Rh4DG022300

ion channel POLLUX-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
3654864 .. 3663130
8267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG022300.1

Sequence Viewer

Length: 1539 bp
ATGGTTGTGAGTCAGTTGCAGCTATGCGTTTTGCCACATCGGTTTCCGAGACTCAATCCCTCTCCTTCTCCAAAGAGGAAATATATGCCCTGCCAGTTCTGGTGTATCCAATCTTCATCTTTACATGGACGTAATTTCATAACTCCAAACAGAGGAAAAGGCAAGGTCAGGTCTCAAAAGACAGGCGATGGACTAGATTCCACTATGTACATAAATGTTGAAGATGATTCGGACACTGAACTCCTTAGGATAGAACAAGTAAAACGTTCTCAGATTCACCAAGCAAAAGTCTTGATGGGATTGACGTGCTTATATATTCCACTTAGACTGGCAAAGCTAAATGTCGTTGATACTTTCATTAAGATTGTCCAAGAAAGACTTCTCTGTGCTGTTCAAACTTTAGGGGCCGCCACCTTGCCTTTCGCCTGTGCTTCTAATTCTCTGAATAAGCCCATGCCTCCTGGATTGGATGTGTTGTTGCAATCATTTCAATATGTTAGAGGGACCTTTGAACGATTGTTATACCTTTTTAACGTCCAACTTGAGAAAAATGTTGCCACGTACTTCATAGTGCTCCTGGTAGCATGTGTCTCATTTGTTATCATTGGTGGTTTCCTATATTTCAAGTTTAGGGATAGTAAAGAATCTTTGGAGGACTGCTTCTGGGAAGCTTGGGCATGCCTATGTTCATCATCTACACATCTAAAGCAAAGAACACGTAATGAACGTGTTACTGGTTTCGTTCTTGCTATAGGGGGCATATTATTTTACGGCCGCTTATCGAGCGCAATGACTGAACAGTTCCGGAGCAATATGGACAAGCTCAGAGAAGGGGCACAAATGCCAGTTCTGGAGACTGATCACATCATTATTTGTGGAGTGAACAGTCATATTTCTTTCATACTAAAGCAAATAAATAAGTATCATGAAGTTGCTGTCCGCTTAGGTACAACTACTGCTAGGAAGCAAAGAATTCTTCTTATGTCTGATCTAACAAGAGAGCAGATGCACAAGAAGGCTGACGATATGGCCAAAGATTTTAACCATATCGATATCCTTACAAAAAGGGCAGACAAGCAATCCGCCTATTCCCTTCTTCTTGCTGAAAATATTTGCAACAAACTTGGCGTGAAGGTGCAGAATCTAGTTACAGAGATCGTGGACTCGAAATTGGGGAAACAAATCACAAGAATAAAGTCATCCCTGACTTATATTGCTGTGGAGGAAGTAATGAGCCTCGTAACAGCTCAAGTCGCCGTGGACAGTGAACTAAATGAGGTGTGGAAAGATATTCTGAATGCAGAAGGTGATGAAATATATGTGAAGGATATCAGACTCTATATGAAAGAAGGAGAGACTCCATCGTTCACGGAGCTTGCTAAAAGAGCACATTTACGGAAAGAAGTTGCCATAGGTTATGTGAAAAAGAATAAGAAGGTCATTAATCCAGTTCCCAAATCAGAACCCCTGTCCCTTGAGTTGACAGATTCGTTAATAGTTATATCTGAACTTGAAGGAGAACAACCGATCATTATGTAG

Protein Analysis

512

Amino Acids

58.03

Weight (kDa)

