Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001261

Physical Location & Seq

Genomic Coordinates Forward (+)

4519446 .. 4521604

Gene Structure 2159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36270

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTCTTTTTGTTTCATTGCCTTGGTGACCGTCATGTATCAAAGAATTATGTGTATTACTTATCCATATATAACTTGCATCTTTCACGTTTTACATATGTTGGGATTATTTTGTTTACAGGAAAAGGCAAGGTCAGGTCTCAAAAGACAGGCGATGGACTAGATTCCACTATGTACATAAATGTTGAAGATGATTCGGACACTGAACTCCTTAGGATAGAACTAGTAAAACGTTCTCAGGGGAGTATTCACCAAGCTAAAGTCTTGATGGGATTGACGTGCTTATATATTCCACTTAGACTGGCAAAGCTAAATGTCGTTGATACTTTCATTAAGAATGTCCAAGAAAGACTTCTCTGTGCTGTTCAAACTTCAGGGGCCGCCACCTTGCCTTTCGCCTGTGCTTCTAATTCTCTGAATAAGCCCATGCCTCCTGGATTGGATGTGTTGTTGCAATCATTTCAATATGTTAGAGGGAGCTTTGAACGATTGTTATATCTTTTTAACGTCCAACTTGAGAAAAATGTTGCCACGTACTTCATAGTGCTCCTGGTAGCATGTGTCTCATTTGTTATCATTGGTGGTTTCCTATATTTCAAGTTTAGGGATAGTAAAGAATCTTTGGAGGACTGCTTATGGGAAGCTTGGGCATGCCTGTGTTCATCATCGACACATCTAAAGCAAAGAACACGTAATGAACGTGTTACTGGTTTCGTTCTTGCTATAGGGGGCATATTATTTTACGGCCGCTTATCGAGCGCAATGACTGAACAGTTCCGGTGCAATATGGACAAACTCAGAGAAGGGGCACAAATGCCAGTTCTGGAGACTGATCACATCATTATTTGTGGAGTGAACAGTCATCTTCCTTTCATACTAGAGCAAATAAATAAGTATCATGAAGTTGCTGTCCGCTTAGGTACTACTACAGCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

312

Amino Acids

35.39

Weight (kDa)

