Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001261

Physical Location & Seq

Genomic Coordinates Forward (+)

4521648 .. 4526579

Gene Structure 4932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36271

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGATTACGCTACTGGCTTGTGTATTTTCTATTGAATTATGCGTTCACAGGAAGCAAAGAATTCTTCTTATGTCTGATCTAACAAGAGAGCAGATGCACAAGAAGGCTGACGATATGGCCAAAGATTTTAACCATATCGATGTCCTTACAAAAAGTTGTAGCCTGAGCTTAACAAAATCATATGAAAGAGCTGCAGCAAACAAGGCACGTGCCATAATTATACTGCCAAAAATGGCAGATCGGTATGAAGTTGACACTGATGCCTTTCTATCCGTTCTGGCTCTTCAACCTATTCCTAAGATGGAATCCGTCCCCACTATTGTTGAGGTTTCAAGTTCAAAGACATGCGAGCTTTTGAAGTCAATCTCAGGGTTGAAAGTAGAGCCTGTGGAGAACGTTGCATCCAAATTATTTGTTCAATGCTCTCGTCAACAAGGACTCATAAAGATCTACAGACACTTGCTTAATTATCGAAAAAATGTGTTCAATCTTCGCAGTTCTCCTAGTCAGGCAGGGCTGAAGTACAGTCAATTAGGACCTCAGTGTCAAGAGGCAGTTGTTTGTGGGCTTTATAGAAATGGGAAGATATACTTCCACCCAAATGATGATGAGATCTTGCAGGAAACTGACAAAGCTTCAGACGGGACTCTAGGACCAACAGAATTTATACTTCTTCTTGGATGGCGGCCAGACGTTGTTGAGATGATTGAAGAATATGACAATTATCTCGGACCTGGGAGTGTCGTGGAGATATTATCAGATGTACCAGTAGATGACAGAAAAAAGGCAAGAAATGGTGCCTGTCAAGCCAAACTAAAACATGTGCAGGTTTCACATAAGATTGGAAACCCAATGAACTTTGACACTTTACAAGAAACCATAAGCAATATCCAACATTCTTTGAAGAATGAAGATATTCCCTTATCCATTGTTGTAATATCTGATAGAGAATGGCTTCTTGGAGATCCAAACAGGGCAGACAAGCAATCCGCCTATTCCCTTCTTCTTGCTGAAAATATTTGCAACAAACTTGGCGTGAAGGTGCAGAATCTAGTTACAGAGATTGTGGACTCGAAATTGGGGAAACAAATCACAAGAATAAAGCCATCCCTGACTTATATTGCTGTGGAGGAAGTAATGAGCCTCGTAACAGCTCAAGTCGCCGTGGACAGTGAACTAAATGAGGTGTGGAAAGATATTCTGAATGCAGAAGGTGATGAAATATATGTGAAGGATATCAGACTCTATATGAAAGAAGGAGAGACTCCATCGTTCACGGAGCTTGCTAAAAGAGCACATTTACGGAAAGAAGTTGCCATAGGTTATGTGAAAAACAATAAGAAGGTCATTAATCCAGTTCCCAAATCAGAACCCCTGTCCCTTGAGTTGACAGATTCGTTAATAGTTATATCTGAACTTGAAGGAGAACAACCGATCGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

481

Amino Acids

53.96

Weight (kDa)

