Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Forward (+)

15757906 .. 15760915

Gene Structure 3010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTGAAGCAGAAATTAAGATTCAGGAACTTAATGATGCTGAATTATTGGTTAAAGATGCAACAGAGCAGAGTTTCTGAAAGTATAGATAGCCAGTCAAAGCAGCTTAAGAGAATTAAAGATGAAAAGACTGCGTTAAAGACTTTGGAAGACAAGTATGAGAGGACACTTCAGGATGAAGCCAAAGAATTAGAGCAACTGTTGAGTAAAAGAAATGTGTTTCTTGCAAAACAAGAAGAATACTCAAAGAAAATCAGGGAATTGGGTCCATTGTCATCGGATGCTTTTGAAGCGTATAAGCGAAGGGGCATCAAAGATTTGCATAAAGCGCTGCATAGATGCAATGAACAACTGCAACAGTTTAGTCATGTCAACAAGAAAGCACTTGATCAGTATGTAAATTTTACTGAGCAACGAGAAGAGCTCCAGAAGAGGCAAGCTGAGCTGAAAGCGGGTGATCAGAAAATTGATGAACTTATAAAGGTTTTGGATCAAAGGAAAGATGAATCAATAGAACGTACTTTTAAAGGTGTTGCTAGGCACTTCCGAGAAGTTTTCTCAGAACTTGTGCAAGGTGGCCATGGGCACCTTGTTATGATGAAGAAAAAGGATGGTCACCATGATGATGATGATCAGGATGAGGATGGACCACGTGATGCGGATTTGGAGGGAAGAGTCGAGAAATATATTGGTGTAAAAGTGAAGGTTTCTTTCACTGGACAAGGGGAGACTCAATCCATGAAGCAGTTGTCTGGAGGTCAGAAAACTGTTGTTGCGCTAACGCTTATTTTTGCCATCCAGCGATGTGATCCTGCCCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCTCAGTACAGAACCGCTGTTGGAAATGATCCGACGCCTGGCAGACATGGCAAACACTCAATTTATAACCACAACATTCCGGCCAGAGCTTGTGAAAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

320

Amino Acids

37.01

Weight (kDa)

