Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001261

Physical Location & Seq

Genomic Coordinates Forward (+)

5730755 .. 5739717

Gene Structure 8963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG028400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGGTTGTGAGTCAGTTGCAGCTATGCGTTTTGCCACACCGGTTTCCGAGACTCAATCCCTCTCCTTCTTCTCCAAAGAGGAAATATATGCCCTGCCAGTTCTGGTGTATCCAATCTTCATCTTTACATGGGCGTAATTTCATAACTCCAAACAGAGGAAAAGGCAAGGTCAGGTCTCAAAAGACAGGCGATAGACTAGATTCCACCATGTACATAAATGTTGAAGCTGATTCGGACACTGAACTCCTTAGGATAGAACAAGTGAAACGCTCTCAGATTCACCAAGCTAAAGTCTTGATGGGATTGACGTGCTTATATATTCCACTTAGACTGGCAAAGCTAAATGTTGTTGATACTTTCATTAAGATCGTCCAAGAAAGACTTATCTGTGCTGTCCAAACTTTAGAGGCTGCCACGTTGCCTTTTGCCTGTGCTTCTAATTCTCTGAATAAGCCCAAGCCTCTTGGATTGGATGTGTTGTTGCAATCATTTCAAGATGTTAGATGGAGATTTGATCGATTGTTGTATCTTTTTAACGTCCAACTTGAGAAAAACGTTGCCACGTACTTCATAGTGCTCCTGGTAGCATGTGTCTCATTTGTTATCACCGGTGGTTTCCTATATTTCAAGTTTAGGGATGGTAAAGAATCTTTGGAGGACTGCTTCTGGGAAGCTTGGGCATGCCTATGTTCACCTCACACACATCTAAAGCAAAGAACACGTATTGAACGTGTTATTGGTTTCGTTCTTGCTATATGGGGCATATTATTTTACTCCCGCTTATTGAGCACAATGACTGAACAGTTCCGGGAGATATTATCAGATGTACCGTTAGATGACAGAAATAAGGCAAGAAGAGGTGCCGGTCAAACCAAACTGAAACATGTGCGGGTTTCACATAAGATTGGAAACCCGATGAACTTTGACACTTTACAAGAAACCATAAGCAATATCCAACATTCTTTGAAGAATGAAGATATTCCCTTATCCATTGTTGTAATATCCGATAGAGAATGGCTTCTTGGAGATCCAAACAGGGCAGACAAGCAATCCGCCTTTTCCCTTCTTCTTGCTGAAAATATTTGCAACAAACTTGGCGTAAAGGTGCAGAATCTAGTTACAGAGATTGTGGACTCGAAATTGGGGAAACAAATCACAAGAATAAAGCCATCGCTGACTTATATTGCTGCGGAGGAAATAATGAGTCTCGTAACAGCTCAAGTCGCTGTGGAAAGTGAACTAAATGAGGTGTGGAAAGACATTCTGAATGCAGAAGGTGATGAAATATATGTGAAGGATATCAGACTCTATATGAAAGAAGGAGAGACTCCATCCTTCACGGAGCTTGCTGAAAGAGCTCATTTACGGAAGGAAGTTGCCATAGGTTATGTGAAAAACAATAAGAAGGTTATTAATCCAGTTCCCAAGTCAGAACCCCTCTCCCTTGAGTTGACAGATTCGTTAATAGTTATATCTGAACTTGAAGGAGAACAACCGGTCGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

502

Amino Acids

57.13

Weight (kDa)

