Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001261

Physical Location & Seq

Genomic Coordinates Reverse (-)

35664490 .. 35675340

Gene Structure 10851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG306500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGTGAAGAGAGGGTCATTTTTCGTCCAGTGCGGTAGCCAGGAATGGCCATACGGTGGAGAACCTACCAGACCCGAGTTTCAGGGCAGGTACTTCATAGTGCTCCTGGTAGCATGTGTCTCATTTGTTATCACTGGTGGTTTCCTATATTTCAAGTTTAGGGATAGTAAAGAATCTTTGGAGGACTGCTTCTGGGAAGCTTGGGCATGCCTATGTTCACCTCACACACATCTAAAGCAAAGAACACGTATTGAACGTGTTATTGGTTTTGTTCTTGCTATATGGGGCATATTATTTTACTCCCGCTTATTGAGCACAATGACTGAACAGTTCCGGAGTAATATGTACAAGCTCAGAGAAGGGGCACAATTGCAAGTTCTGGAGACTGATCACATCATTATTTGTGGAGTGAACAGTCATCTTCCTTTCATACTAAAGCAAATAAATAAGTATCATGAAGTTGCTGTCCGCTTAGATACTGCCACAGTTAGGCAGCAAAGAATTCTTCTTATGTCTGATCTACCAAGAGAGCAGATGCACAAAAAAGTTGACGATATTGCCAAAGATTTTAACCATATCGATATCCTTACAAAAAGTTATAAAGTTGACACTGATGCCTTTCTATCCGTTCTGGCTCTTCAACCTATTCCTAAGATGGAATCCGTCCCCACTATTGTTGAGGTTTCAAGTTCAAAGACATGCGAGCTTTTGAAGTCAATCTCAGGGTTGAAAGTAGAGCCTGTGGAGAACGTTGCATTTATGAGATGGAACACTAATTCATATCATTTCTATTCCTGCAGAAAATGTGTCAATCTTTGCAATTCTCCCAGGCTAGCAGGGCTGAAGTATAGTCAATTAGGACCTGGGTTTCAAAAGGCAGTTGTTTGTGGGCTTTATAGAAATGGGAAGATATACTTCCACCCAAATGATGATGAGATCTTGCAGGAAACTGACAAAGTAAGTGGAGCTGTGGACACAATTTGCTCTCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

331

Amino Acids

37.91

Weight (kDa)