5.96

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Castor_Poll_mid	PF06241	131 - 211	1.7e-31	Castor and Pollux, part of voltage-gated ion channel
Castor_Poll_mid	PF06241	377 - 475	5.1e-06	Castor and Pollux, part of voltage-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02940 AT5G02940 AT5G43745
fragaria_vesca	FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230
malus_domestica	MD11G1069300.v1.1 MD13G1204000.v1.1 MD16G1206000.v1.1
prunus_persica	Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1
pyrus_communis	pycom11g05780 pycom13g17720
rosa_chinensis	RchiOBHm_Chr4g0389551 RchiOBHm_Chr4g0389561 RchiOBHm_Chr4g0389571 RchiOBHm_Chr4g0389581
rosa_laevigata	RLG00000009970 RLG00000009971 RLG00000009972
rosa_multiflora	Rmu_co8238337.1_g000001 Rmu_co8398985.1_g000001 Rmu_sc0010540.1_g000001 Rmu_ssc0000478.1_g000001 Rmu_ssc0000478.1_g000002 Rmu_ssc0000478.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335510 Rroxscaffold_5G00335520 Rroxscaffold_5G00335530
rosa_rugosa	Rorug03G0324000
rosa_samantha	Rh2BG306500 Rh2CG284600 Rh4AG028300 Rh4AG028400 Rh4AG028500 Rh4BG021500 Rh4BG021600 Rh4BG021700 Rh4CG030500 Rh4CG030700 Rh4DG022100 Rh4DG022200 Rh4DG022300
rosa_wichuraiana	Rw4G002110 Rw4G002120 Rw4G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	543
Acc36I	ACCTGC	1 cut(s)	817
AccB1I	GGYRCC	1 cut(s)	797
AciI	CCGC	2 cut(s)	685, 990
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	1 cut(s)	959
AcoI	YGGCCR	2 cut(s)	117, 686
AcsI	RAATTY	2 cut(s)	60, 662
AcuI	CTGAAG	2 cut(s)	539, 621
AcvI	CACGTG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	524, 765
AflIII	ACRYGT	1 cut(s)	820
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	2 cut(s)	942, 974
AloI	GAACNNNNNNTCC	2 cut(s)	386, 418
AluBI	AGCT	6 cut(s)	168, 191, 352, 635, 1154, 1282
AluI	AGCT	6 cut(s)	168, 191, 352, 635, 1154, 1282
Alw21I	GWGCWC	1 cut(s)	1297
Alw26I	GTCTC	1 cut(s)	1256
AlwI	GGATC	1 cut(s)	959
AoxI	GGCC	2 cut(s)	117, 686
ApeKI	GCWGC	2 cut(s)	191, 194
ApoI	RAATTY	2 cut(s)	60, 662
AseI	ATTAAT	1 cut(s)	1350
Asp700I	GAANNNNTTC	2 cut(s)	915, 954
AspS9I	GGNCC	3 cut(s)	536, 653, 731
AsuHPI	GGTGA	1 cut(s)	1226
AvaII	GGWCC	3 cut(s)	536, 653, 731
BalI	TGGCCA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	797
BbrPI	CACGTG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	1297
BbvI	GCAGC	2 cut(s)	178, 206
BccI	CCATC	4 cut(s)	295, 675, 1114, 1276
BceAI	ACGGC	1 cut(s)	1148
BciT130I	CCWGG	1 cut(s)	735
BcoDI	GTCTC	1 cut(s)	1256
BfaI	CTAG	3 cut(s)	504, 650, 1052
BfmI	CTRYAG	2 cut(s)	192, 451
BfuAI	ACCTGC	1 cut(s)	817
BglII	AGATCT	2 cut(s)	447, 612
BisI	GCNGC	3 cut(s)	192, 195, 686
BlsI	GCNGC	3 cut(s)	193, 196, 687
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	3 cut(s)	536, 653, 731
BmgT120I	GGNCC	3 cut(s)	536, 653, 731
BmiI	GGNNCC	1 cut(s)	799
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	3 cut(s)	84, 250, 410
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	1140, 1403
Bsa29I	ATCGAT	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	734, 1164
Bse1I	ACTGG	3 cut(s)	18, 767, 1355
BseBI	CCWGG	1 cut(s)	735
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	734, 1164
BseGI	GGATG	3 cut(s)	401, 686, 1106
BseMII	CTCAG	3 cut(s)	155, 381, 554
BseNI	ACTGG	3 cut(s)	18, 767, 1355
BseXI	GCAGC	2 cut(s)	178, 206
BsgI	GTGCAG	2 cut(s)	845, 1064
Bsh1285I	CGRYCG	1 cut(s)	1437
BshFI	GGCC	2 cut(s)	119, 688
BshNI	GGYRCC	1 cut(s)	797
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	1437
BsiHKAI	GWGCWC	1 cut(s)	1297
BslFI	GGGAC	3 cut(s)	296, 658, 1363
BsmAI	GTCTC	1 cut(s)	1256
BsmFI	GGGAC	3 cut(s)	296, 658, 1363
BsmI	GAATGC	1 cut(s)	1210
