Rmu_ssc0000478.1_g000002

ion channel POLLUX-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000478.1
Physical Location & Seq
Forward (+)
12018 .. 19333
7316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000478.1_g000002.1.cds

Sequence Viewer

Length: 1701 bp
atggttgtgagtcagttgcagctatgcgttttgccacaccggtttccgagactcaatccctctccttctccaaagaggaaatatatgccctgccagttctggtgtatccaatcttcatctttacatgggcgtaatttcataactccaaacagaggaaaaggcaaggtcaggtctcaaaagacaggcgatagactagattccaccatgtacataaatgttgaagctgattcggacactgaactccttaggatagaacaagtgaaacgctctcagattcaccaagctaaagtcttgatgggattgacgtgcttatatattccacttagactggcaaagctaaatgttgttgatactttcattaagatcgtccaagaaagacttatctgtgctgtccaaactttagaggctgccacgttgccttttgcctgtgcttctaattctctgaataagcccaagcctcttggattggatgtgttgttgcaatcatttcaagatgttagatggagatttgatcgattgttgtatctttttaacgtccaacttgagaaaaacgttgccacgtacttcatagtgctcctggtagcatgtgtctcatttgttatcactgggatagtaaagaatctttggaggactgcttctgggaagcttgggcatgcctatcaaagaacacgtattgaacgtgttattggtttcgttcttgctatatggggcatattattttactcccgcttattgagcacaatgactgaacagttccggagtaatatgtacaagctcagagaaggggcacaattgcaagttctggagactgatcacatcattatttgtggagtgaacagtcatcttcctttcatactaaagcaaataaataagtatcatgaagttgctgtccgcttaggtactgctacagttaggcagcaaagaattcttcttatgtctgatctaccaagagagcagatgcacaaaaaagttgacgatattgccaaagattttaaccatatcgatatccttacaaaaagttgtagcctgagcataacaaaatcatatgaaagagctgctgccaacaaggcacgtgccataatcatactgccaaaaaaggcagatcgttatgaagttgacactgatgcctttctatccgttctggctcttcaacctattcctaagatggaatccgtccccactattgttgaggcagttgtttgtgggctttatagaaatgggaagatatacttccacccaaatgatgatgagatcttgcaggaaactgacaaagtattgttcatttcacctgttaatgggggtaagaagtcttctattactaattcaaatgttaaagaaatgagcgatgccaatcaaagtttggaagatgtagaaaaggacagtgatactcaatcacatgccttaaaattaaggaaagaaaatacacgtcccaagagaagaggctccaaggcatcagacgggactctaggaccaacagaatttatacttcttcttggatggcggccagacgttgttgagatgattgaagaatatgacaattatctcggacctgggagtgtcgtgattggaaacccgatgaactttgacactttacaagaaaccataagcaatatccaacattctttgaagaatgaagatattcccttatccattgttgtaatatccgatagagaatggcttcttggaggtgaaattacctga

Protein Analysis

566

Amino Acids

64.18

Weight (kDa)

