Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Forward (+)

21270917 .. 21286787

Gene Structure 15871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1177700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3675 bp

ATGTACATAAAGCAGGTTATTATTGAAGGATTTAAGAGCTACAGAGAACAAGTTGCTACTGAGGCCTTCAGCCCAAAAGTTAATTGTGTTGTTGGTGCCAATGGTTCTGGAAAGACGAACTTCTTCCATGCGATCCGGTTTGTCCTAAGTGACCTTTTCCAAAACCTTCGGAGCGAGGATAGGCATGCTCTACTCCATGAAGGTGCAGGGCACCAAGTATTATCTGCGTTTGTGGAGATTGTCTTTGATAACGCTGACAATCGAATCCCGGTTGATAAGGAGGAAGTGCGCTTGCGAAGAACCATTGGTTTGAAGAAGGATGAGTATTTCTTGGATGGAAAGCATATCACGAAAACGGAGGTTATGAATTTACTGGAAAGTGCTGGGTTCTCTCGCTCCAATCCCTATTATGTTGTGCAGCAAGGAAAGATAGCATCCTTGACACTGATGAAAGACTCTGAACGGCTGGATTTGCTGAAGGAAATTGGTGGTACTCGAGTGTATGAGGAGAGGCGCCGAGAAAGTTTGAAAATTATGCAGGAAACTGGAAACAAAATAAAACAGATAGTTCAAGTTGTTCAGTACTTGGATGAGAGATTAAAGGAGTTGGATGAAGAGAAAGAGGAACTAAGACAGTATCAGCAATTTGACAAGCAGCGGAAATCTTTAGAATACACTATTTATGACAAGGAACTTCAGGATGCTCGCCAAAAGTTGGCAGAGGTAGAAGATGCTAGAAATAAGGTTTCTGAAACTTCAACAAAGATGTATAATACCGTGCTGGATGCCCATGAAAAGTCTAAGGAACTGGACAAGATTTTGAAGGATCTGACAAAAGAGCTTCAAACTTTAGATAAGGAAAAAGAAGCAATAGAAAAGCGAAGGACAGAAGCAATAAAGAAGCGCACAGAGCTTCAGCTTGATGTCAACGATTTGGAGGAGAAGAAAACTGGAAATACCCGTGCCAAAGAAGATGCTATGAAACAGCTGCAGAGTCTGCAGAAAGAAATTAAGGATTCAGAGGAAGAACTTAAGAAAATAAATCCTCTGTATGATAATCAAGTCAAGATGGAAATGGAGATAACAAAAGGAATAATGGAACGCGAGAAGCAGCTTAGCATACTGTACCAAAAACAAGGCCGTGCCACCCAGTTTTCAAGTAAAGCTGCTCGCGACAAATGGCTCCAAAAGGAAATTGATGATCTTGAGCGAGTTCTTTCTTCAAATTTGGCACAGGAGCAAAAACTTAAGGTTGAAATTGCACGGCTTGATGCTGAGTTGAGCGACCGGGATGTCTACATTGAGTCTCGAAGAACTGAGATTGCTACTATTGAATCTCTCATCTCTCAGTCACATGATGGGTTCAATCATCACAAGACACAGAGGGACAAGCTGCAGGACGAACGCAAGTCCCTGTGGAGGAAAGAAACTGAACTTTCTGCTGAAATTGAGAAGCTGAGAGCAGAAGTTGAAAAGGCTGAAAAGAGCCTTGATCATGCAACTCCGGGTGATGTGAGGAGAGGGCTAAATTCTGTTCGTAAGATTTGCAGAGAGTATAACATTTGTGGGGTATTTGGTCCTATCATTGAGTTGCTTGATTGTGATGAAAAGTTTTTTACTGCCGTTGAAGTAACTGCTGGGAACAGCTTGTTTCACGTTGTGGTTGAAAATGACGAAATATCAACCCAGATAATTAGGCACCTTAATTCATTGAAAGGTGGACGTGTTACGTTTATCCCCCTCAATAGGGTGAAGGCTCCACGGGTTACTTATCCACAGAATTCAGATGTGGTTCCTCTGTTAAAGAAATTAAAATTTGCTCCGAACTATACCCCGGCATTTTCCCAGGTATTTGCAAGAACAGTTGTTTGTCGAGACCTGGATGTGGCTACAAGGGTTGCTCGTAATGATGGTCTAGACTGCATTACTTTGGAAGGTGACCAAGTCAGCAAGAAGGGGGGTATGACGGGAGGATTTTATGACCATAGACGATCAAAATTGAAGTTTATGCATATAATCATGCAGAATACAAAATCTATAAACATGAAGGAAGAAGAGCTGGAGAAAGTGAAGAAAATGCTTGAAGATATCCTTATGGAAAATGATTTCATATACATGCAGAGCAGTAAGTGGGATGTTATAGACAGGAGTATTACAGAACTCGTAACTGAACAGCAGAAAATTGATGCTAAGCGGGCCCATGACAAATCAGAACTGGAACAACTTAAGCAGGACATTGCTAATGCTAATAAGCAGAAGAATCTGATTTCCAAAGCCTGTGGGAATAAGAAAAAATCACTGGCTGATGTGGAGACTCAAATTACTCAGCTTAGAGCCAGTATGGCCATGAAGAGAGCTGAAATGGGCACAGATCTCATTGATCATTTATCTCCAGATGAGAAGGATCTTCTTTCAAGATTAAACCCCGAAATAGCAGATCTTAAAGAGAAGCTTATTTCATGCAAGACAGATCGTTTTGAGACTGAAACAAGAAAGGCTGAGCTGGAAACTAATTTAACCACAAACCTTGAGAGGCGGAGGCAAGAACTAGAAGCCATAATATCTTCTGTGGAGACTGAGAATTATAATGGTGAAGCTGAAATTAAGATGCAGGAACTTAATGATGCTGAATTATTGGTTAAAGATGCAACAGAGCAGCTCAAAAGAGTTTCTGAAAGTATAGATAGCCAGTCAAAGCAGCTCAAGAGAATTAAAGATGAAAAGACTGCGTTAAAGACTTTGGAAGACAAGTATGAGAGGACACTTCAGGATGAAGCCAAAGAGTTAGAGCAACTGTTGAGTAAAAGAAATGTGTTTCTTGCAAAACAAGAAGAATACTCAAAGAAAATCAGGGAATTGGGTCCATTGTCATCGGATGCTTTTGAAGCGTATAAGCGAAGGGGCATCAAAGATTTGCATAAAGCGCTGCATAGATGCAATGAACAACTGCAACAGTTTAGTCATGTCAACAAGAAAGCACTTGATCAGTACGTAAATTTTACTGAGCAACGAGAAGAGCTCCAGAAGAGGCAAGCTGAGCTGAAAGCGGGTGATCAGAAAATTGATGAACTTATAAAGGTTTTGGATCAAAGGAAAGATGAATCAATAGAACGTACTTTTAAAGGTGTTGCTAGGCACTTCCGAGAAGTTTTCTCAGAACTTGTGCAAGGTGGCCATGGGCACCTTGTTATGATGAAGAAAAAGGATGGTCACCATGATGATGATGATCAGGATGAGGATGGACCACGTGATGCGGATTTGGAGGGAAGAGTTGAGAAATATATTGGTGTAAAAGTGAAGGTTTCTTTCACTGGACAAGGGGAGACTCAGTCCATGAAGCAGTTGTCTGGGGGTCAGAAAACTGTTGTTGCGCTAACGCTTATTTTTGCCATCCAGCGATGTGATCCTGCGCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCTCAGTACAGAACCGCTGTTGGAAATATGATCCGACGCCTGGCAGACATGGCAAACACTCAATTTATAACCACAACATTCCGGCCAGAGCTTGTGAAAGTATCTGACAAGATATATGCTGTTGAACATAAAAACAGGGTGAGCCGTGTCAATGTTGTATCAAAGGATGATGCATTGGATTTCATCGAGCGCGACCAGTCTCACAATGCGGACGTGGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1225

Amino Acids

141.43

Weight (kDa)

6.33

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_15	PF13175	1 - 450	3.5e-07	AAA ATPase domain
SMC_N	PF02463	2 - 1196	1.7e-52	RecF/RecN/SMC N terminal domain
AAA_23	PF13476	6 - 344	4.4e-09	AAA domain
AAA_21	PF13304	27 - 57	8.4e-06	AAA domain, putative AbiEii toxin, Type IV TA system
SMC_hinge	PF06470	523 - 634	9.9e-29	SMC proteins Flexible Hinge Domain
AAA_21	PF13304	1080 - 1176	6.6e-07	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	2586, 3074, 3518
AasI	GACNNNNNNGTC	1 cut(s)	1292
Acc36I	ACCTGC	1 cut(s)	4
AccB1I	GGYRCC	5 cut(s)	95, 210, 513, 1698, 3180