8.72

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02940 AT5G02940 AT5G43745
fragaria_vesca	FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230
malus_domestica	MD11G1069300.v1.1 MD13G1204000.v1.1 MD16G1206000.v1.1
prunus_persica	Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1
pyrus_communis	pycom11g05780 pycom13g17720
rosa_chinensis	RchiOBHm_Chr4g0389551 RchiOBHm_Chr4g0389561 RchiOBHm_Chr4g0389571 RchiOBHm_Chr4g0389581
rosa_laevigata	RLG00000009970 RLG00000009971 RLG00000009972
rosa_multiflora	Rmu_co8238337.1_g000001 Rmu_co8398985.1_g000001 Rmu_sc0010540.1_g000001 Rmu_ssc0000478.1_g000001 Rmu_ssc0000478.1_g000002 Rmu_ssc0000478.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335510 Rroxscaffold_5G00335520 Rroxscaffold_5G00335530
rosa_rugosa	Rorug03G0324000
rosa_samantha	Rh2BG306500 Rh2CG284600 Rh4AG028300 Rh4AG028400 Rh4AG028500 Rh4BG021500 Rh4BG021600 Rh4BG021700 Rh4CG030500 Rh4CG030700 Rh4DG022100 Rh4DG022200 Rh4DG022300
rosa_wichuraiana	Rw4G002110 Rw4G002120 Rw4G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	860
AciI	CCGC	4 cut(s)	778, 889, 1053, 1190
AclI	AACGTT	1 cut(s)	555
AclWI	GGATC	1 cut(s)	1022
AfaI	GTAC	3 cut(s)	212, 566, 828
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	3 cut(s)	719, 730, 883
AgeI	ACCGGT	3 cut(s)	39, 608, 1495
AgsI	TTSAA	6 cut(s)	224, 494, 628, 728, 967, 1484
AjiI	CACGTC	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	579
AjuI	GAANNNNNNNTTGG	4 cut(s)	720, 752, 1005, 1037
AluBI	AGCT	8 cut(s)	22, 227, 287, 340, 674, 1217, 1345, 1358
AluI	AGCT	8 cut(s)	22, 227, 287, 340, 674, 1217, 1345, 1358
Alw21I	GWGCWC	3 cut(s)	579, 791, 1360
Alw26I	GTCTC	5 cut(s)	43, 180, 598, 1211, 1319
AlwI	GGATC	1 cut(s)	1022
ApeKI	GCWGC	3 cut(s)	19, 410, 1187
AseI	ATTAAT	1 cut(s)	1413
AsiGI	ACCGGT	3 cut(s)	39, 608, 1495
Asp700I	GAANNNNTTC	2 cut(s)	978, 1017
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	4 cut(s)	272, 598, 684, 1289
AxyI	CCTNAGG	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	860
BanII	GRGCYC	1 cut(s)	1360
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
Bbv12I	GWGCWC	3 cut(s)	579, 791, 1360
BbvI	GCAGC	3 cut(s)	31, 397, 1174
BccI	CCATC	5 cut(s)	292, 498, 632, 1177, 1339
BciT130I	CCWGG	1 cut(s)	581
BciVI	GTATCC	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	809
BcoDI	GTCTC	5 cut(s)	43, 180, 598, 1211, 1319
BfaI	CTAG	2 cut(s)	197, 1115
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	3 cut(s)	20, 411, 1188
BlsI	GCNGC	3 cut(s)	21, 412, 1189
Bme1390I	CCNGG	2 cut(s)	581, 809
BmgBI	CACGTC	1 cut(s)	309
BmiI	GGNNCC	1 cut(s)	862
BmrFI	CCNGG	2 cut(s)	581, 809
BpuEI	CTTGAG	3 cut(s)	566, 1203, 1466
BpuMI	CCSGG	1 cut(s)	809
Bsa29I	ATCGAT	1 cut(s)	517
BsaAI	YACGTR	2 cut(s)	564, 722
BsaI	GGTCTC	1 cut(s)	180
BsaWI	WCCGGW	3 cut(s)	39, 608, 1495
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	4 cut(s)	39, 608, 863, 1495
Bse1I	ACTGG	3 cut(s)	97, 336, 1418
Bse21I	CCTNAGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	581
BseCI	ATCGAT	1 cut(s)	517
BseGI	GGATG	3 cut(s)	478, 643, 1331
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	3 cut(s)	97, 336, 1418
BseXI	GCAGC	3 cut(s)	31, 397, 1174
BsgI	GTGCAG	1 cut(s)	1127
Bsh1285I	CGRYCG	1 cut(s)	1500
BshNI	GGYRCC	1 cut(s)	860
BshTI	ACCGGT	3 cut(s)	39, 608, 1495
BshVI	ATCGAT	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	1500