9.08

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 756
AciI CCGC 3 cut(s) 727, 892, 1501
AclI AACGTT 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 1502
AcsI RAATTY 2 cut(s) 924, 1478
AcvI CACGTG 1 cut(s) 1073
AfaI GTAC 4 cut(s) 209, 563, 770, 901
AfiI CCNNNNNNNGG 2 cut(s) 152, 1295
AflIII ACRYGT 3 cut(s) 668, 679, 1424
AgeI ACCGGT 1 cut(s) 39
AgsI TTSAA 7 cut(s) 221, 491, 677, 1151, 1326, 1526, 1627
AjiI CACGTC 2 cut(s) 306, 1427
AjnI CCWGG 2 cut(s) 576, 1549
AjuI GAANNNNNNNTTGG 4 cut(s) 669, 701, 1665, 1697
AluBI AGCT 7 cut(s) 22, 224, 284, 337, 646, 775, 1055
AluI AGCT 7 cut(s) 22, 224, 284, 337, 646, 775, 1055
Alw21I GWGCWC 2 cut(s) 576, 740
Alw26I GTCTC 4 cut(s) 43, 177, 595, 800
Aor13HI TCCGGA 1 cut(s) 756
AoxI GGCC 1 cut(s) 1502
ApeKI GCWGC 5 cut(s) 19, 407, 916, 1055, 1058
ApoI RAATTY 2 cut(s) 924, 1478
AsiGI ACCGGT 1 cut(s) 39
Asp700I GAANNNNTTC 2 cut(s) 1638, 1677
AspS9I GGNCC 2 cut(s) 1469, 1547
AsuHPI GGTGA 3 cut(s) 269, 1278, 1700
AvaII GGWCC 2 cut(s) 1469, 1547
AxyI CCTNAGG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 790
BarI GAAGNNNNNNTAC 4 cut(s) 97, 129, 1294, 1326
BbrPI CACGTG 1 cut(s) 1073
BbsI GAAGAC 1 cut(s) 1302
Bbv12I GWGCWC 2 cut(s) 576, 740
BbvI GCAGC 5 cut(s) 31, 394, 928, 1042, 1045
BccI CCATC 4 cut(s) 289, 495, 1159, 1491
BciT130I CCWGG 2 cut(s) 578, 1551
BciVI GTATCC 1 cut(s) 116
BclI TGATCA 1 cut(s) 811
BcoDI GTCTC 4 cut(s) 43, 177, 595, 800
BfaI CTAG 2 cut(s) 194, 1466
BfmI CTRYAG 1 cut(s) 906
BfuI GTATCC 1 cut(s) 116
BglI GCCNNNNNGGC 1 cut(s) 1067
BglII AGATCT 1 cut(s) 1251
BisI GCNGC 6 cut(s) 20, 408, 917, 1056, 1059, 1502
BlsI GCNGC 6 cut(s) 21, 409, 918, 1057, 1060, 1503
Bme1390I CCNGG 2 cut(s) 578, 1551
Bme18I GGWCC 2 cut(s) 1469, 1547
BmgBI CACGTC 2 cut(s) 306, 1427
BmgT120I GGNCC 2 cut(s) 1469, 1547
BmiI GGNNCC 1 cut(s) 1444
BmrFI CCNGG 2 cut(s) 578, 1551
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 4 cut(s) 948, 1114, 1336, 1460
BmuI ACTGGG 1 cut(s) 615
BpiI GAAGAC 1 cut(s) 1302
BpmI CTGGAG 1 cut(s) 824
Bpu10I CCTNAGC 2 cut(s) 895, 1028
BpuEI CTTGAG 1 cut(s) 563
Bsa29I ATCGAT 2 cut(s) 514, 1002
BsaAI YACGTR 3 cut(s) 561, 671, 1073
BsaBI GATNNNNATC 1 cut(s) 1350
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 1446, 1550
BsaWI WCCGGW 2 cut(s) 39, 756
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 1295
Bse118I RCCGGY 1 cut(s) 39
Bse1I ACTGG 3 cut(s) 94, 333, 610
Bse21I CCTNAGG 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 1350
BseAI TCCGGA 1 cut(s) 756
BseBI CCWGG 2 cut(s) 578, 1551
BseCI ATCGAT 2 cut(s) 514, 1002
BseDI CCNNGG 2 cut(s) 1446, 1550
BseGI GGATG 2 cut(s) 475, 1502
BseJI GATNNNNATC 1 cut(s) 1350
