cut(s) 1221
LmnI GCTCC 2 cut(s) 636, 711
Lsp1109I GCAGC 2 cut(s) 216, 526
LweI GCATC 1 cut(s) 1183
MabI ACCWGGT 1 cut(s) 20
MaeI CTAG 3 cut(s) 416, 1077, 1397
MaeII ACGT 4 cut(s) 32, 684, 692, 859
MaeIII GTNAC 2 cut(s) 199, 648
MalI GATC 7 cut(s) 272, 329, 497, 978, 1098, 1146, 1298
MbiI CCGCTC 1 cut(s) 244
MboI GATC 7 cut(s) 270, 327, 495, 976, 1096, 1144, 1296
MboII GAAGA 6 cut(s) 279, 327, 584, 1076, 1208, 1483
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 3 cut(s) 708, 920, 1407
MlyI GAGTC 1 cut(s) 785
MmeI TCCRAC 3 cut(s) 15, 579, 694
MseI TTAA 7 cut(s) 305, 483, 663, 836, 1289, 1307, 1374
MslI CAYNNNNRTG 3 cut(s) 814, 1365, 1488
MspA1I CMGCKG 1 cut(s) 229
MspR9I CCNGG 2 cut(s) 22, 710
MvaI CCWGG 2 cut(s) 22, 710
MwoI GCNNNNNNNGC 3 cut(s) 238, 915, 958
NdeII GATC 7 cut(s) 270, 327, 495, 976, 1096, 1144, 1296
NlaIII CATG 9 cut(s) 211, 315, 350, 720, 813, 1021, 1237, 1281, 1430
NlaIV GGNNCC 3 cut(s) 19, 147, 267
NspI RCATGY 4 cut(s) 350, 720, 813, 1281
PaeI GCATGC 1 cut(s) 720
PciI ACATGT 1 cut(s) 1277
PciSI GCTCTTC 1 cut(s) 1221
PcsI WCGNNNNNNNCGW 1 cut(s) 856
PfeI GAWTC 2 cut(s) 419, 1238
PkrI GCNGC 3 cut(s) 231, 243, 541
PleI GAGTC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 784
PscI ACATGT 1 cut(s) 1277
PshBI ATTAAT 2 cut(s) 305, 483
Psp1406I AACGTT 1 cut(s) 684
Psp6I CCWGG 2 cut(s) 20, 708
PspGI CCWGG 2 cut(s) 20, 708
PspN4I GGNNCC 3 cut(s) 19, 147, 267
PspPI GGNCC 2 cut(s) 18, 145
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 1144
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 5 cut(s) 366, 1066, 1276, 1350, 1412
RsaNI GTAC 5 cut(s) 365, 1065, 1275, 1349, 1411
RseI CAYNNNNRTG 3 cut(s) 814, 1365, 1488
SapI GCTCTTC 1 cut(s) 1221
SaqAI TTAA 7 cut(s) 305, 483, 663, 836, 1289, 1307, 1374
SatI GCNGC 3 cut(s) 230, 242, 540
Sau3AI GATC 7 cut(s) 270, 327, 495, 976, 1096, 1144, 1296
Sau96I GGNCC 2 cut(s) 18, 145
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 2 cut(s) 22, 710
SduI GDGCHC 3 cut(s) 708, 920, 1407
SexAI ACCWGGT 1 cut(s) 20
SfaNI GCATC 1 cut(s) 1183
SfcI CTRYAG 1 cut(s) 1071
SinI GGWCC 1 cut(s) 18
SmiMI CAYNNNNRTG 3 cut(s) 814, 1365, 1488
SmlI CTYRAG 1 cut(s) 1406
SmoI CTYRAG 1 cut(s) 1406
SphI GCATGC 1 cut(s) 720
SsiI CCGC 3 cut(s) 242, 1127, 1507
SspI AATATT 1 cut(s) 487
SspMI CTAG 3 cut(s) 416, 1077, 1397
StyD4I CCNGG 2 cut(s) 20, 708
StyI CCWWGG 1 cut(s) 1103
TaaI ACNGT 9 cut(s) 199, 281, 427, 648, 654, 933, 1004, 1252, 1496
TaiI ACGT 4 cut(s) 35, 687, 695, 862
TaqI TCGA 3 cut(s) 179, 827, 1295
TaqII GACCGA 1 cut(s) 941
TatI WGTACW 4 cut(s) 364, 1274, 1348, 1410
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 2 cut(s) 419, 1238
Tru1I TTAA 7 cut(s) 305, 483, 663, 836, 1289, 1307, 1374
Tru9I TTAA 7 cut(s) 305, 483, 663, 836, 1289, 1307, 1374
TscAI CASTG 3 cut(s) 430, 1195, 1501
TseI GCWGC 2 cut(s) 229, 539
TspDTI ATGAA 6 cut(s) 349, 561, 606, 810, 1006, 1194
TspRI CASTG 3 cut(s) 430, 1195, 1501
VpaK11BI GGWCC 1 cut(s) 18
VspI ATTAAT 2 cut(s) 305, 483
XapI RAATTY 3 cut(s) 56, 101, 1080
XceI RCATGY 4 cut(s) 350, 720, 813, 1281
XcmI CCANNNNNNNNNTGG 2 cut(s) 318, 697
XspI CTAG 3 cut(s) 416, 1077, 1397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.