8.52

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Castor_Poll_mid	PF06241	269 - 320	2.8e-14	Castor and Pollux, part of voltage-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02940 AT5G02940 AT5G43745
fragaria_vesca	FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230 FvH4_4g02230
malus_domestica	MD11G1069300.v1.1 MD13G1204000.v1.1 MD16G1206000.v1.1
prunus_persica	Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1 Prupe.1G027100_v2.0.a1
pyrus_communis	pycom11g05780 pycom13g17720
rosa_chinensis	RchiOBHm_Chr4g0389551 RchiOBHm_Chr4g0389561 RchiOBHm_Chr4g0389571 RchiOBHm_Chr4g0389581
rosa_laevigata	RLG00000009970 RLG00000009971 RLG00000009972
rosa_multiflora	Rmu_co8238337.1_g000001 Rmu_co8398985.1_g000001 Rmu_sc0010540.1_g000001 Rmu_ssc0000478.1_g000001 Rmu_ssc0000478.1_g000002 Rmu_ssc0000478.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335510 Rroxscaffold_5G00335520 Rroxscaffold_5G00335530
rosa_rugosa	Rorug03G0324000
rosa_samantha	Rh2BG306500 Rh2CG284600 Rh4AG028300 Rh4AG028400 Rh4AG028500 Rh4BG021500 Rh4BG021600 Rh4BG021700 Rh4CG030500 Rh4CG030700 Rh4DG022100 Rh4DG022200 Rh4DG022300
rosa_wichuraiana	Rw4G002110 Rw4G002120 Rw4G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
Acc36I	ACCTGC	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	3 cut(s)	33, 304, 469
AclI	AACGTT	1 cut(s)	750
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	863
AfaI	GTAC	2 cut(s)	92, 347
AfiI	CCNNNNNNNGG	2 cut(s)	56, 489
AflIII	ACRYGT	2 cut(s)	245, 256
AgsI	TTSAA	8 cut(s)	154, 254, 641, 687, 693, 712, 730, 872
AjnI	CCWGG	4 cut(s)	39, 105, 827, 862
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	200, 352, 706, 968
AluI	AGCT	4 cut(s)	200, 352, 706, 968
Alw21I	GWGCWC	2 cut(s)	105, 317
Alw26I	GTCTC	2 cut(s)	124, 377
Ama87I	CYCGRG	1 cut(s)	74
Aor13HI	TCCGGA	1 cut(s)	333
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	860
AsuHPI	GGTGA	2 cut(s)	16, 210
AsuNHI	GCTAGC	1 cut(s)	832
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	860
BaeGI	GKGCMC	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	49
Bbv12I	GWGCWC	2 cut(s)	105, 317
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	2 cut(s)	649, 759
BciT130I	CCWGG	4 cut(s)	41, 107, 829, 864
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	124, 377
BfaI	CTAG	1 cut(s)	833
BfmI	CTRYAG	1 cut(s)	796
BfuAI	ACCTGC	1 cut(s)	78
BglII	AGATCT	1 cut(s)	936
BisI	GCNGC	1 cut(s)	494
BlsI	GCNGC	1 cut(s)	495
Bme1390I	CCNGG	4 cut(s)	41, 107, 829, 864
Bme18I	GGWCC	1 cut(s)	860
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	860
BmrFI	CCNGG	4 cut(s)	41, 107, 829, 864
BmsI	GCATC	2 cut(s)	525, 604
BmtI	GCTAGC	1 cut(s)	836
BpmI	CTGGAG	1 cut(s)	401
Bsa29I	ATCGAT	1 cut(s)	579
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	827, 863
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 489
Bse1I	ACTGG	2 cut(s)	28, 139
BseAI	TCCGGA	1 cut(s)	333
BseBI	CCWGG	4 cut(s)	41, 107, 829, 864
BseCI	ATCGAT	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	827, 863
BseLI	CCNNNNNNNGG	2 cut(s)	56, 489
BseMII	CTCAG	2 cut(s)	367, 735
BseNI	ACTGG	2 cut(s)	28, 139
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	505
BshFI	GGCC	1 cut(s)	49
BshVI	ATCGAT	1 cut(s)	579
BsiHKAI	GWGCWC	2 cut(s)	105, 317
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	2 cut(s)	56, 489
BsmAI	GTCTC	2 cut(s)	124, 377
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	3 cut(s)	105, 317, 367
Bsp13I	TCCGGA	1 cut(s)	333
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	388, 517, 936
BspACI	CCGC	3 cut(s)	33, 304, 469
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	366, 734
BspDI	ATCGAT	1 cut(s)	579
BspEI	TCCGGA	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	454
BspMAI	CTGCAG	1 cut(s)	800
BspMI	ACCTGC	1 cut(s)	78
BspOI	GCTAGC	1 cut(s)	836
BspQI	GCTCTTC	1 cut(s)	642
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	28, 139
BssECI	CCNNGG	2 cut(s)	827, 863
BssMI	GATC	3 cut(s)	388, 517, 936
Bst2UI	CCWGG	4 cut(s)	41, 107, 829, 864
Bst4CI	ACNGT	4 cut(s)	56, 330, 416, 487
Bst6I	CTCTTC	2 cut(s)	2, 642
BstAUI	TGTACA	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	208, 704, 834
BstDEI	CTNAG	4 cut(s)	353, 472, 651, 721
BstKTI	GATC	3 cut(s)	391, 520, 939
BstMAI	GTCTC	2 cut(s)	124, 377
BstMBI	GATC	3 cut(s)	388, 517, 936
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 838
BstNI	CCWGG	4 cut(s)	41, 107, 829, 864
BstNSI	RCATGY	3 cut(s)	117, 210, 702
BstSCI	CCNGG	4 cut(s)	39, 105, 827, 862
BstSFI	CTRYAG	1 cut(s)	796
BstSLI	GKGCMC	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	936
BstYI	RGATCY	1 cut(s)	936
Bsu15I	ATCGAT	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	49
BsuTUI	ATCGAT	1 cut(s)	579
BtsIMutI	CAGTG	3 cut(s)	35, 132, 609