8.96

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Castor_Poll_mid PF06241 408 - 506 6.5e-06 Castor and Pollux, part of voltage-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 804
AciI CCGC 4 cut(s) 408, 775, 940, 1083
AclI AACGTT 1 cut(s) 265
AcoI YGGCCR 2 cut(s) 772, 1029
AcsI RAATTY 1 cut(s) 972
AfaI GTAC 3 cut(s) 209, 563, 949
AfiI CCNNNNNNNGG 1 cut(s) 152
AflIII ACRYGT 2 cut(s) 716, 727
AgsI TTSAA 6 cut(s) 221, 395, 491, 512, 625, 1514
AjiI CACGTC 1 cut(s) 306
AjnI CCWGG 2 cut(s) 460, 576
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AluBI AGCT 6 cut(s) 22, 337, 671, 823, 1247, 1375
AluI AGCT 6 cut(s) 22, 337, 671, 823, 1247, 1375
Alw21I GWGCWC 2 cut(s) 576, 1390
Alw26I GTCTC 5 cut(s) 43, 177, 595, 848, 1349
Aor13HI TCCGGA 1 cut(s) 804
AoxI GGCC 3 cut(s) 405, 772, 1029
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 972
AseI ATTAAT 1 cut(s) 1443
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 788
AspS9I GGNCC 2 cut(s) 405, 504
AsuHPI GGTGA 2 cut(s) 269, 1319
AvaII GGWCC 1 cut(s) 504
AxyI CCTNAGG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 838
BalI TGGCCA 1 cut(s) 1031
BarI GAAGNNNNNNTAC 2 cut(s) 97, 129
Bbv12I GWGCWC 2 cut(s) 576, 1390
BbvI GCAGC 1 cut(s) 31
BccI CCATC 3 cut(s) 182, 289, 1369
BceAI ACGGC 2 cut(s) 787, 1241
BciT130I CCWGG 2 cut(s) 462, 578
BciVI GTATCC 1 cut(s) 116
BclI TGATCA 1 cut(s) 859
BcoDI GTCTC 5 cut(s) 43, 177, 595, 848, 1349
BfaI CTAG 3 cut(s) 194, 960, 1145
BfmI CTRYAG 1 cut(s) 750
BfuI GTATCC 1 cut(s) 116
BisI GCNGC 3 cut(s) 20, 408, 775
BlsI GCNGC 3 cut(s) 21, 409, 776
Bme1390I CCNGG 2 cut(s) 462, 578
Bme18I GGWCC 1 cut(s) 504
BmgBI CACGTC 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 405, 504
BmiI GGNNCC 2 cut(s) 406, 505
BmrFI CCNGG 2 cut(s) 462, 578
BmsI GCATC 1 cut(s) 996
BpmI CTGGAG 1 cut(s) 872
Bpu10I CCTNAGC 1 cut(s) 943
BpuEI CTTGAG 3 cut(s) 563, 1233, 1496
Bsa29I ATCGAT 1 cut(s) 1050
BsaAI YACGTR 2 cut(s) 561, 719
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 1257
BsaWI WCCGGW 1 cut(s) 804
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 5 cut(s) 94, 333, 739, 845, 1448
Bse21I CCTNAGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 795
BseAI TCCGGA 1 cut(s) 804
BseBI CCWGG 2 cut(s) 462, 578
BseCI ATCGAT 1 cut(s) 1050
BseDI CCNNGG 1 cut(s) 1257
BseGI GGATG 2 cut(s) 475, 1199
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 795
BseMII CTCAG 2 cut(s) 284, 838
BseNI ACTGG 5 cut(s) 94, 333, 739, 845, 1448
BseSI GKGCMC 1 cut(s) 838