BseLI CCNNNNNNNGG 2 cut(s) 152, 1295
BseMII CTCAG 3 cut(s) 284, 790, 1019
BseNI ACTGG 3 cut(s) 94, 333, 610
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 5 cut(s) 31, 394, 928, 1042, 1045
BshFI GGCC 1 cut(s) 1504
BshTI ACCGGT 1 cut(s) 39
BshVI ATCGAT 2 cut(s) 514, 1002
BsiHKAI GWGCWC 2 cut(s) 576, 740
BsiSI CCGG 2 cut(s) 40, 757
BslFI GGGAC 3 cut(s) 1160, 1413, 1474
BslI CCNNNNNNNGG 2 cut(s) 152, 1295
BsmAI GTCTC 4 cut(s) 43, 177, 595, 800
BsmFI GGGAC 3 cut(s) 1160, 1413, 1474
BsnI GGCC 1 cut(s) 1504
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 3 cut(s) 576, 740, 790
Bsp13I TCCGGA 1 cut(s) 756
Bsp1407I TGTACA 2 cut(s) 207, 768
Bsp143I GATC 6 cut(s) 363, 511, 811, 940, 1102, 1251
BspACI CCGC 3 cut(s) 727, 892, 1501
BspANI GGCC 1 cut(s) 1504
BspCNI CTCAG 3 cut(s) 283, 789, 1020
BspDI ATCGAT 2 cut(s) 514, 1002
BspEI TCCGGA 1 cut(s) 756
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 1 cut(s) 1444
BspQI GCTCTTC 1 cut(s) 1152
BspTNI GGTCTC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 39
BsrGI TGTACA 2 cut(s) 207, 768
BsrI ACTGG 3 cut(s) 94, 333, 610
BssAI RCCGGY 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 1446, 1550
BssMI GATC 6 cut(s) 363, 511, 811, 940, 1102, 1251
BssT1I CCWWGG 1 cut(s) 1446
Bst2UI CCWGG 2 cut(s) 578, 1551
Bst4CI ACNGT 4 cut(s) 753, 839, 910, 1382
Bst6I CTCTTC 2 cut(s) 1152, 1432
BstAUI TGTACA 2 cut(s) 207, 768
BstBAI YACGTR 3 cut(s) 561, 671, 1073
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 7 cut(s) 245, 270, 323, 776, 895, 1028, 1161
BstF5I GGATG 2 cut(s) 475, 1502
BstKTI GATC 6 cut(s) 366, 514, 814, 943, 1105, 1254
BstMAI GTCTC 4 cut(s) 43, 177, 595, 800
BstMBI GATC 6 cut(s) 363, 511, 811, 940, 1102, 1251
BstMWI GCNNNNNNNGC 2 cut(s) 735, 1067
BstNI CCWGG 2 cut(s) 578, 1551
BstNSI RCATGY 3 cut(s) 588, 656, 1400
BstSCI CCNGG 2 cut(s) 576, 1549
BstSFI CTRYAG 1 cut(s) 906
BstSLI GKGCMC 1 cut(s) 790
BstV1I GCAGC 5 cut(s) 31, 394, 928, 1042, 1045
BstV2I GAAGAC 1 cut(s) 1302
BstX2I RGATCY 1 cut(s) 1251
BstYI RGATCY 1 cut(s) 1251
Bsu15I ATCGAT 2 cut(s) 514, 1002
Bsu36I CCTNAGG 1 cut(s) 245
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 1504
BsuTUI ATCGAT 2 cut(s) 514, 1002
BtgZI GCGATG 1 cut(s) 1359
BtrI CACGTC 2 cut(s) 306, 1427
BtsCI GGATG 2 cut(s) 475, 1502
BtsIMutI CAGTG 4 cut(s) 234, 603, 1119, 1387
Cac8I GCNNGC 1 cut(s) 654
CciI TCATGA 1 cut(s) 877
Cfr10I RCCGGY 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 1469, 1547
ClaI ATCGAT 2 cut(s) 514, 1002
Csp6I GTAC 4 cut(s) 208, 562, 769, 900
CspAI ACCGGT 1 cut(s) 39
CspCI CAANNNNNGTGG 2 cut(s) 1168, 1203
CviAII CATG 6 cut(s) 125, 205, 585, 653, 878, 1397
CviQI GTAC 4 cut(s) 208, 562, 769, 900