BsnI	GGCC	2 cut(s)	119, 688
Bsp1286I	GDGCHC	1 cut(s)	1297
Bsp143I	GATC	6 cut(s)	76, 238, 447, 612, 964, 1434
BspACI	CCGC	2 cut(s)	685, 990
BspANI	GGCC	2 cut(s)	119, 688
BspCNI	CTCAG	3 cut(s)	156, 380, 553
BspDI	ATCGAT	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	799
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	817
BspPI	GGATC	1 cut(s)	959
BspQI	GCTCTTC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	797
BsrI	ACTGG	3 cut(s)	18, 767, 1355
BssECI	CCNNGG	2 cut(s)	734, 1164
BssMI	GATC	6 cut(s)	76, 238, 447, 612, 964, 1434
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	527, 1172
Bst6I	CTCTTC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	350, 1284
BstDEI	CTNAG	4 cut(s)	164, 297, 367, 540
BstDSI	CCRYGG	1 cut(s)	1164
BstF5I	GGATG	3 cut(s)	401, 686, 1106
BstKTI	GATC	6 cut(s)	79, 241, 450, 615, 967, 1437
BstMAI	GTCTC	1 cut(s)	1256
BstMBI	GATC	6 cut(s)	76, 238, 447, 612, 964, 1434
BstMCI	CGRYCG	1 cut(s)	1437
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 806, 1160, 1292
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	2 cut(s)	348, 824
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	2 cut(s)	192, 451
BstV1I	GCAGC	2 cut(s)	178, 206
BstX2I	RGATCY	3 cut(s)	447, 612, 964
BstYI	RGATCY	3 cut(s)	447, 612, 964
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	119, 688
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	1164
BtsCI	GGATG	3 cut(s)	401, 686, 1106
BtsIMutI	CAGTG	3 cut(s)	255, 548, 1177
BveI	ACCTGC	1 cut(s)	817
Cac8I	GCNNGC	2 cut(s)	350, 1284
Cfr13I	GGNCC	3 cut(s)	536, 653, 731
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	523, 764
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	2 cut(s)	345, 821
CviQI	GTAC	2 cut(s)	523, 764
DdeI	CTNAG	4 cut(s)	164, 297, 367, 540
DpnI	GATC	6 cut(s)	78, 240, 449, 614, 966, 1436
DpnII	GATC	6 cut(s)	76, 238, 447, 612, 964, 1434
DrdI	GACNNNNNNGTC	1 cut(s)	543
DseDI	GACNNNNNNGTC	1 cut(s)	543
EaeI	YGGCCR	2 cut(s)	117, 686
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	979
Eco32I	GATATC	1 cut(s)	1237
Eco47I	GGWCC	3 cut(s)	536, 653, 731
Eco57I	CTGAAG	2 cut(s)	539, 621
Eco72I	CACGTG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	536
EcoRI	GAATTC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	733
EcoRV	GATATC	1 cut(s)	1237
FaeI	CATG	2 cut(s)	348, 824
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	3 cut(s)	296, 658, 1363
FatI	CATG	2 cut(s)	344, 820
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	192, 195, 686
FokI	GGATG	3 cut(s)	388, 693, 1093
Fsp4HI	GCNGC	3 cut(s)	192, 195, 686
FspBI	CTAG	3 cut(s)	504, 650, 1052
GluI	GCNGC	3 cut(s)	192, 195, 686
HaeIII	GGCC	2 cut(s)	119, 688
Hin1II	CATG	2 cut(s)	348, 824
HincII	GTYRAC	3 cut(s)	253, 431, 1389
HindII	GTYRAC	3 cut(s)	253, 431, 1389
HindIII	AAGCTT	1 cut(s)	633
HinfI	GANTC	8 cut(s)	305, 438, 646, 1048, 1070, 1242, 1264, 1394
HphI	GGTGA	1 cut(s)	1226
Hpy166II	GTNNAC	8 cut(s)	46, 253, 431, 1069, 1168, 1175, 1275, 1389
Hpy188I	TCNGA	9 cut(s)	76, 640, 731, 760, 943, 1203, 1241, 1369, 1414
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	8 cut(s)	46, 253, 431, 1069, 1168, 1175, 1275, 1389
HpyAV	CCTTC	8 cut(s)	97, 1010, 1033, 1205, 1225, 1250, 1336, 1415
HpyCH4III	ACNGT	2 cut(s)	527, 1172
HpyCH4IV	ACGT	3 cut(s)	208, 396, 693
HpyCH4V	TGCA	8 cut(s)	97, 194, 401, 619, 826, 1023, 1045, 1208
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 806, 1160, 1292
HpyF3I	CTNAG	4 cut(s)	164, 297, 367, 540
HpySE526I	ACGT	3 cut(s)	208, 396, 693
Hsp92II	CATG	2 cut(s)	348, 824
Kzo9I	GATC	6 cut(s)	76, 238, 447, 612, 964, 1434
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	1279