AccB7I	CCANNNNNTGG	1 cut(s)	715
AccI	GTMKAC	1 cut(s)	1296
AccII	CGCG	3 cut(s)	1104, 1173, 3642
AciI	CCGC	7 cut(s)	658, 2194, 2536, 3047, 3254, 3465, 3659
AclWI	GGATC	7 cut(s)	127, 834, 2412, 3093, 3398, 3443, 3475
AcoI	YGGCCR	3 cut(s)	2343, 3172, 3533
AcsI	RAATTY	6 cut(s)	367, 1225, 1528, 1780, 1814, 2995
AcuI	CTGAAG	5 cut(s)	52, 497, 680, 899, 2750
AcvI	CACGTG	1 cut(s)	3248
AcyI	GRCGYC	2 cut(s)	514, 3487
AdeI	CACNNNGTG	1 cut(s)	1660
AfaI	GTAC	7 cut(s)	5, 493, 584, 1127, 2990, 3115, 3458
AfeI	AGCGCT	1 cut(s)	2925
AfiI	CCNNNNNNNGG	6 cut(s)	715, 1419, 1746, 1747, 1885, 3490
AflII	CTTAAG	3 cut(s)	1031, 1247, 2225
AflIII	ACRYGT	1 cut(s)	1723
AjiI	CACGTC	2 cut(s)	1724, 3664
AjnI	CCWGG	3 cut(s)	1845, 1878, 3489
Alw21I	GWGCWC	1 cut(s)	3021
Alw26I	GTCTC	7 cut(s)	1311, 1869, 2306, 2474, 2567, 3317, 3654
AlwI	GGATC	7 cut(s)	127, 834, 2412, 3093, 3398, 3443, 3475
AlwNI	CAGNNNCTG	1 cut(s)	997
Ama87I	CYCGRG	1 cut(s)	495
Aor51HI	AGCGCT	1 cut(s)	2925
AoxI	GGCC	6 cut(s)	63, 1138, 2196, 2343, 3172, 3533
ApaI	GGGCCC	1 cut(s)	2200
ApoI	RAATTY	6 cut(s)	367, 1225, 1528, 1780, 1814, 2995
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	7 cut(s)	291, 516, 906, 2926, 3373, 3412, 3642
AspS9I	GGNCC	5 cut(s)	1577, 2196, 2197, 2861, 3242
AsuC2I	CCSGG	4 cut(s)	269, 1289, 1506, 1835
AsuHPI	GGTGA	7 cut(s)	1520, 1762, 1949, 2603, 3062, 3203, 3601
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	3 cut(s)	1577, 2861, 3242
BaeGI	GKGCMC	4 cut(s)	213, 2200, 2369, 3183
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BalI	TGGCCA	2 cut(s)	2345, 3174
BanI	GGYRCC	5 cut(s)	95, 210, 513, 1698, 3180
BanII	GRGCYC	2 cut(s)	2200, 3021
BbrPI	CACGTG	1 cut(s)	3248
BbsI	GAAGAC	1 cut(s)	2751
Bbv12I	GWGCWC	1 cut(s)	3021
BccI	CCATC	7 cut(s)	329, 1063, 1352, 1904, 3200, 3233, 3398
BceAI	ACGGC	5 cut(s)	479, 1125, 1280, 1607, 3579
BciT130I	CCWGG	3 cut(s)	1847, 1880, 3491
BclI	TGATCA	5 cut(s)	1492, 2380, 2983, 3052, 3226
BcnI	CCSGG	4 cut(s)	269, 1289, 1506, 1835
BcoDI	GTCTC	7 cut(s)	1311, 1869, 2306, 2474, 2567, 3317, 3654
BfaI	CTAG	4 cut(s)	735, 1916, 2549, 3132
BfmI	CTRYAG	4 cut(s)	40, 989, 998, 1394
BfoI	RGCGCY	2 cut(s)	517, 2927
BfrI	CTTAAG	3 cut(s)	1031, 1247, 2225
BfuAI	ACCTGC	1 cut(s)	4
BglI	GCCNNNNNGGC	1 cut(s)	2342
BglII	AGATCT	2 cut(s)	2371, 2437
BlpI	GCTNAGC	4 cut(s)	1115, 2190, 2499, 3036
