Rmu_co8398985.1_g000001

ion channel POLLUX-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8398985.1
Physical Location & Seq
Reverse (-)
2 .. 1263
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8398985.1_g000001.1.cds

Sequence Viewer

Length: 472 bp
tccaaacagggcagacaagcaatccgcctattcccttcttcttgctgaaaatatttgcaacaaacttggcgtgaaggtgcagaatctagttacagagattgtggactcgaaattggggaaacaaatcacaagaataaagccatccctgacttatattgctgtggaggaagtaatgagcctcgtaacagctcaagtcgccgtggacagtgaactaaatgaggtgtggaaagatattctgaatgcagaaggtgatgaaatatatgtgaagaatatcagactctatatgaaagaaggagagactccatccttcacggagcttgctaaaagagcacatttacggaaagaagttgccataggttttgtgaaaaacaataagaaggtcattaatccagttcccaaatcagaacccctgtcccttgagttgacagattcgttaatagttatatctgagcttgaaggagaacaaccgatc

Protein Analysis

157

Amino Acids

17.52

Weight (kDa)

5.35

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AgsI TTSAA 1 cut(s) 456
AluBI AGCT 3 cut(s) 189, 317, 452
AluI AGCT 3 cut(s) 189, 317, 452
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 291
AseI ATTAAT 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 332
BccI CCATC 2 cut(s) 149, 311
BceAI ACGGC 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 175, 438
BsaJI CCNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 2 cut(s) 141, 303
BseMII CTCAG 1 cut(s) 439
BseNI ACTGG 1 cut(s) 390
BsgI GTGCAG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 332
BslFI GGGAC 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 332
BspACI CCGC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 440
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 448
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 2 cut(s) 141, 303
BstKTI GATC 1 cut(s) 472
BstMAI GTCTC 1 cut(s) 291
BstMWI GCNNNNNNNGC 2 cut(s) 195, 327
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 2 cut(s) 141, 303
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 319
CviJI RGCY 5 cut(s) 140, 178, 189, 317, 452
CviKI_1 RGCY 5 cut(s) 140, 178, 189, 317, 452
DdeI CTNAG 1 cut(s) 448
DpnI GATC 1 cut(s) 471
EciI GGCGGA 1 cut(s) 14
FaiI YATR 7 cut(s) 154, 260, 262, 283, 285, 354, 444
FaqI GGGAC 1 cut(s) 398
FokI GGATG 2 cut(s) 128, 290
FspBI CTAG 1 cut(s) 87
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 5 cut(s) 83, 105, 277, 299, 429
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 4 cut(s) 104, 203, 210, 424
Hpy188I TCNGA 4 cut(s) 238, 276, 404, 449
Hpy8I GTNNAC 4 cut(s) 104, 203, 210, 424
HpyAV CCTTC 7 cut(s) 45, 68, 240, 285, 317, 371, 450
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 58, 80, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 327
HpyF3I CTNAG 1 cut(s) 448
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 3 cut(s) 159, 403, 423
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 89, 182
MalI GATC 1 cut(s) 471
MboII GAAGA 2 cut(s) 30, 278
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 1 cut(s) 111
MlyI GAGTC 3 cut(s) 99, 271, 293
MnlI CCTC 3 cut(s) 158, 189, 212
MseI TTAA 2 cut(s) 385, 435
Mva1269I GAATGC 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 195, 327
PctI GAATGC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 83, 429
PleI GAGTC 3 cut(s) 99, 271, 293
PpsI GAGTC 3 cut(s) 99, 271, 293
PshBI ATTAAT 1 cut(s) 385
SaqAI TTAA 2 cut(s) 385, 435
SchI GAGTC 3 cut(s) 99, 271, 293
SduI GDGCHC 1 cut(s) 332
SetI ASST 8 cut(s) 79, 191, 223, 251, 319, 359, 382, 454
SmlI CTYRAG 2 cut(s) 190, 417
SmoI CTYRAG 2 cut(s) 190, 417
Sse9I AATT 1 cut(s) 111
SsiI CCGC 1 cut(s) 25
SspI AATATT 1 cut(s) 53
SspMI CTAG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 111
TfiI GAWTC 2 cut(s) 83, 429
Tru1I TTAA 2 cut(s) 385, 435
Tru9I TTAA 2 cut(s) 385, 435
TscAI CASTG 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 268, 300
TspGWI ACGGA 2 cut(s) 327, 353
TspRI CASTG 1 cut(s) 212
VspI ATTAAT 1 cut(s) 385
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.