8.7

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	479, 921
AccB1I	GGYRCC	1 cut(s)	585
AciI	CCGC	3 cut(s)	452, 659, 870
AclWI	GGATC	4 cut(s)	498, 803, 848, 878
AcoI	YGGCCR	2 cut(s)	577, 936
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	155
AcvI	CACGTG	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	890
AfaI	GTAC	2 cut(s)	520, 863
AfeI	AGCGCT	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	893
AflII	CTTAAG	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	892
AluBI	AGCT	5 cut(s)	106, 424, 440, 445, 944
AluI	AGCT	5 cut(s)	106, 424, 440, 445, 944
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	722
AlwI	GGATC	4 cut(s)	498, 803, 848, 878
Aor51HI	AGCGCT	1 cut(s)	330
AoxI	GGCC	2 cut(s)	577, 936
ApeKI	GCWGC	3 cut(s)	103, 331, 845
ApoI	RAATTY	1 cut(s)	400
AspLEI	GCGC	2 cut(s)	331, 778
AspS9I	GGNCC	2 cut(s)	266, 647
AsuHPI	GGTGA	3 cut(s)	16, 467, 608
AvaII	GGWCC	2 cut(s)	266, 647
BaeGI	GKGCMC	1 cut(s)	588
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	585
BanII	GRGCYC	1 cut(s)	426
BbrPI	CACGTG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	115, 318, 857
BccI	CCATC	3 cut(s)	605, 638, 803
BciT130I	CCWGG	1 cut(s)	894
BclI	TGATCA	3 cut(s)	388, 457, 631
BcoDI	GTCTC	1 cut(s)	722
BfaI	CTAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	332
BfrI	CTTAAG	1 cut(s)	107
BisI	GCNGC	3 cut(s)	104, 332, 846
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	3 cut(s)	105, 333, 847
Bme1390I	CCNGG	1 cut(s)	894
Bme18I	GGWCC	2 cut(s)	266, 647
BmgT120I	GGNCC	2 cut(s)	266, 647
BmiI	GGNNCC	2 cut(s)	267, 587
BmrFI	CCNGG	1 cut(s)	894
BmsI	GCATC	7 cut(s)	27, 48, 271, 318, 329, 646, 832
BpiI	GAAGAC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
BpmI	CTGGAG	2 cut(s)	410, 774
Bpu1102I	GCTNAGC	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	653
BsaBI	GATNNNNATC	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	890
BsaJI	CCNNGG	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	1 cut(s)	893
Bse1I	ACTGG	2 cut(s)	94, 721
Bse3DI	GCAATG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	1 cut(s)	580
BseGI	GGATG	6 cut(s)	181, 286, 616, 643, 649, 795
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	1 cut(s)	893
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	4 cut(s)	399, 432, 573, 872
BseNI	ACTGG	2 cut(s)	94, 721
BseSI	GKGCMC	1 cut(s)	588
BseXI	GCAGC	3 cut(s)	115, 318, 857
BshFI	GGCC	2 cut(s)	579, 938
BshNI	GGYRCC	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	935
BslI	CCNNNNNNNGG	1 cut(s)	893
BsmAI	GTCTC	1 cut(s)	722
BsnI	GGCC	2 cut(s)	579, 938
Bsp1286I	GDGCHC	2 cut(s)	426, 588
Bsp143I	GATC	7 cut(s)	388, 457, 490, 631, 808, 853, 883
Bsp1720I	GCTNAGC	1 cut(s)	441
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	3 cut(s)	452, 659, 870
BspANI	GGCC	2 cut(s)	579, 938
BspCNI	CTCAG	4 cut(s)	400, 433, 572, 871
BspLI	GGNNCC	2 cut(s)	267, 587
BspPI	GGATC	4 cut(s)	498, 803, 848, 878
BspQI	GCTCTTC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	585
BspTI	CTTAAG	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	94, 721
BssECI	CCNNGG	1 cut(s)	580
BssMI	GATC	7 cut(s)	388, 457, 490, 631, 808, 853, 883
BssNI	GRCGYC	1 cut(s)	890
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	3 cut(s)	201, 360, 769
Bst6I	CTCTTC	3 cut(s)	414, 425, 667
BstACI	GRCGYC	1 cut(s)	890
BstAFI	CTTAAG	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	4 cut(s)	408, 441, 559, 858
BstDSI	CCRYGG	1 cut(s)	580
BstEII	GGTNACC	1 cut(s)	614
BstF5I	GGATG	6 cut(s)	181, 286, 616, 643, 649, 795
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	331, 778
BstKTI	GATC	7 cut(s)	391, 460, 493, 634, 811, 856, 886
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	7 cut(s)	388, 457, 490, 631, 808, 853, 883
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 328, 442, 903
BstNI	CCWGG	1 cut(s)	894
BstPI	GGTNACC	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	892
BstSLI	GKGCMC	1 cut(s)	588
BstV1I	GCAGC	3 cut(s)	115, 318, 857
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	579, 938
BtgI	CCRYGG	1 cut(s)	580
BtgZI	GCGATG	1 cut(s)	817
BtsCI	GGATG	6 cut(s)	181, 286, 616, 643, 649, 795
BtsIMutI	CAGTG	1 cut(s)	714
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	2 cut(s)	331, 778
Cfr13I	GGNCC	2 cut(s)	266, 647
CseI	GACGC	1 cut(s)	898
Csp6I	GTAC	2 cut(s)	519, 862
CviAII	CATG	5 cut(s)	368, 581, 620, 739, 902
CviJI	RGCY	9 cut(s)	93, 106, 182, 424, 440, 445, 579, 938, 944
CviKI_1	RGCY	9 cut(s)	93, 106, 182, 424, 440, 445, 579, 938, 944
CviQI	GTAC	2 cut(s)	519, 862
DdeI	CTNAG	4 cut(s)	408, 441, 559, 858
DpnI	GATC	7 cut(s)	390, 459, 492, 633, 810, 855, 885
DpnII	GATC	7 cut(s)	388, 457, 490, 631, 808, 853, 883
DraI	TTTAAA	1 cut(s)	526
EaeI	YGGCCR	2 cut(s)	577, 936
Eam1104I	CTCTTC	3 cut(s)	414, 425, 667
EarI	CTCTTC	3 cut(s)	414, 425, 667
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	266, 647
Eco47III	AGCGCT	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	155