BmcAI	AGTACT	1 cut(s)	584
Bme1390I	CCNGG	7 cut(s)	269, 1289, 1506, 1835, 1847, 1880, 3491
Bme18I	GGWCC	3 cut(s)	1577, 2861, 3242
BmeT110I	CYCGRG	1 cut(s)	495
BmgBI	CACGTC	2 cut(s)	1724, 3664
BmgT120I	GGNCC	5 cut(s)	1577, 2196, 2197, 2861, 3242
BmrFI	CCNGG	7 cut(s)	269, 1289, 1506, 1835, 1847, 1880, 3491
BmrI	ACTGGG	1 cut(s)	1144
BmuI	ACTGGG	1 cut(s)	1144
BpiI	GAAGAC	1 cut(s)	2751
BplI	GAGNNNNNCTC	2 cut(s)	3003, 3035
BpmI	CTGGAG	3 cut(s)	2081, 2376, 3005
Bpu1102I	GCTNAGC	4 cut(s)	1115, 2190, 2499, 3036
BpuEI	CTTGAG	3 cut(s)	1226, 2549, 2687
BpuMI	CCSGG	4 cut(s)	269, 1289, 1506, 1835
BsaAI	YACGTR	2 cut(s)	2992, 3248
BsaBI	GATNNNNATC	1 cut(s)	3225
BsaHI	GRCGYC	2 cut(s)	514, 3487
BsaI	GGTCTC	1 cut(s)	1869
BsaJI	CCNNGG	4 cut(s)	1760, 1833, 1845, 3175
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	3314, 3344
Bsc4I	CCNNNNNNNGG	6 cut(s)	715, 1419, 1746, 1747, 1885, 3490
Bse3DI	GCAATG	2 cut(s)	2235, 2944
Bse8I	GATNNNNATC	1 cut(s)	3225
BseBI	CCWGG	3 cut(s)	1847, 1880, 3491
BseDI	CCNNGG	4 cut(s)	1760, 1833, 1845, 3175
BseJI	GATNNNNATC	1 cut(s)	3225
BseLI	CCNNNNNNNGG	6 cut(s)	715, 1419, 1746, 1747, 1885, 3490
BseMI	GCAATG	2 cut(s)	2235, 2944
BseRI	GAGGAG	3 cut(s)	521, 953, 1531
BseSI	GKGCMC	4 cut(s)	213, 2200, 2369, 3183
BseYI	CCCAGC	2 cut(s)	383, 1637
BsgI	GTGCAG	2 cut(s)	225, 437
Bsh1236I	CGCG	3 cut(s)	1104, 1173, 3642
Bsh1285I	CGRYCG	1 cut(s)	1288
BshFI	GGCC	6 cut(s)	65, 1140, 2198, 2345, 3174, 3535
BshNI	GGYRCC	5 cut(s)	95, 210, 513, 1698, 3180
BsiEI	CGRYCG	1 cut(s)	1288
BsiHKAI	GWGCWC	1 cut(s)	3021
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	6 cut(s)	136, 269, 1288, 1505, 1835, 3532
BslFI	GGGAC	2 cut(s)	1396, 1400
BslI	CCNNNNNNNGG	6 cut(s)	715, 1419, 1746, 1747, 1885, 3490
BsmAI	GTCTC	7 cut(s)	1311, 1869, 2306, 2474, 2567, 3317, 3654
BsmFI	GGGAC	2 cut(s)	1396, 1400
BsnI	GGCC	6 cut(s)	65, 1140, 2198, 2345, 3174, 3535
Bso31I	GGTCTC	1 cut(s)	1869
BsoBI	CYCGRG	1 cut(s)	495
Bsp120I	GGGCCC	1 cut(s)	2196
Bsp1286I	GDGCHC	5 cut(s)	213, 2200, 2369, 3021, 3183
Bsp1407I	TGTACA	1 cut(s)	3
Bsp1720I	GCTNAGC	4 cut(s)	1115, 2190, 2499, 3036
Bsp19I	CCATGG	1 cut(s)	3175
Bsp68I	TCGCGA	1 cut(s)	1173
BspACI	CCGC	7 cut(s)	658, 2194, 2536, 3047, 3254, 3465, 3659
BspANI	GGCC	6 cut(s)	65, 1140, 2198, 2345, 3174, 3535
BspFNI	CGCG	3 cut(s)	1104, 1173, 3642
BspMAI	CTGCAG	3 cut(s)	993, 1002, 1398