BsiHKAI	GWGCWC	3 cut(s)	579, 791, 1360
BsiSI	CCGG	5 cut(s)	40, 609, 808, 864, 1496
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	5 cut(s)	43, 180, 598, 1211, 1319
BsmI	GAATGC	1 cut(s)	1273
Bso31I	GGTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	3 cut(s)	579, 791, 1360
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	366, 514, 1027
BspACI	CCGC	4 cut(s)	778, 889, 1053, 1190
BspCNI	CTCAG	1 cut(s)	286
BspDI	ATCGAT	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	862
BspPI	GGATC	1 cut(s)	1022
BspT107I	GGYRCC	1 cut(s)	860
BspTNI	GGTCTC	1 cut(s)	180
BsrFI	RCCGGY	4 cut(s)	39, 608, 863, 1495
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	97, 336, 1418
BssAI	RCCGGY	4 cut(s)	39, 608, 863, 1495
BssMI	GATC	3 cut(s)	366, 514, 1027
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	2 cut(s)	804, 831
Bst6I	CTCTTC	1 cut(s)	850
BstAUI	TGTACA	1 cut(s)	210
BstBAI	YACGTR	2 cut(s)	564, 722
BstC8I	GCNNGC	2 cut(s)	682, 1347
BstDEI	CTNAG	3 cut(s)	248, 273, 326
BstF5I	GGATG	3 cut(s)	478, 643, 1331
BstKTI	GATC	3 cut(s)	369, 517, 1030
BstMAI	GTCTC	5 cut(s)	43, 180, 598, 1211, 1319
BstMBI	GATC	3 cut(s)	366, 514, 1027
BstMCI	CGRYCG	1 cut(s)	1500
BstMWI	GCNNNNNNNGC	3 cut(s)	786, 1223, 1355
BstNI	CCWGG	1 cut(s)	581
BstNSI	RCATGY	3 cut(s)	591, 684, 887
BstSCI	CCNGG	2 cut(s)	579, 807
BstV1I	GCAGC	3 cut(s)	31, 397, 1174
BstX2I	RGATCY	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1027
Bsu15I	ATCGAT	1 cut(s)	517
Bsu36I	CCTNAGG	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	119
BsuTUI	ATCGAT	1 cut(s)	517
BtgZI	GCGATG	1 cut(s)	1155
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	478, 643, 1331
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	682, 1347
Cfr10I	RCCGGY	4 cut(s)	39, 608, 863, 1495
ClaI	ATCGAT	1 cut(s)	517
Csp6I	GTAC	3 cut(s)	211, 565, 827
CspAI	ACCGGT	3 cut(s)	39, 608, 1495
CviAII	CATG	5 cut(s)	128, 208, 588, 681, 884
CviQI	GTAC	3 cut(s)	211, 565, 827
DdeI	CTNAG	3 cut(s)	248, 273, 326
DpnI	GATC	3 cut(s)	368, 516, 1029
DpnII	GATC	3 cut(s)	366, 514, 1027
Eam1104I	CTCTTC	1 cut(s)	850
EarI	CTCTTC	1 cut(s)	850
EciI	GGCGGA	1 cut(s)	1042
Ecl136II	GAGCTC	1 cut(s)	1358
Eco24I	GRGCYC	1 cut(s)	1360
Eco31I	GGTCTC	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	1300
Eco53kI	GAGCTC	1 cut(s)	1358
Eco81I	CCTNAGG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	1358
EcoRII	CCWGG	1 cut(s)	579
EcoRV	GATATC	1 cut(s)	1300
EcoT38I	GRGCYC	1 cut(s)	1360
FaeI	CATG	5 cut(s)	131, 211, 591, 684, 887
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	5 cut(s)	127, 207, 587, 680, 883
FauI	CCCGC	2 cut(s)	785, 882
Fnu4HI	GCNGC	3 cut(s)	20, 411, 1188
FokI	GGATG	3 cut(s)	485, 650, 1318
FriOI	GRGCYC	1 cut(s)	1360
Fsp4HI	GCNGC	3 cut(s)	20, 411, 1188
FspBI	CTAG	2 cut(s)	197, 1115
GluI	GCNGC	3 cut(s)	20, 411, 1188
HapII	CCGG	5 cut(s)	40, 609, 808, 864, 1496
Hin1II	CATG	5 cut(s)	131, 211, 591, 684, 887
HincII	GTYRAC	1 cut(s)	1452
HindII	GTYRAC	1 cut(s)	1452
HindIII	AAGCTT	1 cut(s)	672
HpaII	CCGG	5 cut(s)	40, 609, 808, 864, 1496
HphI	GGTGA	4 cut(s)	272, 598, 684, 1289
Hpy166II	GTNNAC	4 cut(s)	692, 1132, 1238, 1452
Hpy188III	TCNNGA	2 cut(s)	295, 494
Hpy8I	GTNNAC	4 cut(s)	692, 1132, 1238, 1452
HpyAV	CCTTC	9 cut(s)	75, 1073, 1268, 1288, 1313, 1345, 1363, 1399, 1478
HpyCH4III	ACNGT	2 cut(s)	804, 831
