Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Forward (+)

4483653 .. 4495005

Gene Structure 11353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG064800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3618 bp

ATGCACATAAAGCAGATTATAATTGAAGGATTTAAGAGCTACAGAGAACAGGTTGCTACTGAGCCATTCAGTCCAAAAATCAATTGCGTTGTTGGTGCTAATGGGTCCGGAAAGACAAACTTTTTCCATGCAATTCGGTTTGTACTAAGTGACCTTTTCCAAAACCTTCGAAGCGACGATCGGCATGCTCTACTCCATGAAGGTGCAGGGCACCAAGTCTTATCTGCATTTGTGGAGATTGTCTTCGATAACTCTGACAATCGAATACCGGTTGATAAGGAGGAAGTGCGGTTGCGAAGGACAATTGGTTTGAAGAAGGATGAGTATTTCTTGGATGGAAAGCACATCACGAAAACTGAGGTTATGAATTTACTGGAAAGTGCTGGGTTCTCTCGCTCCAATCCATATTATGTTGTGCAGCAAGGAAAGATAGCATCCTTGACACTGATGAAAGATTCTGAGCGACTGGATTTACTTAAGGAAATCGGTGGCACTCGAGTGTATGAGGAGAGACGTCAAGAAAGTTTGAAAATCATGCAGGACACTGGTAACAAAAGAAAGCAGATAATTCAAGTTGTTCAGTACTTGGATGAGAGATTAAAGGAACTGGACGAAGAGAAAGAGGAACTCAGAAAGTATCAGCAGCTTGACAAGCAGCGAAAATCTCTGGAATACACTATATATGACAAGGAACTTCAGGATGCTCGCCAAAGGCTGGCAGAGGTAGAAGATGATCGGAATAAGGTTTCTGAAACATCGACGAGGATGTATAATAGTGTGCTGGATGCCCATGAAAAGTCCAAGGACTTGGATAAGGCTTTGAAAGATCTGACAAAAGAGCTACAAGCTTTAAATAAAGAGAAAGAAGCAGTGGAAAAACGAAGAACAGACGCGATAAAGAAACACACAGAGCTTGAGCTTGATGTCAAAGATCTACAGGAGAAGATATCTGGAAACATCCGAGCCAAAGAAGATGCTGTGAAACAACTACAGAGTCTGCAGAAAGAGATTCAGGATTCAATGGATGAGCTTGAGAATATAAGTCCTCTGTATGAGAATCAAGTCATGAGGGAAAAGGAGATAACAAAGGGAATAATGGAGCGTGAGAAGCAGCTTAGCATACTTTATCAAAAACAAGGTCGTGCGACCCAGTTTCCAAGTAAAGCTGCTCGTGACAAATGGCTTCAAAAGGAAATTGATGATCTTGAACGAGTTCTTTCGTCAAATTTGGCACAGGAGAACAAGCTTCAGGATGAAATTAAACGTCTTAATGCTGAATTGAACGAGCGGGGTACTTACATTGAATCTCGAAGAAATGAAATTACTAACAAGGAATCTCTCATCTCTCAGTCACGTGAAGGGTTCAGTCATCATAAAGCAGAGAGGGACAAGATGCAGGATGAGCGCAAGACCCTATGGAGGAAAGAAACAGAACTTTCTGCTGAAATTGATAAACTGAGAACAGAAGTTGAGAAGGCAGAGAAGAGCCTTGATCATTCAACTCCTGGTGATGTGAGGAGAGGGCTAAATTCTGTTCGTAAGATCTGCAGAGAGTATAATATTCCTGGGGTATTTGGTCCTATTATTGAGTTGCTTGATTGTGAGGAAAAGTTTTTTACAGCAGTGGAAGTTACTGCTGGGAACAGCTTATTTCATGTTGTGGTTGAAAATGATGAAATATCAACTCAGATAATCAGGCACCTTAATTCACTGAAAGGTGGGCGTGTTACTTTTATCCCCCTGAATAGGGTGAGGGCTCCAAGGGTAACTTATCCACAAAACTCAGATGTGGTTCCTTTGTTGAAGAGGTTAAAGTTTCTTCCAAAGTACACTGCTGCATTTGCTCAGGTATTTGCAAGAACAGTTGTTTGTCGAGATCTGGATGTGGCCACAAAGGTTGCTCGCAGCGATGGTCTAGATTGCATCACTTTAGAAGGAGATCAAGTCAGCAAAAAGGGTGGGATGACGGGAGGATTTTATGATCACAGACGCTCAAAGTTGAAGTTCATGAATCTAATCCGACAGAATACAAAATCTATCAGCTTGAAAGAAGAAGAACTTGAGAAAATCAGAAATATGCTTGAAAATATCCTCTTAATAGATGAGGAAATTACAAAACTTGTAACTGAGCAGCAGAAAATTGATGCTGAGCGAGTCCATGTCAAATCAGAACTGGAACAGCTTAAGCAGGACATTGCAAATGCTAATAAGCAGCAAAGTTTAATTTCTAAAGCACTTGGGAATAAGGAAAAATCACTTGCTGATGTGCGGGTTCAAATTGATCAGCTTAGAGCTAGTATGGCCATGAAGCATGCTGAAATGGGCACCGATCTCATTGATCATTTGACTCCAGAGGAGAAGGATCTTCTCTCAAGATTGAACCCTGAAATAGCAGATCTGAAAGAGAAGCTTATTACATGCAAGGCGGATCGAACTGAGACTGAAGCAAGAAAGGCAGAGCTTGAAACTAATTTAACTACGAACCTTAAGAGGCGGAAGCAAGAACTGGAGGCAATAATATCTTCTGTGGAAACTGATAATTTGCATGGTGAAGATGAAATAAAGATTCAGGAACTGAATGATGCTAGATTATTGGTTGAAGATGCAACAGAGCAGCTCAGAAGAGTTTCTGAAAGTATTGATGGTCAGTCGAGGCAATTGAGGAAAACCAAGGATGAAAAGACTAAGTTGAAGAACTTGGAAGACAACTATGAGAGGACACTTCAGGATGAAGCCAAACAGCTGGAGCAGCTACTGAGTAAAAGAAATATGTATCTTGCTAAACAAGAAGAGTACTCAAAGAAAATCAGGGAATTGGGTGCATTGTCATCGGATGCTTTTGAAACGTATAAGCGAAGGAACATCAAAGAACTACATAAAATGCTGCACAGATGCAATGAGCAACTGCAACAGTTTAGTCATGTCAACAAGAAAGCACTTGACCAGTATGTAAATTTTACAGAACAACGTGAAGAACTCCAGAGAAGGCAAGCTGAACTGGATGCAGGTGATGAGAAAATTGCAGAACTTATATCTGTCTTAGATCAAAGGAAGGATGAATCAATAGAACGCACTTTTAAAGGTGTTGCTAGGAACTTTCGAGAAGTTTTCTCTGAACTTGTGCAAGGTGGCCATGGTCACCTTCTCATGGTGAAAAGAAAGGATGGTAACCATGCTGACGATGATCTGGATGAGGATGATGGACCAGGGGAAACAGATAGATCTGAGAAATATATTGGTGTGAAAGTAAAGGTTTCTTTTACCGGGCAAGGAGAGACTCAGTCCATGAAGCAGTTGTCTGGGGGTCAGAAAACTGTTGTTGCATTGACGCTTATCTTTGCAATACAGCAATGTGATCCTGCTCCTTTCTATCTTTTTGATGAAATTGATGCAGCGCTGGATCCTCAGTACAGGACTGCTGTTGGAAATATGATCCGACGCCTGGCAGATACAGAAACTACTCAATTTATAACTACAACATTCCGACAAGAGCTTGTGAAAGTTTCTGACAAGATATATGGTGTTACACATTCAAACAGGGTGAGCCGTGTCAACGTTATCTCAAAGGAAGAAGCATTGAACTTTATTGATCAAGACCAGTCACACAATGCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1205

