Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001261

Physical Location & Seq

Genomic Coordinates Reverse (-)

31931713 .. 31952897

Gene Structure 21185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG284600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAGTAATTCCCAACTATCATCATCCTCTTTGTCTTCAAACGGAACAGATGATTATTATTATCGGGTCATGGCTTCATTTGATGAGGAGCAAGATTTATTGCTTCGCATGTATGCGAATAATAATCACCTCTTGGCAGAGTTGGATGACAATGAGGACGACGAGGCCGAATCGAGGCGTAGAGGAGCAGTTCCTGGCCATATAGTTATTAATCGTCCTCGACAAGAAGCTGGATATAATCTATACATGGACTACTTTGCTGAGAACCCATCACCACCGTCCGATTCTCCGACCATCCGGCCACCCCCTCTGCTGCAACAGCCGATCACTACTCCCTACCGCTTCCACCCACTTCGCCAAGCGCTTCTCCTCCCTCTCCCCGCACGTTGTCGCCACTCCGTTAACCCCCTCGCCGTCAGCAAACTTGAGAAAAACGTTGCCACGTACTTCATAGTGCTCCTGGTAGCATGTGTCTCATTTGTTATCACTGGTGGTTTCCTATATTTCAAGTTTAGGGATAGTAAAGAATCTTTGGAGGACTGCTTCTGGGAAGCTTGGGCATGCCTATGTTCACCTCACACACATCTAAAGCAAAGAACACGTATTGAACGTGTTATTGGTTTTGTTCTTGCTATATGGGGCATATTATTTTACTCCCGCTTATTGAGCACAATGACTGAACAGTTCCGGAGTAATATGTACAAGCTCAGAGAAGGGGCACAATTGCAAGTTCTGGAGACTGATCACATCATTATTTGTGGAGTGAACAGTCATCTTCCTTTCATACTAAAGCAAATAAATAAGTATCATGAAGTTGCTGTCCGCTTAGATACTGCCACAGTTAGAAAATGTGTCAATCTTTGCAATTCTCCCAGGCTAGCAGGGCTGAAGTATAGTCAATTAGGACCTGGGTTTCAAAAGGCAGTTGTTTGTGGGCTTTATAGAAATGGGAAGATATACTTCCACCCAAATGATGATGAGATCTTGCAGGAAACTGACAAAGTAAGTGGAGCTGTGGACACAATTTGCTCTCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

346

Amino Acids

39.38

Weight (kDa)