HpyCH4IV	ACGT	7 cut(s)	308, 416, 537, 555, 563, 721, 730
HpyCH4V	TGCA	5 cut(s)	19, 484, 1086, 1108, 1271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	786, 1223, 1355
HpyF3I	CTNAG	3 cut(s)	248, 273, 326
HpySE526I	ACGT	7 cut(s)	308, 416, 537, 555, 563, 721, 730
Hsp92II	CATG	5 cut(s)	131, 211, 591, 684, 887
Kzo9I	GATC	3 cut(s)	366, 514, 1027
LmnI	GCTCC	2 cut(s)	582, 1342
Lsp1109I	GCAGC	3 cut(s)	31, 397, 1174
MaeI	CTAG	2 cut(s)	197, 1115
MaeII	ACGT	7 cut(s)	308, 416, 537, 555, 563, 721, 730
MaeIII	GTNAC	2 cut(s)	1117, 1210
MalI	GATC	3 cut(s)	368, 516, 1029
MboI	GATC	3 cut(s)	366, 514, 1027
MboII	GAAGA	6 cut(s)	60, 108, 867, 979, 986, 1058
MflI	RGATCY	1 cut(s)	1027
MhlI	GDGCHC	3 cut(s)	579, 791, 1360
MluCI	AATT	3 cut(s)	136, 439, 1139
MlyI	GAGTC	6 cut(s)	19, 45, 1127, 1213, 1299, 1321
MmeI	TCCRAC	2 cut(s)	565, 979
MroXI	GAANNNNTTC	2 cut(s)	978, 1017
MseI	TTAA	4 cut(s)	363, 534, 1413, 1463
MslI	CAYNNNNRTG	1 cut(s)	685
MspI	CCGG	5 cut(s)	40, 609, 808, 864, 1496
MspR9I	CCNGG	2 cut(s)	581, 809
Mva1269I	GAATGC	1 cut(s)	1273
MvaI	CCWGG	1 cut(s)	581
MwoI	GCNNNNNNNGC	3 cut(s)	786, 1223, 1355
NciI	CCSGG	1 cut(s)	809
NdeII	GATC	3 cut(s)	366, 514, 1027
NlaIII	CATG	5 cut(s)	131, 211, 591, 684, 887
NlaIV	GGNNCC	1 cut(s)	862
NspI	RCATGY	3 cut(s)	591, 684, 887
PaeI	GCATGC	1 cut(s)	684
PciI	ACATGT	1 cut(s)	883
PcsI	WCGNNNNNNNCGW	1 cut(s)	727
PctI	GAATGC	1 cut(s)	1273
PdmI	GAANNNNTTC	2 cut(s)	978, 1017
PfeI	GAWTC	6 cut(s)	200, 230, 277, 647, 1111, 1457
PfoI	TCCNGGA	1 cut(s)	807
PinAI	ACCGGT	3 cut(s)	39, 608, 1495
PkrI	GCNGC	3 cut(s)	21, 412, 1189
PleI	GAGTC	6 cut(s)	18, 45, 1127, 1212, 1299, 1321
PpsI	GAGTC	6 cut(s)	18, 45, 1127, 1212, 1299, 1321
Ppu21I	YACGTR	2 cut(s)	564, 722
PscI	ACATGT	1 cut(s)	883
PshBI	ATTAAT	1 cut(s)	1413
Psp124BI	GAGCTC	1 cut(s)	1360
Psp1406I	AACGTT	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	862
PsuI	RGATCY	1 cut(s)	1027
RsaI	GTAC	3 cut(s)	212, 566, 828
RsaNI	GTAC	3 cut(s)	211, 565, 827
RseI	CAYNNNNRTG	1 cut(s)	685
SacI	GAGCTC	1 cut(s)	1360
SaqAI	TTAA	4 cut(s)	363, 534, 1413, 1463
SatI	GCNGC	3 cut(s)	20, 411, 1188
Sau3AI	GATC	3 cut(s)	366, 514, 1027
SchI	GAGTC	6 cut(s)	19, 45, 1127, 1213, 1299, 1321
ScrFI	CCNGG	2 cut(s)	581, 809
SduI	GDGCHC	3 cut(s)	579, 791, 1360
SgrAI	CRCCGGYG	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	685
SmlI	CTYRAG	3 cut(s)	545, 1218, 1445
SmoI	CTYRAG	3 cut(s)	545, 1218, 1445
SphI	GCATGC	1 cut(s)	684
Sse9I	AATT	3 cut(s)	136, 439, 1139
SsiI	CCGC	4 cut(s)	778, 889, 1053, 1190
SspI	AATATT	1 cut(s)	1081
SspMI	CTAG	2 cut(s)	197, 1115
SstI	GAGCTC	1 cut(s)	1360
StyD4I	CCNGG	2 cut(s)	579, 807
TaaI	ACNGT	2 cut(s)	804, 831
TaiI	ACGT	7 cut(s)	311, 419, 540, 558, 566, 724, 733
TaqI	TCGA	2 cut(s)	517, 1136
TasI	AATT	3 cut(s)	136, 439, 1139
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	6 cut(s)	200, 230, 277, 647, 1111, 1457
Tru1I	TTAA	4 cut(s)	363, 534, 1413, 1463
Tru9I	TTAA	4 cut(s)	363, 534, 1413, 1463
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	3 cut(s)	19, 410, 1187
TspDTI	ATGAA	8 cut(s)	108, 130, 349, 559, 932, 987, 1296, 1328
TspGWI	ACGGA	2 cut(s)	1355, 1381
TspRI	CASTG	1 cut(s)	244
VspI	ATTAAT	1 cut(s)	1413
XceI	RCATGY	3 cut(s)	591, 684, 887
XmnI	GAANNNNTTC	2 cut(s)	978, 1017
XspI	CTAG	2 cut(s)	197, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.