Lsp1109I	GCAGC	2 cut(s)	178, 206
LweI	GCATC	3 cut(s)	84, 250, 410
MaeI	CTAG	3 cut(s)	504, 650, 1052
MaeII	ACGT	3 cut(s)	208, 396, 693
MaeIII	GTNAC	2 cut(s)	1054, 1147
MalI	GATC	6 cut(s)	78, 240, 449, 614, 966, 1436
MboI	GATC	6 cut(s)	76, 238, 447, 612, 964, 1434
MboII	GAAGA	9 cut(s)	56, 275, 482, 595, 665, 722, 916, 923, 995
MflI	RGATCY	3 cut(s)	447, 612, 964
MhlI	GDGCHC	1 cut(s)	1297
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	9 cut(s)	35, 60, 216, 407, 466, 530, 662, 721, 1076
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	5 cut(s)	432, 640, 1064, 1236, 1258
MmeI	TCCRAC	1 cut(s)	916
MnlI	CCTC	6 cut(s)	319, 544, 549, 1123, 1154, 1177
Mox20I	TGGCCA	1 cut(s)	119
MroXI	GAANNNNTTC	2 cut(s)	915, 954
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	5 cut(s)	129, 170, 465, 1350, 1400
MslI	CAYNNNNRTG	2 cut(s)	138, 600
Msp20I	TGGCCA	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	1210
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	4 cut(s)	203, 806, 1160, 1292
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	6 cut(s)	76, 238, 447, 612, 964, 1434
NlaIII	CATG	2 cut(s)	348, 824
NlaIV	GGNNCC	1 cut(s)	799
NspI	RCATGY	2 cut(s)	348, 824
PciI	ACATGT	1 cut(s)	820
PciSI	GCTCTTC	1 cut(s)	288
PctI	GAATGC	1 cut(s)	1210
PdmI	GAANNNNTTC	2 cut(s)	915, 954
PfeI	GAWTC	3 cut(s)	305, 1048, 1394
PkrI	GCNGC	3 cut(s)	193, 196, 687
Ple19I	CGATCG	1 cut(s)	1437
PleI	GAGTC	5 cut(s)	432, 640, 1064, 1236, 1258
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
PpsI	GAGTC	5 cut(s)	432, 640, 1064, 1236, 1258
Ppu21I	YACGTR	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	536
PscI	ACATGT	1 cut(s)	820
PshBI	ATTAAT	1 cut(s)	1350
Psp1406I	AACGTT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	733
PspCI	CACGTG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	799
PspPI	GGNCC	3 cut(s)	536, 653, 731
PspPPI	RGGWCCY	1 cut(s)	536
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	3 cut(s)	447, 612, 964
PvuI	CGATCG	1 cut(s)	1437
RsaI	GTAC	2 cut(s)	524, 765
RsaNI	GTAC	2 cut(s)	523, 764
RseI	CAYNNNNRTG	2 cut(s)	138, 600
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	5 cut(s)	129, 170, 465, 1350, 1400
SatI	GCNGC	3 cut(s)	192, 195, 686
Sau3AI	GATC	6 cut(s)	76, 238, 447, 612, 964, 1434
Sau96I	GGNCC	3 cut(s)	536, 653, 731
SchI	GAGTC	5 cut(s)	432, 640, 1064, 1236, 1258
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	1 cut(s)	1297
SfaNI	GCATC	3 cut(s)	84, 250, 410
SfcI	CTRYAG	2 cut(s)	192, 451
SinI	GGWCC	3 cut(s)	536, 653, 731
SmiMI	CAYNNNNRTG	2 cut(s)	138, 600
SmlI	CTYRAG	2 cut(s)	1155, 1382
SmoI	CTYRAG	2 cut(s)	1155, 1382
Sse9I	AATT	9 cut(s)	35, 60, 216, 407, 466, 530, 662, 721, 1076
SsiI	CCGC	2 cut(s)	685, 990
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	3 cut(s)	504, 650, 1052
StyD4I	CCNGG	1 cut(s)	733
TaaI	ACNGT	2 cut(s)	527, 1172
TaiI	ACGT	3 cut(s)	211, 399, 696
TaqI	TCGA	3 cut(s)	138, 472, 1073
TasI	AATT	9 cut(s)	35, 60, 216, 407, 466, 530, 662, 721, 1076
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	1 cut(s)	688
TfiI	GAWTC	3 cut(s)	305, 1048, 1394
Tru1I	TTAA	5 cut(s)	129, 170, 465, 1350, 1400
Tru9I	TTAA	5 cut(s)	129, 170, 465, 1350, 1400
TscAI	CASTG	3 cut(s)	262, 548, 1177
TseI	GCWGC	2 cut(s)	191, 194
TspDTI	ATGAA	6 cut(s)	198, 261, 869, 924, 1233, 1265
TspGWI	ACGGA	4 cut(s)	262, 298, 1292, 1318
TspRI	CASTG	3 cut(s)	262, 548, 1177
VpaK11BI	GGWCC	3 cut(s)	536, 653, 731
VspI	ATTAAT	1 cut(s)	1350
XapI	RAATTY	2 cut(s)	60, 662
XceI	RCATGY	2 cut(s)	348, 824
XmnI	GAANNNNTTC	2 cut(s)	915, 954
XspI	CTAG	3 cut(s)	504, 650, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.