8.74

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02940 AT5G02940 AT5G43745
fragaria_vesca	FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230
malus_domestica	MD11G1069300.v1.1 MD13G1204000.v1.1 MD16G1206000.v1.1
prunus_persica	Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1
pyrus_communis	pycom11g05780 pycom13g17720
rosa_chinensis	RchiOBHm_Chr4g0389551 RchiOBHm_Chr4g0389561 RchiOBHm_Chr4g0389571 RchiOBHm_Chr4g0389581
rosa_laevigata	RLG00000009970 RLG00000009971 RLG00000009972
rosa_multiflora	Rmu_co8238337.1_g000001 Rmu_co8398985.1_g000001 Rmu_sc0010540.1_g000001 Rmu_ssc0000478.1_g000001 Rmu_ssc0000478.1_g000002 Rmu_ssc0000478.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335510 Rroxscaffold_5G00335520 Rroxscaffold_5G00335530
rosa_rugosa	Rorug03G0324000
rosa_samantha	Rh2BG306500 Rh2CG284600 Rh4AG028300 Rh4AG028400 Rh4AG028500 Rh4BG021500 Rh4BG021600 Rh4BG021700 Rh4CG030500 Rh4CG030700 Rh4DG022100 Rh4DG022200 Rh4DG022300
rosa_wichuraiana	Rw4G002110 Rw4G002120 Rw4G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	381, 748, 913
AclI	AACGTT	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	745
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	3 cut(s)	176, 536, 922
AflIII	ACRYGT	2 cut(s)	689, 700
AgsI	TTSAA	5 cut(s)	188, 368, 464, 485, 598
AhlI	ACTAGT	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	279
AjnI	CCWGG	2 cut(s)	433, 549
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	5 cut(s)	257, 310, 480, 644, 932
AluI	AGCT	5 cut(s)	257, 310, 480, 644, 932
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	3 cut(s)	144, 568, 821
AoxI	GGCC	2 cut(s)	378, 745
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	38, 242
AxyI	CCTNAGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	811
Bbv12I	GWGCWC	1 cut(s)	549
BccI	CCATC	2 cut(s)	149, 262
BceAI	ACGGC	1 cut(s)	760
BciT130I	CCWGG	2 cut(s)	435, 551
BclI	TGATCA	1 cut(s)	832
BcoDI	GTCTC	3 cut(s)	144, 568, 821
BcuI	ACTAGT	1 cut(s)	223
BfaI	CTAG	4 cut(s)	161, 224, 878, 933
BfmI	CTRYAG	2 cut(s)	723, 927
BisI	GCNGC	2 cut(s)	381, 748
BlsI	GCNGC	2 cut(s)	382, 749
Bme1390I	CCNGG	2 cut(s)	435, 551
BmgBI	CACGTC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	2 cut(s)	435, 551
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	845
Bpu10I	CCTNAGC	1 cut(s)	916
BpuEI	CTTGAG	1 cut(s)	536
BsaAI	YACGTR	2 cut(s)	534, 692
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	777
Bse1I	ACTGG	3 cut(s)	306, 712, 818
Bse21I	CCTNAGG	1 cut(s)	212
Bse3DI	GCAATG	2 cut(s)	16, 768
BseBI	CCWGG	2 cut(s)	435, 551
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	448
BseMI	GCAATG	2 cut(s)	16, 768
BseMII	CTCAG	2 cut(s)	251, 811
BseNI	ACTGG	3 cut(s)	306, 712, 818
BseSI	GKGCMC	1 cut(s)	811
BseX3I	CGGCCG	1 cut(s)	745
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	2 cut(s)	380, 747
BsiEI	CGRYCG	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	778
BsmAI	GTCTC	3 cut(s)	144, 568, 821
BsnI	GGCC	2 cut(s)	380, 747
Bso31I	GGTCTC	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	549, 811
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	832
BspACI	CCGC	3 cut(s)	381, 748, 913
BspANI	GGCC	2 cut(s)	380, 747
BspCNI	CTCAG	2 cut(s)	250, 810
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	144
BsrDI	GCAATG	2 cut(s)	16, 768
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	306, 712, 818
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	832
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	435, 551
Bst4CI	ACNGT	3 cut(s)	32, 774, 860
BstAUI	TGTACA	1 cut(s)	174
BstBAI	YACGTR	2 cut(s)	534, 692
BstC8I	GCNNGC	1 cut(s)	652
BstDEI	CTNAG	5 cut(s)	212, 237, 296, 797, 916
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	1 cut(s)	835
BstMAI	GTCTC	3 cut(s)	144, 568, 821
BstMBI	GATC	1 cut(s)	832
BstMCI	CGRYCG	1 cut(s)	748
BstMWI	GCNNNNNNNGC	1 cut(s)	756
BstNI	CCWGG	2 cut(s)	435, 551
BstNSI	RCATGY	2 cut(s)	561, 654
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	433, 549
BstSFI	CTRYAG	2 cut(s)	723, 927
BstSLI	GKGCMC	1 cut(s)	811
BstZI	CGGCCG	1 cut(s)	745
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	380, 747
BtgZI	GCGATG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	652
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	1 cut(s)	761
Cfr13I	GGNCC	1 cut(s)	378
Csp6I	GTAC	3 cut(s)	175, 535, 921
CviAII	CATG	5 cut(s)	35, 427, 558, 651, 899