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	208, 704, 834
CciI	TCATGA	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	860
ClaI	ATCGAT	1 cut(s)	579
Csp6I	GTAC	2 cut(s)	91, 346
CspCI	CAANNNNNGTGG	4 cut(s)	658, 693, 943, 978
CviAII	CATG	4 cut(s)	114, 207, 455, 699
CviQI	GTAC	2 cut(s)	91, 346
DdeI	CTNAG	4 cut(s)	353, 472, 651, 721
DpnI	GATC	3 cut(s)	390, 519, 938
DpnII	GATC	3 cut(s)	388, 517, 936
EaeI	YGGCCR	1 cut(s)	47
Eam1104I	CTCTTC	2 cut(s)	2, 642
EarI	CTCTTC	2 cut(s)	2, 642
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	860
Eco57I	CTGAAG	1 cut(s)	863
Eco88I	CYCGRG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRI	GAATTC	1 cut(s)	501
EcoRII	CCWGG	4 cut(s)	39, 105, 827, 862
EcoRV	GATATC	1 cut(s)	583
FaeI	CATG	4 cut(s)	117, 210, 458, 702
FalI	AAGNNNNNCTT	2 cut(s)	899, 931
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	4 cut(s)	113, 206, 454, 698
FauI	CCCGC	1 cut(s)	311
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	494
Fsp4HI	GCNGC	1 cut(s)	494
FspBI	CTAG	1 cut(s)	833
GluI	GCNGC	1 cut(s)	494
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	4 cut(s)	117, 210, 458, 702
HincII	GTYRAC	2 cut(s)	550, 607
HindII	GTYRAC	2 cut(s)	550, 607
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	2 cut(s)	173, 659
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	2 cut(s)	16, 210
Hpy166II	GTNNAC	5 cut(s)	218, 412, 550, 607, 973
Hpy188I	TCNGA	2 cut(s)	356, 517
Hpy188III	TCNNGA	3 cut(s)	334, 380, 455
Hpy8I	GTNNAC	5 cut(s)	218, 412, 550, 607, 973
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	4 cut(s)	56, 330, 416, 487
HpyCH4IV	ACGT	3 cut(s)	247, 256, 750
HpyCH4V	TGCA	6 cut(s)	373, 538, 755, 798, 819, 943
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 838
HpyF3I	CTNAG	4 cut(s)	353, 472, 651, 721
HpySE526I	ACGT	3 cut(s)	247, 256, 750
Hsp92II	CATG	4 cut(s)	117, 210, 458, 702
Kpn2I	TCCGGA	1 cut(s)	333
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	388, 517, 936
LguI	GCTCTTC	1 cut(s)	642
LmnI	GCTCC	2 cut(s)	108, 965
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	2 cut(s)	525, 604
MaeI	CTAG	1 cut(s)	833
MaeII	ACGT	3 cut(s)	247, 256, 750
MalI	GATC	3 cut(s)	390, 519, 938
MboI	GATC	3 cut(s)	388, 517, 936
MboII	GAAGA	5 cut(s)	19, 413, 497, 629, 919
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	1 cut(s)	936
MhlI	GDGCHC	3 cut(s)	105, 317, 367
MlsI	TGGCCA	1 cut(s)	49
MluCI	AATT	6 cut(s)	368, 501, 775, 820, 854, 978
MluNI	TGGCCA	1 cut(s)	49
MnlI	CCTC	4 cut(s)	5, 175, 231, 673
Mox20I	TGGCCA	1 cut(s)	49
MroI	TCCGGA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	49
MseI	TTAA	1 cut(s)	570
MslI	CAYNNNNRTG	2 cut(s)	211, 924
Msp20I	TGGCCA	1 cut(s)	49
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	4 cut(s)	41, 107, 829, 864
MunI	CAATTG	1 cut(s)	368
MvaI	CCWGG	4 cut(s)	41, 107, 829, 864
MwoI	GCNNNNNNNGC	2 cut(s)	312, 838
NdeII	GATC	3 cut(s)	388, 517, 936
NheI	GCTAGC	1 cut(s)	832
NlaIII	CATG	4 cut(s)	117, 210, 458, 702
NspI	RCATGY	3 cut(s)	117, 210, 702
PaeI	GCATGC	1 cut(s)	210
PagI	TCATGA	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	173, 659
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	495
Ppu21I	YACGTR	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	860
PsiI	TTATAA	1 cut(s)	600
Psp1406I	AACGTT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	4 cut(s)	39, 105, 827, 862
PspGI	CCWGG	4 cut(s)	39, 105, 827, 862
PspPI	GGNCC	1 cut(s)	860
PspPPI	RGGWCCY	1 cut(s)	860
PstI	CTGCAG	1 cut(s)	800
PsuI	RGATCY	1 cut(s)	936
RsaI	GTAC	2 cut(s)	92, 347
RsaNI	GTAC	2 cut(s)	91, 346
RseI	CAYNNNNRTG	2 cut(s)	211, 924
SapI	GCTCTTC	1 cut(s)	642
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	1 cut(s)	494
Sau3AI	GATC	3 cut(s)	388, 517, 936
Sau96I	GGNCC	1 cut(s)	860
ScrFI	CCNGG	4 cut(s)	41, 107, 829, 864
SduI	GDGCHC	3 cut(s)	105, 317, 367
SfaNI	GCATC	2 cut(s)	525, 604
SfcI	CTRYAG	1 cut(s)	796
SinI	GGWCC	1 cut(s)	860
SmiMI	CAYNNNNRTG	2 cut(s)	211, 924
SphI	GCATGC	1 cut(s)	210
Sse9I	AATT	6 cut(s)	368, 501, 775, 820, 854, 978
SsiI	CCGC	3 cut(s)	33, 304, 469
SspMI	CTAG	1 cut(s)	833
StyD4I	CCNGG	4 cut(s)	39, 105, 827, 862
TaaI	ACNGT	4 cut(s)	56, 330, 416, 487
TaiI	ACGT	3 cut(s)	250, 259, 753
TaqI	TCGA	1 cut(s)	579
TasI	AATT	6 cut(s)	368, 501, 775, 820, 854, 978
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	2 cut(s)	173, 659
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	3 cut(s)	35, 139, 616
TseI	GCWGC	1 cut(s)	493
TspDTI	ATGAA	5 cut(s)	85, 418, 471, 768, 981
TspGWI	ACGGA	2 cut(s)	616, 652
TspRI	CASTG	3 cut(s)	35, 139, 616
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	860
XapI	RAATTY	1 cut(s)	501
XceI	RCATGY	3 cut(s)	117, 210, 702
XspI	CTAG	1 cut(s)	833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.