BspMI	ACCTGC	1 cut(s)	4
BspPI	GGATC	7 cut(s)	127, 834, 2412, 3093, 3398, 3443, 3475
BspQI	GCTCTTC	2 cut(s)	2049, 3009
BspT107I	GGYRCC	5 cut(s)	95, 210, 513, 1698, 3180
BspTI	CTTAAG	3 cut(s)	1031, 1247, 2225
BspTNI	GGTCTC	1 cut(s)	1869
BsrDI	GCAATG	2 cut(s)	2235, 2944
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	4 cut(s)	1760, 1833, 1845, 3175
BssNI	GRCGYC	2 cut(s)	514, 3487
BssT1I	CCWWGG	1 cut(s)	3175
Bst2UI	CCWGG	3 cut(s)	1847, 1880, 3491
Bst4CI	ACNGT	7 cut(s)	636, 778, 1125, 1864, 2796, 2955, 3364
Bst6I	CTCTTC	6 cut(s)	609, 2049, 2345, 3009, 3020, 3262
BstACI	GRCGYC	2 cut(s)	514, 3487
BstAFI	CTTAAG	3 cut(s)	1031, 1247, 2225
BstAPI	GCANNNNNTGC	1 cut(s)	997
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	2 cut(s)	2992, 3248
BstC8I	GCNNGC	6 cut(s)	186, 293, 706, 1171, 2196, 3033
BstDSI	CCRYGG	2 cut(s)	1760, 3175
BstEII	GGTNACC	2 cut(s)	1937, 3209
BstFNI	CGCG	3 cut(s)	1104, 1173, 3642
BstH2I	RGCGCY	2 cut(s)	517, 2927
BstHHI	GCGC	7 cut(s)	291, 516, 906, 2926, 3373, 3412, 3642
BstMAI	GTCTC	7 cut(s)	1311, 1869, 2306, 2474, 2567, 3317, 3654
BstMCI	CGRYCG	1 cut(s)	1288
BstNI	CCWGG	3 cut(s)	1847, 1880, 3491
BstNSI	RCATGY	2 cut(s)	188, 2119
BstPI	GGTNACC	2 cut(s)	1937, 3209
BstSCI	CCNGG	7 cut(s)	267, 1287, 1504, 1833, 1845, 1878, 3489
BstSFI	CTRYAG	4 cut(s)	40, 989, 998, 1394
BstSLI	GKGCMC	4 cut(s)	213, 2200, 2369, 3183
BstSNI	TACGTA	1 cut(s)	2992
BstUI	CGCG	3 cut(s)	1104, 1173, 3642
BstV2I	GAAGAC	1 cut(s)	2751
BstX2I	RGATCY	4 cut(s)	826, 2371, 2404, 2437
BstYI	RGATCY	4 cut(s)	826, 2371, 2404, 2437
BsuRI	GGCC	6 cut(s)	65, 1140, 2198, 2345, 3174, 3535
BtgI	CCRYGG	2 cut(s)	1760, 3175
BtgZI	GCGATG	1 cut(s)	3412
BtrI	CACGTC	2 cut(s)	1724, 3664
BtsIMutI	CAGTG	3 cut(s)	443, 2297, 3309
BtuMI	TCGCGA	1 cut(s)	1173
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	6 cut(s)	186, 293, 706, 1171, 2196, 3033
CaiI	CAGNNNCTG	1 cut(s)	997
CfoI	GCGC	7 cut(s)	291, 516, 906, 2926, 3373, 3412, 3642
Cfr13I	GGNCC	5 cut(s)	1577, 2196, 2197, 2861, 3242
CseI	GACGC	1 cut(s)	3495
Csp6I	GTAC	7 cut(s)	4, 492, 583, 1126, 2989, 3114, 3457
CspCI	CAANNNNNGTGG	4 cut(s)	2260, 2295, 2509, 2544
CviQI	GTAC	7 cut(s)	4, 492, 583, 1126, 2989, 3114, 3457
DinI	GGCGCC	1 cut(s)	515
DraI	TTTAAA	1 cut(s)	3121
DraIII	CACNNNGTG	1 cut(s)	1660
DrdI	GACNNNNNNGTC	1 cut(s)	1292