CviJI	RGCY	8 cut(s)	257, 310, 380, 424, 480, 644, 747, 932
CviKI_1	RGCY	8 cut(s)	257, 310, 380, 424, 480, 644, 747, 932
CviQI	GTAC	3 cut(s)	175, 535, 921
DdeI	CTNAG	5 cut(s)	212, 237, 296, 797, 916
DpnI	GATC	1 cut(s)	834
DpnII	GATC	1 cut(s)	832
EaeI	YGGCCR	1 cut(s)	745
EagI	CGGCCG	1 cut(s)	745
EclXI	CGGCCG	1 cut(s)	745
Eco130I	CCWWGG	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	144
Eco52I	CGGCCG	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	357
Eco81I	CCTNAGG	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	433, 549
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	5 cut(s)	38, 430, 561, 654, 902
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	5 cut(s)	34, 426, 557, 650, 898
FauNDI	CATATG	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	2 cut(s)	381, 748
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	2 cut(s)	381, 748
FspBI	CTAG	4 cut(s)	161, 224, 878, 933
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	2 cut(s)	381, 748
GsuI	CTGGAG	1 cut(s)	845
HaeIII	GGCC	2 cut(s)	380, 747
HapII	CCGG	1 cut(s)	778
HhaI	GCGC	1 cut(s)	761
Hin1II	CATG	5 cut(s)	38, 430, 561, 654, 902
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HindIII	AAGCTT	1 cut(s)	642
HinfI	GANTC	3 cut(s)	164, 194, 617
HpaII	CCGG	1 cut(s)	778
HphI	GGTGA	2 cut(s)	38, 242
Hpy166II	GTNNAC	2 cut(s)	117, 856
Hpy188I	TCNGA	3 cut(s)	199, 417, 800
Hpy188III	TCNNGA	3 cut(s)	265, 824, 899
Hpy8I	GTNNAC	2 cut(s)	117, 856
HpyAV	CCTTC	1 cut(s)	797
HpyCH4III	ACNGT	3 cut(s)	32, 774, 860
HpyCH4IV	ACGT	7 cut(s)	88, 232, 278, 507, 533, 691, 700
HpyCH4V	TGCA	3 cut(s)	79, 454, 783
HpyF10VI	GCNNNNNNNGC	1 cut(s)	756
HpyF3I	CTNAG	5 cut(s)	212, 237, 296, 797, 916
HpySE526I	ACGT	7 cut(s)	88, 232, 278, 507, 533, 691, 700
Hsp92II	CATG	5 cut(s)	38, 430, 561, 654, 902
HspAI	GCGC	1 cut(s)	759
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	1 cut(s)	832
LmnI	GCTCC	2 cut(s)	477, 552
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	4 cut(s)	161, 224, 878, 933
MaeII	ACGT	7 cut(s)	88, 232, 278, 507, 533, 691, 700
MaeIII	GTNAC	2 cut(s)	26, 703
MalI	GATC	1 cut(s)	834
MboI	GATC	1 cut(s)	832
MboII	GAAGA	2 cut(s)	200, 857
MhlI	GDGCHC	2 cut(s)	549, 811
MluCI	AATT	2 cut(s)	46, 409
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	3 cut(s)	441, 467, 619
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	2 cut(s)	333, 504
MslI	CAYNNNNRTG	1 cut(s)	655
MspI	CCGG	1 cut(s)	778
MspR9I	CCNGG	2 cut(s)	435, 551
MvaI	CCWGG	2 cut(s)	435, 551
MwoI	GCNNNNNNNGC	1 cut(s)	756
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	832
NlaIII	CATG	5 cut(s)	38, 430, 561, 654, 902
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	2 cut(s)	561, 654
PaeI	GCATGC	1 cut(s)	654
PagI	TCATGA	1 cut(s)	898
PcsI	WCGNNNNNNNCGW	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	164, 194, 617
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	382, 749
Ppu21I	YACGTR	2 cut(s)	534, 692
Psp1406I	AACGTT	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	433, 549
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	2 cut(s)	433, 549
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	378
RsaI	GTAC	3 cut(s)	176, 536, 922
RsaNI	GTAC	3 cut(s)	175, 535, 921
RseI	CAYNNNNRTG	1 cut(s)	655
SaqAI	TTAA	2 cut(s)	333, 504
SatI	GCNGC	2 cut(s)	381, 748
Sau3AI	GATC	1 cut(s)	832
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	435, 551
SduI	GDGCHC	2 cut(s)	549, 811
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	2 cut(s)	723, 927
SmiMI	CAYNNNNRTG	1 cut(s)	655
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SpeI	ACTAGT	1 cut(s)	223
SphI	GCATGC	1 cut(s)	654
Sse9I	AATT	2 cut(s)	46, 409
SsiI	CCGC	3 cut(s)	381, 748, 913
SspMI	CTAG	4 cut(s)	161, 224, 878, 933
StyD4I	CCNGG	2 cut(s)	433, 549
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	3 cut(s)	32, 774, 860
TaiI	ACGT	7 cut(s)	91, 235, 281, 510, 536, 694, 703
TaqI	TCGA	2 cut(s)	668, 755
TasI	AATT	2 cut(s)	46, 409
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	2 cut(s)	383, 750
TfiI	GAWTC	3 cut(s)	164, 194, 617
Tru1I	TTAA	2 cut(s)	333, 504
Tru9I	TTAA	2 cut(s)	333, 504
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	7 cut(s)	5, 319, 529, 651, 711, 862, 915
TspRI	CASTG	1 cut(s)	208
XceI	RCATGY	2 cut(s)	561, 654
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	4 cut(s)	161, 224, 878, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.