BseX3I CGGCCG 1 cut(s) 772
BseXI GCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 1157
Bsh1285I CGRYCG 1 cut(s) 775
BshFI GGCC 3 cut(s) 407, 774, 1031
BshVI ATCGAT 1 cut(s) 1050
BsiEI CGRYCG 1 cut(s) 775
BsiHKAI GWGCWC 2 cut(s) 576, 1390
BsiSI CCGG 1 cut(s) 805
BslFI GGGAC 2 cut(s) 517, 1456
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 5 cut(s) 43, 177, 595, 848, 1349
BsmFI GGGAC 2 cut(s) 517, 1456
BsmI GAATGC 1 cut(s) 1303
BsnI GGCC 3 cut(s) 407, 774, 1031
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 3 cut(s) 576, 838, 1390
Bsp13I TCCGGA 1 cut(s) 804
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 4 cut(s) 859, 988, 1155, 1527
BspACI CCGC 4 cut(s) 408, 775, 940, 1083
BspANI GGCC 3 cut(s) 407, 774, 1031
BspCNI CTCAG 2 cut(s) 283, 837
BspDI ATCGAT 1 cut(s) 1050
BspEI TCCGGA 1 cut(s) 804
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 2 cut(s) 406, 505
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 795
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 5 cut(s) 94, 333, 739, 845, 1448
BssECI CCNNGG 1 cut(s) 1257
BssMI GATC 4 cut(s) 859, 988, 1155, 1527
Bst2UI CCWGG 2 cut(s) 462, 578
Bst4CI ACNGT 3 cut(s) 801, 887, 1265
BstAUI TGTACA 1 cut(s) 207
BstBAI YACGTR 2 cut(s) 561, 719
BstC8I GCNNGC 2 cut(s) 679, 1377
BstDEI CTNAG 5 cut(s) 245, 270, 323, 824, 943
BstDSI CCRYGG 1 cut(s) 1257
BstF5I GGATG 2 cut(s) 475, 1199
BstHHI GCGC 1 cut(s) 788
BstKTI GATC 4 cut(s) 862, 991, 1158, 1530
BstMAI GTCTC 5 cut(s) 43, 177, 595, 848, 1349
BstMBI GATC 4 cut(s) 859, 988, 1155, 1527
BstMCI CGRYCG 1 cut(s) 775
BstMWI GCNNNNNNNGC 3 cut(s) 783, 1253, 1385
BstNI CCWGG 2 cut(s) 462, 578
BstNSI RCATGY 2 cut(s) 588, 681
BstSCI CCNGG 2 cut(s) 460, 576
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 838
BstV1I GCAGC 1 cut(s) 31
BstZI CGGCCG 1 cut(s) 772
Bsu15I ATCGAT 1 cut(s) 1050
Bsu36I CCTNAGG 1 cut(s) 245
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 3 cut(s) 407, 774, 1031
BsuTUI ATCGAT 1 cut(s) 1050
BtgI CCRYGG 1 cut(s) 1257
BtgZI GCGATG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 306
BtsCI GGATG 2 cut(s) 475, 1199
BtsIMutI CAGTG 2 cut(s) 234, 1270
Cac8I GCNNGC 2 cut(s) 679, 1377
CciI TCATGA 1 cut(s) 925
CfoI GCGC 1 cut(s) 788
Cfr13I GGNCC 2 cut(s) 405, 504
ClaI ATCGAT 1 cut(s) 1050
Csp6I GTAC 3 cut(s) 208, 562, 948
CviAII CATG 5 cut(s) 125, 454, 585, 678, 926
CviQI GTAC 3 cut(s) 208, 562, 948
DdeI CTNAG 5 cut(s) 245, 270, 323, 824, 943
DpnI GATC 4 cut(s) 861, 990, 1157, 1529
DpnII GATC 4 cut(s) 859, 988, 1155, 1527