6.79

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Castor_Poll_mid	PF06241	284 - 335	2.9e-14	Castor and Pollux, part of voltage-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02940 AT5G02940 AT5G43745
fragaria_vesca	FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230
malus_domestica	MD11G1069300.v1.1 MD13G1204000.v1.1 MD16G1206000.v1.1
prunus_persica	Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1
pyrus_communis	pycom11g05780 pycom13g17720
rosa_chinensis	RchiOBHm_Chr4g0389551 RchiOBHm_Chr4g0389561 RchiOBHm_Chr4g0389571 RchiOBHm_Chr4g0389581
rosa_laevigata	RLG00000009970 RLG00000009971 RLG00000009972
rosa_multiflora	Rmu_co8238337.1_g000001 Rmu_co8398985.1_g000001 Rmu_sc0010540.1_g000001 Rmu_ssc0000478.1_g000001 Rmu_ssc0000478.1_g000002 Rmu_ssc0000478.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335510 Rroxscaffold_5G00335520 Rroxscaffold_5G00335530
rosa_rugosa	Rorug03G0324000
rosa_samantha	Rh2BG306500 Rh2CG284600 Rh4AG028300 Rh4AG028400 Rh4AG028500 Rh4BG021500 Rh4BG021600 Rh4BG021700 Rh4CG030500 Rh4CG030700 Rh4DG022100 Rh4DG022200 Rh4DG022300
rosa_wichuraiana	Rw4G002110 Rw4G002120 Rw4G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	687
AciI	CCGC	4 cut(s)	340, 381, 658, 823
AclI	AACGTT	1 cut(s)	435
AcoI	YGGCCR	2 cut(s)	196, 299
AcuI	CTGAAG	1 cut(s)	908
AfaI	GTAC	2 cut(s)	446, 701
AfeI	AGCGCT	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	174
AflIII	ACRYGT	2 cut(s)	599, 610
AgsI	TTSAA	4 cut(s)	39, 508, 608, 917
AjnI	CCWGG	4 cut(s)	193, 459, 872, 907
AjuI	GAANNNNNNNTTGG	2 cut(s)	600, 632
AluBI	AGCT	4 cut(s)	230, 554, 706, 1013
AluI	AGCT	4 cut(s)	230, 554, 706, 1013
Alw21I	GWGCWC	2 cut(s)	459, 671
Alw26I	GTCTC	2 cut(s)	478, 731
AlwNI	CAGNNNCTG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	687
Aor51HI	AGCGCT	1 cut(s)	363
AoxI	GGCC	3 cut(s)	165, 196, 299
ApeKI	GCWGC	1 cut(s)	313
AseI	ATTAAT	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	905
AsuHPI	GGTGA	3 cut(s)	119, 264, 564
AsuNHI	GCTAGC	1 cut(s)	877
AvaII	GGWCC	1 cut(s)	905
BaeGI	GKGCMC	1 cut(s)	721
BalI	TGGCCA	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	459, 671
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	277, 302
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	4 cut(s)	195, 461, 874, 909
BclI	TGATCA	1 cut(s)	742
BcoDI	GTCTC	2 cut(s)	478, 731
BfaI	CTAG	1 cut(s)	878
BfoI	RGCGCY	1 cut(s)	365
BglII	AGATCT	1 cut(s)	981
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	4 cut(s)	195, 461, 874, 909
Bme18I	GGWCC	1 cut(s)	905
BmgT120I	GGNCC	1 cut(s)	905
BmrFI	CCNGG	4 cut(s)	195, 461, 874, 909
BmtI	GCTAGC	1 cut(s)	881
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	446
BsaAI	YACGTR	2 cut(s)	444, 602
BsaJI	CCNNGG	2 cut(s)	872, 908
BsaWI	WCCGGW	1 cut(s)	687
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	493
BseAI	TCCGGA	1 cut(s)	687
BseBI	CCWGG	4 cut(s)	195, 461, 874, 909
BseDI	CCNNGG	2 cut(s)	872, 908
BseGI	GGATG	3 cut(s)	23, 151, 294
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	252, 721
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	3 cut(s)	101, 198, 359
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	1 cut(s)	300
BshFI	GGCC	3 cut(s)	167, 198, 301
BsiHKAI	GWGCWC	2 cut(s)	459, 671
BsiSI	CCGG	2 cut(s)	298, 688
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	478, 731
BsnI	GGCC	3 cut(s)	167, 198, 301
Bsp1286I	GDGCHC	3 cut(s)	459, 671, 721
Bsp13I	TCCGGA	1 cut(s)	687
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	3 cut(s)	324, 742, 981
BspACI	CCGC	4 cut(s)	340, 381, 658, 823
BspANI	GGCC	3 cut(s)	167, 198, 301
BspCNI	CTCAG	2 cut(s)	253, 720
BspEI	TCCGGA	1 cut(s)	687
BspHI	TCATGA	1 cut(s)	808
BspOI	GCTAGC	1 cut(s)	881
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	872, 908
BssMI	GATC	3 cut(s)	324, 742, 981
Bst2UI	CCWGG	4 cut(s)	195, 461, 874, 909
Bst4CI	ACNGT	4 cut(s)	279, 684, 770, 841
BstAUI	TGTACA	1 cut(s)	699
BstBAI	YACGTR	2 cut(s)	444, 602
BstC8I	GCNNGC	2 cut(s)	562, 879
BstDEI	CTNAG	3 cut(s)	261, 707, 826
BstF5I	GGATG	3 cut(s)	23, 151, 294
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	3 cut(s)	327, 745, 984
BstMAI	GTCTC	2 cut(s)	478, 731
BstMBI	GATC	3 cut(s)	324, 742, 981
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 666, 883
BstNI	CCWGG	4 cut(s)	195, 461, 874, 909
BstNSI	RCATGY	3 cut(s)	112, 471, 564
BstSCI	CCNGG	4 cut(s)	193, 459, 872, 907
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	981
BstYI	RGATCY	1 cut(s)	981
BsuRI	GGCC	3 cut(s)	167, 198, 301
BtsCI	GGATG	3 cut(s)	23, 151, 294
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	2 cut(s)	562, 879
CaiI	CAGNNNCTG	1 cut(s)	194