DseDI	GACNNNNNNGTC	1 cut(s)	1292
EaeI	YGGCCR	3 cut(s)	2343, 3172, 3533
Eam1104I	CTCTTC	6 cut(s)	609, 2049, 2345, 3009, 3020, 3262
EarI	CTCTTC	6 cut(s)	609, 2049, 2345, 3009, 3020, 3262
EciI	GGCGGA	1 cut(s)	2551
Ecl136II	GAGCTC	1 cut(s)	3019
Eco105I	TACGTA	1 cut(s)	2992
Eco130I	CCWWGG	1 cut(s)	3175
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	2 cut(s)	2200, 3021
Eco31I	GGTCTC	1 cut(s)	1869
Eco32I	GATATC	1 cut(s)	2089
Eco47I	GGWCC	3 cut(s)	1577, 2861, 3242
Eco47III	AGCGCT	1 cut(s)	2925
Eco53kI	GAGCTC	1 cut(s)	3019
Eco57I	CTGAAG	5 cut(s)	52, 497, 680, 899, 2750
Eco72I	CACGTG	1 cut(s)	3248
Eco88I	CYCGRG	1 cut(s)	495
Eco91I	GGTNACC	2 cut(s)	1937, 3209
EcoICRI	GAGCTC	1 cut(s)	3019
EcoO65I	GGTNACC	2 cut(s)	1937, 3209
EcoRI	GAATTC	1 cut(s)	1780
EcoRII	CCWGG	3 cut(s)	1845, 1878, 3489
EcoRV	GATATC	1 cut(s)	2089
EcoT14I	CCWWGG	1 cut(s)	3175
EcoT22I	ATGCAT	2 cut(s)	2013, 3625
EcoT38I	GRGCYC	2 cut(s)	2200, 3021
EgeI	GGCGCC	1 cut(s)	515
EheI	GGCGCC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	3175
FalI	AAGNNNNNCTT	6 cut(s)	104, 136, 2076, 2108, 2436, 2468
FaqI	GGGAC	2 cut(s)	1396, 1400
FauI	CCCGC	2 cut(s)	2187, 3040
FbaI	TGATCA	5 cut(s)	1492, 2380, 2983, 3052, 3226
FblI	GTMKAC	1 cut(s)	1296
FriOI	GRGCYC	2 cut(s)	2200, 3021
FspBI	CTAG	4 cut(s)	735, 1916, 2549, 3132
GlaI	GCGC	7 cut(s)	290, 515, 905, 2925, 3372, 3411, 3641
GsaI	CCCAGC	2 cut(s)	387, 1641
GsuI	CTGGAG	3 cut(s)	2081, 2376, 3005
HaeII	RGCGCY	2 cut(s)	517, 2927
HaeIII	GGCC	6 cut(s)	65, 1140, 2198, 2345, 3174, 3535
HapII	CCGG	6 cut(s)	136, 269, 1288, 1505, 1835, 3532
HgaI	GACGC	1 cut(s)	3495
HhaI	GCGC	7 cut(s)	291, 516, 906, 2926, 3373, 3412, 3642
Hin1I	GRCGYC	2 cut(s)	514, 3487
Hin6I	GCGC	7 cut(s)	289, 514, 904, 2924, 3371, 3410, 3640
HinP1I	GCGC	7 cut(s)	289, 514, 904, 2924, 3371, 3410, 3640
HincII	GTYRAC	2 cut(s)	928, 2968
HindII	GTYRAC	2 cut(s)	928, 2968
HindIII	AAGCTT	1 cut(s)	2450
HpaII	CCGG	6 cut(s)	136, 269, 1288, 1505, 1835, 3532
HphI	GGTGA	7 cut(s)	1520, 1762, 1949, 2603, 3062, 3203, 3601
Hpy166II	GTNNAC	4 cut(s)	928, 1297, 1721, 2968
Hpy8I	GTNNAC	4 cut(s)	928, 1297, 1721, 2968
Hpy99I	CGWCG	1 cut(s)	3489
HpyCH4III	ACNGT	7 cut(s)	636, 778, 1125, 1864, 2796, 2955, 3364
HpyCH4IV	ACGT	7 cut(s)	1656, 1723, 1730, 2991, 3112, 3247, 3663
HpySE526I	ACGT	7 cut(s)	1656, 1723, 1730, 2991, 3112, 3247, 3663