EaeI YGGCCR 2 cut(s) 772, 1029
EagI CGGCCG 1 cut(s) 772
EciI GGCGGA 1 cut(s) 1072
EclXI CGGCCG 1 cut(s) 772
Eco31I GGTCTC 1 cut(s) 177
Eco32I GATATC 2 cut(s) 1054, 1330
Eco47I GGWCC 1 cut(s) 504
Eco52I CGGCCG 1 cut(s) 772
Eco81I CCTNAGG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 504
EcoRI GAATTC 1 cut(s) 972
EcoRII CCWGG 2 cut(s) 460, 576
EcoRV GATATC 2 cut(s) 1054, 1330
FaeI CATG 5 cut(s) 128, 457, 588, 681, 929
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 2 cut(s) 517, 1456
FatI CATG 5 cut(s) 124, 453, 584, 677, 925
FbaI TGATCA 1 cut(s) 859
Fnu4HI GCNGC 3 cut(s) 20, 408, 775
FokI GGATG 2 cut(s) 482, 1186
Fsp4HI GCNGC 3 cut(s) 20, 408, 775
FspBI CTAG 3 cut(s) 194, 960, 1145
GlaI GCGC 1 cut(s) 787
GluI GCNGC 3 cut(s) 20, 408, 775
GsuI CTGGAG 1 cut(s) 872
HaeIII GGCC 3 cut(s) 407, 774, 1031
HapII CCGG 1 cut(s) 805
HhaI GCGC 1 cut(s) 788
Hin1II CATG 5 cut(s) 128, 457, 588, 681, 929
Hin6I GCGC 1 cut(s) 786
HinP1I GCGC 1 cut(s) 786
HincII GTYRAC 1 cut(s) 1482
HindII GTYRAC 1 cut(s) 1482
HindIII AAGCTT 1 cut(s) 669
HpaII CCGG 1 cut(s) 805
HphI GGTGA 2 cut(s) 269, 1319
Hpy166II GTNNAC 6 cut(s) 883, 1162, 1261, 1268, 1368, 1482
Hpy188III TCNNGA 4 cut(s) 292, 805, 851, 926
Hpy8I GTNNAC 6 cut(s) 883, 1162, 1261, 1268, 1368, 1482
HpyCH4III ACNGT 3 cut(s) 801, 887, 1265
HpyCH4IV ACGT 7 cut(s) 130, 265, 305, 534, 560, 718, 727
HpyCH4V TGCA 6 cut(s) 19, 481, 1009, 1116, 1138, 1301
HpyF10VI GCNNNNNNNGC 3 cut(s) 783, 1253, 1385
HpyF3I CTNAG 5 cut(s) 245, 270, 323, 824, 943
HpySE526I ACGT 7 cut(s) 130, 265, 305, 534, 560, 718, 727
Hsp92II CATG 5 cut(s) 128, 457, 588, 681, 929
HspAI GCGC 1 cut(s) 786
Kpn2I TCCGGA 1 cut(s) 804
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 4 cut(s) 859, 988, 1155, 1527
LmnI GCTCC 3 cut(s) 579, 807, 1372
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 996
MaeI CTAG 3 cut(s) 194, 960, 1145
MaeII ACGT 7 cut(s) 130, 265, 305, 534, 560, 718, 727
MaeIII GTNAC 3 cut(s) 730, 1147, 1240
MalI GATC 4 cut(s) 861, 990, 1157, 1529
MboI GATC 4 cut(s) 859, 988, 1155, 1527
MboII GAAGA 4 cut(s) 105, 233, 968, 1088
MhlI GDGCHC 3 cut(s) 576, 838, 1390
MlsI TGGCCA 1 cut(s) 1031
MluCI AATT 4 cut(s) 133, 436, 972, 1169
MluNI TGGCCA 1 cut(s) 1031
MlyI GAGTC 5 cut(s) 19, 45, 1157, 1329, 1351
MmeI TCCRAC 1 cut(s) 562
MnlI CCTC 9 cut(s) 69, 70, 146, 468, 494, 646, 1216, 1247, 1270
Mox20I TGGCCA 1 cut(s) 1031
MroI TCCGGA 1 cut(s) 804
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 1 cut(s) 1031