DdeI CTNAG 7 cut(s) 245, 270, 323, 776, 895, 1028, 1161
DpnI GATC 6 cut(s) 365, 513, 813, 942, 1104, 1253
DpnII GATC 6 cut(s) 363, 511, 811, 940, 1102, 1251
EaeI YGGCCR 1 cut(s) 1502
Eam1104I CTCTTC 2 cut(s) 1152, 1432
EarI CTCTTC 2 cut(s) 1152, 1432
Eco130I CCWWGG 1 cut(s) 1446
Eco31I GGTCTC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 1006
Eco47I GGWCC 2 cut(s) 1469, 1547
Eco72I CACGTG 1 cut(s) 1073
Eco81I CCTNAGG 1 cut(s) 245
EcoRI GAATTC 1 cut(s) 924
EcoRII CCWGG 2 cut(s) 576, 1549
EcoRV GATATC 1 cut(s) 1006
EcoT14I CCWWGG 1 cut(s) 1446
ErhI CCWWGG 1 cut(s) 1446
FaeI CATG 6 cut(s) 128, 208, 588, 656, 881, 1400
FalI AAGNNNNNCTT 4 cut(s) 363, 395, 1214, 1246
FaqI GGGAC 3 cut(s) 1160, 1413, 1474
FatI CATG 6 cut(s) 124, 204, 584, 652, 877, 1396
FauI CCCGC 1 cut(s) 734
FauNDI CATATG 1 cut(s) 1045
FbaI TGATCA 1 cut(s) 811
Fnu4HI GCNGC 6 cut(s) 20, 408, 917, 1056, 1059, 1502
FokI GGATG 2 cut(s) 482, 1509
Fsp4HI GCNGC 6 cut(s) 20, 408, 917, 1056, 1059, 1502
FspBI CTAG 2 cut(s) 194, 1466
GluI GCNGC 6 cut(s) 20, 408, 917, 1056, 1059, 1502
GsuI CTGGAG 1 cut(s) 824
HaeIII GGCC 1 cut(s) 1504
HapII CCGG 2 cut(s) 40, 757
Hin1II CATG 6 cut(s) 128, 208, 588, 656, 881, 1400
HincII GTYRAC 2 cut(s) 973, 1117
HindII GTYRAC 2 cut(s) 973, 1117
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 8 cut(s) 10, 51, 197, 227, 274, 619, 1169, 1462
HpaII CCGG 2 cut(s) 40, 757
HphI GGTGA 3 cut(s) 269, 1278, 1700
Hpy166II GTNNAC 3 cut(s) 835, 973, 1117
Hpy188I TCNGA 9 cut(s) 48, 232, 273, 444, 779, 940, 1456, 1547, 1666
Hpy188III TCNNGA 6 cut(s) 292, 491, 757, 803, 878, 1561
Hpy8I GTNNAC 3 cut(s) 835, 973, 1117
HpyAV CCTTC 2 cut(s) 75, 776
HpyCH4III ACNGT 4 cut(s) 753, 839, 910, 1382
HpyCH4V TGCA 5 cut(s) 19, 481, 796, 961, 1258
HpyF10VI GCNNNNNNNGC 2 cut(s) 735, 1067
HpyF3I CTNAG 7 cut(s) 245, 270, 323, 776, 895, 1028, 1161
Hsp92II CATG 6 cut(s) 128, 208, 588, 656, 881, 1400
Kpn2I TCCGGA 1 cut(s) 756
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 6 cut(s) 363, 511, 811, 940, 1102, 1251
LguI GCTCTTC 1 cut(s) 1152
LmnI GCTCC 2 cut(s) 579, 1448
Lsp1109I GCAGC 5 cut(s) 31, 394, 928, 1042, 1045
LweI GCATC 4 cut(s) 948, 1114, 1336, 1460
MaeI CTAG 2 cut(s) 194, 1466
MalI GATC 6 cut(s) 365, 513, 813, 942, 1104, 1253
MboI GATC 6 cut(s) 363, 511, 811, 940, 1102, 1251
MfeI CAATTG 1 cut(s) 791
MflI RGATCY 1 cut(s) 1251
MhlI GDGCHC 3 cut(s) 576, 740, 790
MluCI AATT 9 cut(s) 133, 436, 791, 924, 1321, 1406, 1478, 1537, 1692
MlyI GAGTC 3 cut(s) 19, 45, 1456
MmeI TCCRAC 2 cut(s) 562, 1639
MnlI CCTC 9 cut(s) 69, 70, 146, 397, 468, 621, 1183, 1433, 1679
MroI TCCGGA 1 cut(s) 756
MroXI GAANNNNTTC 2 cut(s) 1638, 1677