Hsp92I	GRCGYC	2 cut(s)	514, 3487
HspAI	GCGC	7 cut(s)	289, 514, 904, 2924, 3371, 3410, 3640
KasI	GGCGCC	1 cut(s)	513
Ksp22I	TGATCA	5 cut(s)	1492, 2380, 2983, 3052, 3226
LguI	GCTCTTC	2 cut(s)	2049, 3009
LmnI	GCTCC	7 cut(s)	171, 401, 1188, 1237, 1762, 1825, 3024
MaeI	CTAG	4 cut(s)	735, 1916, 2549, 3132
MaeII	ACGT	7 cut(s)	1656, 1723, 1730, 2991, 3112, 3247, 3663
MaeIII	GTNAC	8 cut(s)	149, 1350, 1630, 1726, 1765, 1937, 2164, 3209
MflI	RGATCY	4 cut(s)	826, 2371, 2404, 2437
MhlI	GDGCHC	5 cut(s)	213, 2200, 2369, 3021, 3183
MlsI	TGGCCA	2 cut(s)	2345, 3174
MluNI	TGGCCA	2 cut(s)	2345, 3174
Mly113I	GGCGCC	1 cut(s)	514
MlyI	GAGTC	5 cut(s)	449, 1003, 1313, 2308, 3319
MmeI	TCCRAC	3 cut(s)	588, 3451, 3508
Mox20I	TGGCCA	2 cut(s)	2345, 3174
Mph1103I	ATGCAT	2 cut(s)	2013, 3625
MroXI	GAANNNNTTC	1 cut(s)	122
MscI	TGGCCA	2 cut(s)	2345, 3174
MslI	CAYNNNNRTG	4 cut(s)	201, 2114, 3216, 3219
Msp20I	TGGCCA	2 cut(s)	2345, 3174
MspA1I	CMGCKG	3 cut(s)	658, 988, 3467
MspCI	CTTAAG	3 cut(s)	1031, 1247, 2225
MspI	CCGG	6 cut(s)	136, 269, 1288, 1505, 1835, 3532
MspR9I	CCNGG	7 cut(s)	269, 1289, 1506, 1835, 1847, 1880, 3491
MvaI	CCWGG	3 cut(s)	1847, 1880, 3491
MvnI	CGCG	3 cut(s)	1104, 1173, 3642
NarI	GGCGCC	1 cut(s)	514
NciI	CCSGG	4 cut(s)	269, 1289, 1506, 1835
NcoI	CCATGG	1 cut(s)	3175
NmeAIII	GCCGAG	1 cut(s)	542
NmuCI	GTSAC	4 cut(s)	149, 1350, 1937, 3209
NruI	TCGCGA	1 cut(s)	1173
NsiI	ATGCAT	2 cut(s)	2013, 3625
NspI	RCATGY	2 cut(s)	188, 2119
PaeI	GCATGC	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	65
PciSI	GCTCTTC	2 cut(s)	2049, 3009
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	5 cut(s)	264, 1016, 1334, 2260, 3101
PflFI	GACNNNGTC	2 cut(s)	1943, 3328
PflMI	CCANNNNNTGG	1 cut(s)	715
PleI	GAGTC	5 cut(s)	449, 1002, 1312, 2308, 3319
PluTI	GGCGCC	1 cut(s)	517
PmaCI	CACGTG	1 cut(s)	3248
PmlI	CACGTG	1 cut(s)	3248
PpsI	GAGTC	5 cut(s)	449, 1002, 1312, 2308, 3319
Ppu21I	YACGTR	2 cut(s)	2992, 3248
PsiI	TTATAA	3 cut(s)	2586, 3074, 3518
Psp124BI	GAGCTC	1 cut(s)	3021
Psp6I	CCWGG	3 cut(s)	1845, 1878, 3489
PspCI	CACGTG	1 cut(s)	3248
PspEI	GGTNACC	2 cut(s)	1937, 3209
PspFI	CCCAGC	2 cut(s)	383, 1637
PspGI	CCWGG	3 cut(s)	1845, 1878, 3489
PspOMI	GGGCCC	1 cut(s)	2196
PspPI	GGNCC	5 cut(s)	1577, 2196, 2197, 2861, 3242
PspXI	VCTCGAGB	1 cut(s)	495
PstI	CTGCAG	3 cut(s)	993, 1002, 1398
PstNI	CAGNNNCTG	1 cut(s)	997