MseI TTAA 5 cut(s) 360, 531, 1041, 1443, 1493
MslI CAYNNNNRTG 1 cut(s) 682
Msp20I TGGCCA 1 cut(s) 1031
MspI CCGG 1 cut(s) 805
MspR9I CCNGG 2 cut(s) 462, 578
Mva1269I GAATGC 1 cut(s) 1303
MvaI CCWGG 2 cut(s) 462, 578
MwoI GCNNNNNNNGC 3 cut(s) 783, 1253, 1385
NdeII GATC 4 cut(s) 859, 988, 1155, 1527
NlaIII CATG 5 cut(s) 128, 457, 588, 681, 929
NlaIV GGNNCC 2 cut(s) 406, 505
NspI RCATGY 2 cut(s) 588, 681
PaeI GCATGC 1 cut(s) 681
PagI TCATGA 1 cut(s) 925
PcsI WCGNNNNNNNCGW 1 cut(s) 724
PctI GAATGC 1 cut(s) 1303
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 6 cut(s) 197, 227, 274, 644, 1141, 1487
PfoI TCCNGGA 1 cut(s) 460
PkrI GCNGC 3 cut(s) 21, 409, 776
PleI GAGTC 5 cut(s) 18, 45, 1157, 1329, 1351
PpsI GAGTC 5 cut(s) 18, 45, 1157, 1329, 1351
Ppu21I YACGTR 2 cut(s) 561, 719
PpuMI RGGWCCY 1 cut(s) 504
PshBI ATTAAT 1 cut(s) 1443
Psp1406I AACGTT 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 460, 576
PspGI CCWGG 2 cut(s) 460, 576
PspN4I GGNNCC 2 cut(s) 406, 505
PspPI GGNCC 2 cut(s) 405, 504
PspPPI RGGWCCY 1 cut(s) 504
RsaI GTAC 3 cut(s) 209, 563, 949
RsaNI GTAC 3 cut(s) 208, 562, 948
RseI CAYNNNNRTG 1 cut(s) 682
SaqAI TTAA 5 cut(s) 360, 531, 1041, 1443, 1493
SatI GCNGC 3 cut(s) 20, 408, 775
Sau3AI GATC 4 cut(s) 859, 988, 1155, 1527
Sau96I GGNCC 2 cut(s) 405, 504
SchI GAGTC 5 cut(s) 19, 45, 1157, 1329, 1351
ScrFI CCNGG 2 cut(s) 462, 578
SduI GDGCHC 3 cut(s) 576, 838, 1390
SfaNI GCATC 1 cut(s) 996
SfcI CTRYAG 1 cut(s) 750
SinI GGWCC 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 682
SmlI CTYRAG 3 cut(s) 542, 1248, 1475
SmoI CTYRAG 3 cut(s) 542, 1248, 1475
SphI GCATGC 1 cut(s) 681
Sse9I AATT 4 cut(s) 133, 436, 972, 1169
SsiI CCGC 4 cut(s) 408, 775, 940, 1083
SspI AATATT 1 cut(s) 1111
SspMI CTAG 3 cut(s) 194, 960, 1145
StyD4I CCNGG 2 cut(s) 460, 576
TaaI ACNGT 3 cut(s) 801, 887, 1265
TaiI ACGT 7 cut(s) 133, 268, 308, 537, 563, 721, 730
TaqI TCGA 3 cut(s) 782, 1050, 1166
TasI AATT 4 cut(s) 133, 436, 972, 1169
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 410, 777
TfiI GAWTC 6 cut(s) 197, 227, 274, 644, 1141, 1487
Tru1I TTAA 5 cut(s) 360, 531, 1041, 1443, 1493
Tru9I TTAA 5 cut(s) 360, 531, 1041, 1443, 1493
TscAI CASTG 2 cut(s) 241, 1270
TseI GCWGC 1 cut(s) 19
TspGWI ACGGA 2 cut(s) 1385, 1411
TspRI CASTG 2 cut(s) 241, 1270
VpaK11BI GGWCC 1 cut(s) 504
VspI ATTAAT 1 cut(s) 1443
XapI RAATTY 1 cut(s) 972
XceI RCATGY 2 cut(s) 588, 681
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 3 cut(s) 194, 960, 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.