Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001261

Physical Location & Seq

Genomic Coordinates Forward (+)

4444140 .. 4445795

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGATTGCTGTCCTTATATTTCTCAATTAGGCTAGGACAATCAAATGTTTTTCATACTTTCATTAAGATCGCCCAAGCAAAACTTCCCTCTATCATTCAAACTTTCGGGGCTGCCACCTTGCCCTTTTCCTTTATTTCTAATTCATTGAATAAACCTGTGCCTCTTCAGTTGGATGTGTCTGTTCCTTCATTTCGAGACATTAGATGGAGCTTTGCACTGTTACTGTATCTATTTAACATCCAACTTGAAAAGAATGTTGCCACGTTCTTTCTGGTGCTCCTGGTAGCATGCTTCTCATTTGTTGTCATTGGTGGTTTCCTATTCTACAAGTATAGGGGTAGTAATGAGTCTTTGGGGGACTGCTTCTGGGAGGTTTGGGCATGTCTGTGTTCATCATCAACACATTTAAAACAAAGAAGACGCATTGGACGTGTTATTGGTTTTGTTCTTGCAATATGGGGCAAATTATTTTACTCTCGCTTGTTGAGCACAATGAACGAACAGTTCAGGACTAAAAGAAGGCGCACAAATGCAAGTTCTGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

184

Amino Acids

20.92

Weight (kDa)

10.21

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02940 AT5G02940 AT5G43745
fragaria_vesca	FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230
malus_domestica	MD11G1069300.v1.1 MD13G1204000.v1.1 MD16G1206000.v1.1
prunus_persica	Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1
pyrus_communis	pycom11g05780 pycom13g17720
rosa_chinensis	RchiOBHm_Chr4g0389551 RchiOBHm_Chr4g0389561 RchiOBHm_Chr4g0389571 RchiOBHm_Chr4g0389581
rosa_laevigata	RLG00000009970 RLG00000009971 RLG00000009972
rosa_multiflora	Rmu_co8238337.1_g000001 Rmu_co8398985.1_g000001 Rmu_sc0010540.1_g000001 Rmu_ssc0000478.1_g000001 Rmu_ssc0000478.1_g000002 Rmu_ssc0000478.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335510 Rroxscaffold_5G00335520 Rroxscaffold_5G00335530
rosa_rugosa	Rorug03G0324000
rosa_samantha	Rh2BG306500 Rh2CG284600 Rh4AG028300 Rh4AG028400 Rh4AG028500 Rh4BG021500 Rh4BG021600 Rh4BG021700 Rh4CG030500 Rh4CG030700 Rh4DG022100 Rh4DG022200 Rh4DG022300
rosa_wichuraiana	Rw4G002110 Rw4G002120 Rw4G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	3 cut(s)	101, 151, 251
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw21I	GWGCWC	2 cut(s)	282, 494
Alw26I	GTCTC	2 cut(s)	192, 540
ApeKI	GCWGC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	2 cut(s)	282, 494
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	284
BcoDI	GTCTC	2 cut(s)	192, 540
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	181, 240
BseXI	GCAGC	1 cut(s)	100
BsiHKAI	GWGCWC	2 cut(s)	282, 494
BslFI	GGGAC	1 cut(s)	374
BsmAI	GTCTC	2 cut(s)	192, 540
BsmFI	GGGAC	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	282, 494
Bsp143I	GATC	1 cut(s)	69
BssMI	GATC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	222, 228, 507
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	181, 240
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	2 cut(s)	192, 540
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	2 cut(s)	294, 387
BstSCI	CCNGG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	427
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	181, 240
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	528
CseI	GACGC	1 cut(s)	432
CviAII	CATG	2 cut(s)	291, 384
CviJI	RGCY	3 cut(s)	34, 113, 213
CviKI_1	RGCY	3 cut(s)	34, 113, 213
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DraI	TTTAAA	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	294, 387
FaiI	YATR	6 cut(s)	19, 57, 292, 336, 385, 460
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	2 cut(s)	290, 383
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	2 cut(s)	188, 227
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	1 cut(s)	114
HgaI	GACGC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	2 cut(s)	294, 387
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HinfI	GANTC	1 cut(s)	350
Hpy188III	TCNNGA	3 cut(s)	197, 511, 543
HpyAV	CCTTC	2 cut(s)	198, 516
HpyCH4III	ACNGT	3 cut(s)	222, 228, 507
HpyCH4IV	ACGT	2 cut(s)	266, 433
HpyCH4V	TGCA	3 cut(s)	218, 455, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpySE526I	ACGT	2 cut(s)	266, 433
Hsp92II	CATG	2 cut(s)	294, 387
HspAI	GCGC	1 cut(s)	526
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	210, 285
LpnPI	CCDG	7 cut(s)	171, 260, 269, 296, 355, 496, 528
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	266, 433
MaeIII	GTNAC	1 cut(s)	222
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	2 cut(s)	158, 432
MhlI	GDGCHC	2 cut(s)	282, 494
MluCI	AATT	3 cut(s)	27, 142, 467
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	153, 268
MnlI	CCTC	3 cut(s)	100, 174, 367
MseI	TTAA	3 cut(s)	66, 237, 410
MslI	CAYNNNNRTG	1 cut(s)	388
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	489
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	294, 387
NspI	RCATGY	2 cut(s)	294, 387
PaeI	GCATGC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	430
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	388
SaqAI	TTAA	3 cut(s)	66, 237, 410
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	282, 494
SetI	ASST	6 cut(s)	122, 160, 215, 269, 378, 436
SmiMI	CAYNNNNRTG	1 cut(s)	388
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	3 cut(s)	27, 142, 467
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	222, 228, 507
TaiI	ACGT	2 cut(s)	269, 436
TaqI	TCGA	1 cut(s)	196
TasI	AATT	3 cut(s)	27, 142, 467
Tru1I	TTAA	3 cut(s)	66, 237, 410
Tru9I	TTAA	3 cut(s)	66, 237, 410
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	6 cut(s)	44, 52, 135, 180, 384, 512
TspRI	CASTG	1 cut(s)	225
XceI	RCATGY	2 cut(s)	294, 387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.