PsuI	RGATCY	4 cut(s)	826, 2371, 2404, 2437
PsyI	GACNNNGTC	2 cut(s)	1943, 3328
PvuII	CAGCTG	1 cut(s)	988
RruI	TCGCGA	1 cut(s)	1173
RsaI	GTAC	7 cut(s)	5, 493, 584, 1127, 2990, 3115, 3458
RsaNI	GTAC	7 cut(s)	4, 492, 583, 1126, 2989, 3114, 3457
RseI	CAYNNNNRTG	4 cut(s)	201, 2114, 3216, 3219
SacI	GAGCTC	1 cut(s)	3021
SapI	GCTCTTC	2 cut(s)	2049, 3009
Sau96I	GGNCC	5 cut(s)	1577, 2196, 2197, 2861, 3242
ScaI	AGTACT	1 cut(s)	584
SchI	GAGTC	5 cut(s)	449, 1003, 1313, 2308, 3319
ScrFI	CCNGG	7 cut(s)	269, 1289, 1506, 1835, 1847, 1880, 3491
SduI	GDGCHC	5 cut(s)	213, 2200, 2369, 3021, 3183
SfcI	CTRYAG	4 cut(s)	40, 989, 998, 1394
SfoI	GGCGCC	1 cut(s)	515
Sfr274I	CTCGAG	1 cut(s)	495
SinI	GGWCC	3 cut(s)	1577, 2861, 3242
SlaI	CTCGAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	4 cut(s)	201, 2114, 3216, 3219
SmlI	CTYRAG	7 cut(s)	495, 1031, 1205, 1247, 2225, 2528, 2702
SmoI	CTYRAG	7 cut(s)	495, 1031, 1205, 1247, 2225, 2528, 2702
SnaBI	TACGTA	1 cut(s)	2992
SphI	GCATGC	1 cut(s)	188
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	7 cut(s)	658, 2194, 2536, 3047, 3254, 3465, 3659
SspDI	GGCGCC	1 cut(s)	513
SspMI	CTAG	4 cut(s)	735, 1916, 2549, 3132
SstI	GAGCTC	1 cut(s)	3021
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	7 cut(s)	267, 1287, 1504, 1833, 1845, 1878, 3489
StyI	CCWWGG	1 cut(s)	3175
TaaI	ACNGT	7 cut(s)	636, 778, 1125, 1864, 2796, 2955, 3364
TaiI	ACGT	7 cut(s)	1659, 1726, 1733, 2994, 3115, 3250, 3666
TaqI	TCGA	5 cut(s)	262, 496, 1309, 1873, 3636
TatI	WGTACW	3 cut(s)	3, 582, 3456
TfiI	GAWTC	5 cut(s)	264, 1016, 1334, 2260, 3101
TscAI	CASTG	3 cut(s)	450, 2304, 3316
TseFI	GTSAC	4 cut(s)	149, 1350, 1937, 3209
Tsp45I	GTSAC	4 cut(s)	149, 1350, 1937, 3209
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	3 cut(s)	450, 2304, 3316
Tth111I	GACNNNGTC	2 cut(s)	1943, 3328
Van91I	CCANNNNNTGG	1 cut(s)	715
Vha464I	CTTAAG	3 cut(s)	1031, 1247, 2225
VpaK11BI	GGWCC	3 cut(s)	1577, 2861, 3242
XapI	RAATTY	6 cut(s)	367, 1225, 1528, 1780, 1814, 2995
XbaI	TCTAGA	1 cut(s)	1915
XceI	RCATGY	2 cut(s)	188, 2119
XhoI	CTCGAG	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	1296
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	4 cut(s)	735, 1916, 2549, 3132
ZrmI	AGTACT	1 cut(s)	584
Zsp2I	ATGCAT	2 cut(s)	2013, 3625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.