Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010540.1

Orthogroup ID

OG0001261

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 429

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010540.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

atgaaagaaggagagactccatccttcacggagcttgctgaaagagctcacttacggaaggaagttgccataggttatgtgaaaaacaataagaaggttgttaatccagttcccaagtcagaacccctctcccttgagttgacagattcgttaatagttatatctgaacttgaaggagaacaaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

62

Amino Acids

6.89

Weight (kDa)

5.05

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02940 AT5G02940 AT5G43745
fragaria_vesca	FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230
malus_domestica	MD11G1069300.v1.1 MD13G1204000.v1.1 MD16G1206000.v1.1
prunus_persica	Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1
pyrus_communis	pycom11g05780 pycom13g17720
rosa_chinensis	RchiOBHm_Chr4g0389551 RchiOBHm_Chr4g0389561 RchiOBHm_Chr4g0389571 RchiOBHm_Chr4g0389581
rosa_laevigata	RLG00000009970 RLG00000009971 RLG00000009972
rosa_multiflora	Rmu_co8238337.1_g000001 Rmu_co8398985.1_g000001 Rmu_sc0010540.1_g000001 Rmu_ssc0000478.1_g000001 Rmu_ssc0000478.1_g000002 Rmu_ssc0000478.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335510 Rroxscaffold_5G00335520 Rroxscaffold_5G00335530
rosa_rugosa	Rorug03G0324000
rosa_samantha	Rh2BG306500 Rh2CG284600 Rh4AG028300 Rh4AG028400 Rh4AG028500 Rh4BG021500 Rh4BG021600 Rh4BG021700 Rh4CG030500 Rh4CG030700 Rh4DG022100 Rh4DG022200 Rh4DG022300
rosa_wichuraiana	Rw4G002110 Rw4G002120 Rw4G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	2 cut(s)	34, 47
AluI	AGCT	2 cut(s)	34, 47
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	49
BccI	CCATC	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	36
CviJI	RGCY	2 cut(s)	34, 47
CviKI_1	RGCY	2 cut(s)	34, 47
Ecl136II	GAGCTC	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	49
FaiI	YATR	3 cut(s)	71, 78, 161
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	16, 146
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	121, 166
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	4 cut(s)	34, 52, 88, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	1 cut(s)	137
MseI	TTAA	2 cut(s)	102, 152
MwoI	GCNNNNNNNGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	102, 152
SchI	GAGTC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	4 cut(s)	36, 49, 76, 99
SgeI	CNNG	6 cut(s)	40, 47, 119, 127, 146, 182
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	102, 152
Tru9I	TTAA	2 cut(s)	102, 152
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	44, 70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.