MseI TTAA 7 cut(s) 360, 531, 993, 1293, 1332, 1403, 1409
MslI CAYNNNNRTG 1 cut(s) 1239
MspI CCGG 2 cut(s) 40, 757
MspR9I CCNGG 2 cut(s) 578, 1551
MunI CAATTG 1 cut(s) 791
MvaI CCWGG 2 cut(s) 578, 1551
MwoI GCNNNNNNNGC 2 cut(s) 735, 1067
NdeI CATATG 1 cut(s) 1045
NdeII GATC 6 cut(s) 363, 511, 811, 940, 1102, 1251
NlaIII CATG 6 cut(s) 128, 208, 588, 656, 881, 1400
NlaIV GGNNCC 1 cut(s) 1444
NspI RCATGY 3 cut(s) 588, 656, 1400
PaeI GCATGC 1 cut(s) 656
PagI TCATGA 1 cut(s) 877
PciSI GCTCTTC 1 cut(s) 1152
PcsI WCGNNNNNNNCGW 1 cut(s) 676
PdmI GAANNNNTTC 2 cut(s) 1638, 1677
PfeI GAWTC 5 cut(s) 197, 227, 274, 619, 1169
PinAI ACCGGT 1 cut(s) 39
PkrI GCNGC 6 cut(s) 21, 409, 918, 1057, 1060, 1503
PleI GAGTC 3 cut(s) 18, 45, 1456
PmaCI CACGTG 1 cut(s) 1073
PmlI CACGTG 1 cut(s) 1073
PpsI GAGTC 3 cut(s) 18, 45, 1456
Ppu21I YACGTR 3 cut(s) 561, 671, 1073
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 576, 1549
PspCI CACGTG 1 cut(s) 1073
PspGI CCWGG 2 cut(s) 576, 1549
PspN4I GGNNCC 1 cut(s) 1444
PspPI GGNCC 2 cut(s) 1469, 1547
PsuI RGATCY 1 cut(s) 1251
RsaI GTAC 4 cut(s) 209, 563, 770, 901
RsaNI GTAC 4 cut(s) 208, 562, 769, 900
RseI CAYNNNNRTG 1 cut(s) 1239
SapI GCTCTTC 1 cut(s) 1152
SaqAI TTAA 7 cut(s) 360, 531, 993, 1293, 1332, 1403, 1409
SatI GCNGC 6 cut(s) 20, 408, 917, 1056, 1059, 1502
Sau3AI GATC 6 cut(s) 363, 511, 811, 940, 1102, 1251
Sau96I GGNCC 2 cut(s) 1469, 1547
SchI GAGTC 3 cut(s) 19, 45, 1456
ScrFI CCNGG 2 cut(s) 578, 1551
SduI GDGCHC 3 cut(s) 576, 740, 790
SfaNI GCATC 4 cut(s) 948, 1114, 1336, 1460
SfcI CTRYAG 1 cut(s) 906
SinI GGWCC 2 cut(s) 1469, 1547
SmiMI CAYNNNNRTG 1 cut(s) 1239
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SphI GCATGC 1 cut(s) 656
Sse9I AATT 9 cut(s) 133, 436, 791, 924, 1321, 1406, 1478, 1537, 1692
SsiI CCGC 3 cut(s) 727, 892, 1501
SspMI CTAG 2 cut(s) 194, 1466
StyD4I CCNGG 2 cut(s) 576, 1549
StyI CCWWGG 1 cut(s) 1446
TaaI ACNGT 4 cut(s) 753, 839, 910, 1382
TaqI TCGA 2 cut(s) 514, 1002
TasI AATT 9 cut(s) 133, 436, 791, 924, 1321, 1406, 1478, 1537, 1692
TatI WGTACW 2 cut(s) 207, 768
TauI GCSGC 1 cut(s) 1504
TfiI GAWTC 5 cut(s) 197, 227, 274, 619, 1169
Tru1I TTAA 7 cut(s) 360, 531, 993, 1293, 1332, 1403, 1409
Tru9I TTAA 7 cut(s) 360, 531, 993, 1293, 1332, 1403, 1409
TscAI CASTG 4 cut(s) 241, 610, 1126, 1387
TseI GCWGC 5 cut(s) 19, 407, 916, 1055, 1058
TspGWI ACGGA 2 cut(s) 1126, 1162
TspRI CASTG 4 cut(s) 241, 610, 1126, 1387
VpaK11BI GGWCC 2 cut(s) 1469, 1547
XapI RAATTY 2 cut(s) 924, 1478
XceI RCATGY 3 cut(s) 588, 656, 1400
XcmI CCANNNNNNNNNTGG 1 cut(s) 1357
XmnI GAANNNNTTC 2 cut(s) 1638, 1677
XspI CTAG 2 cut(s) 194, 1466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.