Rmu_co8238337.1_g000001

ion channel POLLUX-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8238337.1
Physical Location & Seq
Forward (+)
1 .. 659
659 bp
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UTR
Exon/CDS
Intron
Rmu_co8238337.1_g000001.1.cds

Sequence Viewer

Length: 304 bp
gcaatccgcctattcccttcttcttgctgaaaatatttgcaacaaacttggcgtaaaggtgcagaatctagttgcggaaatcgtggactcgaaattggggaaacaaatcacaagaataaagccatccctcacttatattgccgcggaggaagtaatgagcctcgtaacagctcaagttgctgaggacagtgagctaaatgaggtgtggaaagacattctggatgcagacggtgatgaaatatatgtgaaggtaaacttccttaagttttcaattgtatacatattttacctcaagtggaaataa

Protein Analysis

100

Amino Acids

11.34

Weight (kDa)

4.88

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 277
AccII CGCG 1 cut(s) 144
AciI CCGC 4 cut(s) 7, 75, 142, 144
AflII CTTAAG 1 cut(s) 261
AgsI TTSAA 1 cut(s) 271
AluBI AGCT 2 cut(s) 171, 194
AluI AGCT 2 cut(s) 171, 194
AsuHPI GGTGA 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 131
BfaI CTAG 1 cut(s) 69
BfrI CTTAAG 1 cut(s) 261
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
BmsI GCATC 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 181
BpuEI CTTGAG 2 cut(s) 157, 276
BsaJI CCNNGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 2 cut(s) 123, 227
BseMII CTCAG 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 144
BspACI CCGC 4 cut(s) 7, 75, 142, 144
BspCNI CTCAG 1 cut(s) 173
BspFNI CGCG 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 142
BssNAI GTATAC 1 cut(s) 278
Bst1107I GTATAC 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 189, 231
BstAFI CTTAAG 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 2 cut(s) 123, 227
BstFNI CGCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstUI CGCG 1 cut(s) 144
BstZ17I GTATAC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 2 cut(s) 123, 227
BtsIMutI CAGTG 1 cut(s) 194
Cfr42I CCGCGG 1 cut(s) 145
CviJI RGCY 4 cut(s) 122, 160, 171, 194
CviKI_1 RGCY 4 cut(s) 122, 160, 171, 194
DdeI CTNAG 1 cut(s) 181
FaiI YATR 5 cut(s) 136, 242, 244, 278, 282
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FblI GTMKAC 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 2 cut(s) 110, 234
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 142
HinfI GANTC 2 cut(s) 65, 87
HphI GGTGA 1 cut(s) 243
Hpy166II GTNNAC 3 cut(s) 86, 254, 278
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 3 cut(s) 86, 254, 278
HpyAV CCTTC 2 cut(s) 27, 242
HpyCH4III ACNGT 2 cut(s) 189, 231
HpyCH4V TGCA 3 cut(s) 40, 62, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 181
KspI CCGCGG 1 cut(s) 145
LpnPI CCDG 1 cut(s) 204
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 164
MboII GAAGA 1 cut(s) 12
MfeI CAATTG 1 cut(s) 271
MluCI AATT 2 cut(s) 93, 271
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 6 cut(s) 138, 140, 171, 176, 194, 300
MseI TTAA 1 cut(s) 262
MspA1I CMGCKG 1 cut(s) 144
MspCI CTTAAG 1 cut(s) 261
MunI CAATTG 1 cut(s) 271
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
SacII CCGCGG 1 cut(s) 145
SaqAI TTAA 1 cut(s) 262
SatI GCNGC 1 cut(s) 142
SchI GAGTC 1 cut(s) 81
SetI ASST 6 cut(s) 61, 173, 196, 205, 253, 292
SfaNI GCATC 1 cut(s) 212
Sfr303I CCGCGG 1 cut(s) 145
SgrBI CCGCGG 1 cut(s) 145
SmlI CTYRAG 3 cut(s) 172, 261, 291
SmoI CTYRAG 3 cut(s) 172, 261, 291
Sse9I AATT 2 cut(s) 93, 271
SsiI CCGC 4 cut(s) 7, 75, 142, 144
SspI AATATT 1 cut(s) 35
SspMI CTAG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 189, 231
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 93, 271
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 262
Tru9I TTAA 1 cut(s) 262
TscAI CASTG 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 1 cut(s) 194
Vha464I CTTAAG 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 277
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.