Eco72I	CACGTG	1 cut(s)	653
Eco91I	GGTNACC	1 cut(s)	614
EcoICRI	GAGCTC	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	892
EcoT14I	CCWWGG	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	5 cut(s)	371, 584, 623, 742, 905
FatI	CATG	5 cut(s)	367, 580, 619, 738, 901
FauI	CCCGC	1 cut(s)	445
FbaI	TGATCA	3 cut(s)	388, 457, 631
Fnu4HI	GCNGC	3 cut(s)	104, 332, 846
FokI	GGATG	6 cut(s)	188, 293, 623, 650, 656, 782
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	3 cut(s)	104, 332, 846
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	2 cut(s)	330, 777
GluI	GCNGC	3 cut(s)	104, 332, 846
GsuI	CTGGAG	2 cut(s)	410, 774
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	2 cut(s)	579, 938
HapII	CCGG	1 cut(s)	935
HgaI	GACGC	1 cut(s)	898
HhaI	GCGC	2 cut(s)	331, 778
Hin1I	GRCGYC	1 cut(s)	890
Hin1II	CATG	5 cut(s)	371, 584, 623, 742, 905
Hin6I	GCGC	2 cut(s)	329, 776
HinP1I	GCGC	2 cut(s)	329, 776
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	4 cut(s)	21, 506, 675, 730
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	3 cut(s)	16, 467, 608
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	8 cut(s)	79, 280, 462, 548, 562, 762, 888, 959
Hpy188III	TCNNGA	6 cut(s)	25, 173, 427, 635, 679, 753
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	892
HpyAV	CCTTC	2 cut(s)	297, 697
HpyCH4III	ACNGT	3 cut(s)	201, 360, 769
HpyCH4IV	ACGT	2 cut(s)	517, 652
HpyCH4V	TGCA	8 cut(s)	61, 227, 322, 334, 342, 355, 571, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 328, 442, 903
HpyF3I	CTNAG	4 cut(s)	408, 441, 559, 858
HpySE526I	ACGT	2 cut(s)	517, 652
Hsp92I	GRCGYC	1 cut(s)	890
Hsp92II	CATG	5 cut(s)	371, 584, 623, 742, 905
HspAI	GCGC	2 cut(s)	329, 776
Ksp22I	TGATCA	3 cut(s)	388, 457, 631
Kzo9I	GATC	7 cut(s)	388, 457, 490, 631, 808, 853, 883
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	429
Lsp1109I	GCAGC	3 cut(s)	115, 318, 857
LweI	GCATC	7 cut(s)	27, 48, 271, 318, 329, 646, 832
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	2 cut(s)	517, 652
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	7 cut(s)	390, 459, 492, 633, 810, 855, 885
MboI	GATC	7 cut(s)	388, 457, 490, 631, 808, 853, 883
MboII	GAAGA	6 cut(s)	161, 248, 431, 442, 613, 684
MhlI	GDGCHC	2 cut(s)	426, 588
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	8 cut(s)	14, 43, 114, 188, 260, 400, 465, 915
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	2 cut(s)	684, 724
MmeI	TCCRAC	2 cut(s)	856, 911
MnlI	CCTC	6 cut(s)	156, 426, 634, 661, 749, 867
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	7 cut(s)	17, 32, 53, 108, 117, 137, 525
MslI	CAYNNNNRTG	2 cut(s)	621, 624
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	872
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	935
MspR9I	CCNGG	1 cut(s)	894
MvaI	CCWGG	1 cut(s)	894
MwoI	GCNNNNNNNGC	4 cut(s)	290, 328, 442, 903
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	7 cut(s)	388, 457, 490, 631, 808, 853, 883
NlaIII	CATG	5 cut(s)	371, 584, 623, 742, 905
NlaIV	GGNNCC	2 cut(s)	267, 587
NmuCI	GTSAC	1 cut(s)	614
PciSI	GCTCTTC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	21, 506
PkrI	GCNGC	3 cut(s)	105, 333, 847
PleI	GAGTC	2 cut(s)	683, 724
PmaCI	CACGTG	1 cut(s)	653
PmlI	CACGTG	1 cut(s)	653
PpsI	GAGTC	2 cut(s)	683, 724
Ppu21I	YACGTR	1 cut(s)	653
PsiI	TTATAA	2 cut(s)	479, 921
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	892
PspCI	CACGTG	1 cut(s)	653
PspEI	GGTNACC	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	2 cut(s)	267, 587
PspPI	GGNCC	2 cut(s)	266, 647
RsaI	GTAC	2 cut(s)	520, 863
RsaNI	GTAC	2 cut(s)	519, 862
RseI	CAYNNNNRTG	2 cut(s)	621, 624
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	7 cut(s)	17, 32, 53, 108, 117, 137, 525
SatI	GCNGC	3 cut(s)	104, 332, 846
Sau3AI	GATC	7 cut(s)	388, 457, 490, 631, 808, 853, 883
Sau96I	GGNCC	2 cut(s)	266, 647
SchI	GAGTC	2 cut(s)	684, 724
ScrFI	CCNGG	1 cut(s)	894
SduI	GDGCHC	2 cut(s)	426, 588
SfaNI	GCATC	7 cut(s)	27, 48, 271, 318, 329, 646, 832
SinI	GGWCC	2 cut(s)	266, 647
SmiMI	CAYNNNNRTG	2 cut(s)	621, 624
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	8 cut(s)	14, 43, 114, 188, 260, 400, 465, 915
SsiI	CCGC	3 cut(s)	452, 659, 870
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	892
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	3 cut(s)	201, 360, 769
TaiI	ACGT	2 cut(s)	520, 655
TaqI	TCGA	1 cut(s)	678
TasI	AATT	8 cut(s)	14, 43, 114, 188, 260, 400, 465, 915
TatI	WGTACW	1 cut(s)	861
TfiI	GAWTC	2 cut(s)	21, 506
Tru1I	TTAA	7 cut(s)	17, 32, 53, 108, 117, 137, 525
Tru9I	TTAA	7 cut(s)	17, 32, 53, 108, 117, 137, 525
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	3 cut(s)	103, 331, 845
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	8 cut(s)	138, 192, 360, 486, 519, 614, 755, 849
TspRI	CASTG	1 cut(s)	721
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	266, 647
XapI	RAATTY	1 cut(s)	400
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.