CciI	TCATGA	1 cut(s)	808
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	905
Csp6I	GTAC	2 cut(s)	445, 700
CspCI	CAANNNNNGTGG	2 cut(s)	988, 1023
CviAII	CATG	6 cut(s)	70, 109, 247, 468, 561, 809
CviQI	GTAC	2 cut(s)	445, 700
DdeI	CTNAG	3 cut(s)	261, 707, 826
DpnI	GATC	3 cut(s)	326, 744, 983
DpnII	GATC	3 cut(s)	324, 742, 981
EaeI	YGGCCR	2 cut(s)	196, 299
Eco47I	GGWCC	1 cut(s)	905
Eco47III	AGCGCT	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	908
EcoO109I	RGGNCCY	1 cut(s)	905
EcoRII	CCWGG	4 cut(s)	193, 459, 872, 907
FaeI	CATG	6 cut(s)	73, 112, 250, 471, 564, 812
FalI	AAGNNNNNCTT	2 cut(s)	944, 976
FatI	CATG	6 cut(s)	69, 108, 246, 467, 560, 808
FauI	CCCGC	2 cut(s)	388, 665
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	3 cut(s)	10, 158, 281
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	1 cut(s)	878
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	755
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	3 cut(s)	167, 198, 301
HapII	CCGG	2 cut(s)	298, 688
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	6 cut(s)	73, 112, 250, 471, 564, 812
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	3 cut(s)	170, 284, 527
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	298, 688
HphI	GGTGA	3 cut(s)	119, 264, 564
Hpy166II	GTNNAC	4 cut(s)	403, 572, 766, 1018
Hpy188I	TCNGA	3 cut(s)	283, 291, 710
Hpy188III	TCNNGA	3 cut(s)	688, 734, 809
Hpy8I	GTNNAC	4 cut(s)	403, 572, 766, 1018
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	707
HpyCH4III	ACNGT	4 cut(s)	279, 684, 770, 841
HpyCH4IV	ACGT	5 cut(s)	385, 435, 443, 601, 610
HpyCH4V	TGCA	4 cut(s)	316, 727, 864, 988
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 666, 883
HpyF3I	CTNAG	3 cut(s)	261, 707, 826
HpySE526I	ACGT	5 cut(s)	385, 435, 443, 601, 610
Hsp92II	CATG	6 cut(s)	73, 112, 250, 471, 564, 812
HspAI	GCGC	1 cut(s)	362
Kpn2I	TCCGGA	1 cut(s)	687
Ksp22I	TGATCA	1 cut(s)	742
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	324, 742, 981
LmnI	GCTCC	4 cut(s)	88, 185, 462, 1010
Lsp1109I	GCAGC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	878
MaeII	ACGT	5 cut(s)	385, 435, 443, 601, 610
MalI	GATC	3 cut(s)	326, 744, 983
MboI	GATC	3 cut(s)	324, 742, 981
MboII	GAAGA	3 cut(s)	27, 767, 964
MfeI	CAATTG	1 cut(s)	722
MflI	RGATCY	1 cut(s)	981
MhlI	GDGCHC	3 cut(s)	459, 671, 721
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	5 cut(s)	7, 722, 865, 899, 1023
MluNI	TGGCCA	1 cut(s)	198
MmeI	TCCRAC	2 cut(s)	123, 314
Mox20I	TGGCCA	1 cut(s)	198
MroI	TCCGGA	1 cut(s)	687
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	2 cut(s)	210, 402
MslI	CAYNNNNRTG	2 cut(s)	565, 969
Msp20I	TGGCCA	1 cut(s)	198
MspI	CCGG	2 cut(s)	298, 688
MspR9I	CCNGG	4 cut(s)	195, 461, 874, 909
MunI	CAATTG	1 cut(s)	722
MvaI	CCWGG	4 cut(s)	195, 461, 874, 909
MwoI	GCNNNNNNNGC	3 cut(s)	319, 666, 883
NdeII	GATC	3 cut(s)	324, 742, 981
NheI	GCTAGC	1 cut(s)	877
NlaIII	CATG	6 cut(s)	73, 112, 250, 471, 564, 812
NspI	RCATGY	3 cut(s)	112, 471, 564
PaeI	GCATGC	1 cut(s)	564
PagI	TCATGA	1 cut(s)	808
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 607
PfeI	GAWTC	3 cut(s)	170, 284, 527
PkrI	GCNGC	1 cut(s)	315
Ppu21I	YACGTR	2 cut(s)	444, 602
PpuMI	RGGWCCY	1 cut(s)	905
PshBI	ATTAAT	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	905
Psp6I	CCWGG	4 cut(s)	193, 459, 872, 907
PspGI	CCWGG	4 cut(s)	193, 459, 872, 907
PspPI	GGNCC	1 cut(s)	905
PspPPI	RGGWCCY	1 cut(s)	905
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	981
RsaI	GTAC	2 cut(s)	446, 701
RsaNI	GTAC	2 cut(s)	445, 700
RseI	CAYNNNNRTG	2 cut(s)	565, 969
SaqAI	TTAA	2 cut(s)	210, 402
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	3 cut(s)	324, 742, 981
Sau96I	GGNCC	1 cut(s)	905
ScrFI	CCNGG	4 cut(s)	195, 461, 874, 909
SduI	GDGCHC	3 cut(s)	459, 671, 721
SinI	GGWCC	1 cut(s)	905
SmiMI	CAYNNNNRTG	2 cut(s)	565, 969
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	564
Sse9I	AATT	5 cut(s)	7, 722, 865, 899, 1023
SsiI	CCGC	4 cut(s)	340, 381, 658, 823
SspMI	CTAG	1 cut(s)	878
StyD4I	CCNGG	4 cut(s)	193, 459, 872, 907
TaaI	ACNGT	4 cut(s)	279, 684, 770, 841
TaiI	ACGT	5 cut(s)	388, 438, 446, 604, 613
TaqI	TCGA	2 cut(s)	173, 220
TasI	AATT	5 cut(s)	7, 722, 865, 899, 1023
TatI	WGTACW	1 cut(s)	699
TfiI	GAWTC	3 cut(s)	170, 284, 527
Tru1I	TTAA	2 cut(s)	210, 402
Tru9I	TTAA	2 cut(s)	210, 402
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	5 cut(s)	66, 439, 772, 825, 1026
TspGWI	ACGGA	2 cut(s)	57, 388
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	905
VspI	ATTAAT	1 cut(s)	210
XceI	RCATGY	3 cut(s)	112, 471, 564
XspI	CTAG	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.