Amino Acids

139.15

Weight (kDa)

6.17

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_15	PF13175	1 - 450	2.3e-07	AAA ATPase domain
SMC_N	PF02463	2 - 1180	5.6e-68	RecF/RecN/SMC N terminal domain
AAA_23	PF13476	6 - 310	2.5e-10	AAA domain
AAA_21	PF13304	27 - 56	5.6e-06	AAA domain, putative AbiEii toxin, Type IV TA system
Myosin_tail_1	PF01576	271 - 495	2e-07	Myosin tail
SMC_hinge	PF06470	522 - 634	4.3e-28	SMC proteins Flexible Hinge Domain
AAA_21	PF13304	1069 - 1160	3.2e-06	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	20, 3470
AarI	CACCTGC	1 cut(s)	2996
AatII	GACGTC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	2996
AccB1I	GGYRCC	3 cut(s)	210, 1698, 2324
AccB7I	CCANNNNNTGG	1 cut(s)	715
AccBSI	CCGCTC	1 cut(s)	1288
AccII	CGCG	1 cut(s)	893
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	5 cut(s)	289, 1288, 2269, 2426, 2494
AclI	AACGTT	1 cut(s)	3555
AclWI	GGATC	6 cut(s)	2370, 2436, 3350, 3395, 3408, 3427
AcoI	YGGCCR	3 cut(s)	1887, 2301, 3130
AcsI	RAATTY	4 cut(s)	367, 1225, 1528, 2953
AcuI	CTGAAG	4 cut(s)	680, 1232, 2463, 2708
AcvI	CACGTG	1 cut(s)	1355
AcyI	GRCGYC	2 cut(s)	514, 3439
AfaI	GTAC	6 cut(s)	144, 584, 1294, 1829, 2795, 3410
AfeI	AGCGCT	1 cut(s)	3396
AfiI	CCNNNNNNNGG	6 cut(s)	715, 1419, 1746, 1747, 3148, 3442
AflII	CTTAAG	3 cut(s)	476, 2183, 2486
AgeI	ACCGGT	1 cut(s)	268
AjnI	CCWGG	4 cut(s)	1504, 1564, 3205, 3441
AleI	CACNNNNGTG	1 cut(s)	497
Alw26I	GTCTC	3 cut(s)	505, 2432, 3269
AlwI	GGATC	6 cut(s)	2370, 2436, 3350, 3395, 3408, 3427
AlwNI	CAGNNNCTG	3 cut(s)	997, 2575, 2755
Ama87I	CYCGRG	1 cut(s)	495
Aor13HI	TCCGGA	1 cut(s)	107
Aor51HI	AGCGCT	1 cut(s)	3396
AoxI	GGCC	3 cut(s)	1887, 2301, 3130
ApoI	RAATTY	4 cut(s)	367, 1225, 1528, 2953
ArsI	GACNNNNNNTTYG	4 cut(s)	292, 324, 1123, 1155
AsiGI	ACCGGT	1 cut(s)	268
Asp700I	GAANNNNTTC	2 cut(s)	1212, 2626
AspLEI	GCGC	2 cut(s)	1407, 3397
AspS9I	GGNCC	3 cut(s)	105, 1577, 3203
AsuC2I	CCSGG	1 cut(s)	3265
AsuHPI	GGTGA	7 cut(s)	1520, 1762, 2561, 3020, 3131, 3163, 3553
AsuII	TTCGAA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	3 cut(s)	105, 1577, 3203
BaeGI	GKGCMC	2 cut(s)	213, 2327
BalI	TGGCCA	3 cut(s)	1889, 2303, 3132
BamHI	GGATCC	1 cut(s)	3400
BanI	GGYRCC	3 cut(s)	210, 1698, 2324
BanII	GRGCYC	1 cut(s)	1759
BauI	CACGAG	1 cut(s)	1170
BbrPI	CACGTG	1 cut(s)	1355
BbsI	GAAGAC	2 cut(s)	235, 2709
BccI	CCATC	5 cut(s)	329, 1904, 2636, 3158, 3194
BceAI	ACGGC	1 cut(s)	3531
BcgI	CGANNNNNNTGC	4 cut(s)	167, 201, 2811, 2845
BciT130I	CCWGG	4 cut(s)	1506, 1566, 3207, 3443
BclI	TGATCA	5 cut(s)	1492, 1981, 2281, 2338, 3589
BcnI	CCSGG	1 cut(s)	3265
BcoDI	GTCTC	3 cut(s)	505, 2432, 3269
BfaI	CTAG	4 cut(s)	1916, 2295, 2586, 3090
BfmI	CTRYAG	5 cut(s)	40, 935, 989, 998, 1546
BfoI	RGCGCY	1 cut(s)	3398
BfrI	CTTAAG	3 cut(s)	476, 2183, 2486
BfuAI	ACCTGC	1 cut(s)	2996
BglII	AGATCT	6 cut(s)	826, 931, 1542, 1876, 2395, 3221
BlpI	GCTNAGC	2 cut(s)	1115, 2148
BmcAI	AGTACT	2 cut(s)	584, 2795
Bme1390I	CCNGG	5 cut(s)	1506, 1566, 3207, 3265, 3443
Bme18I	GGWCC	3 cut(s)	105, 1577, 3203
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	105, 1577, 3203
BmiI	GGNNCC	7 cut(s)	106, 212, 1700, 1758, 1794, 2326, 3402
BmrFI	CCNGG	5 cut(s)	1506, 1566, 3207, 3265, 3443
BmrI	ACTGGG	1 cut(s)	1144
BmuI	ACTGGG	1 cut(s)	1144
BpiI	GAAGAC	2 cut(s)	235, 2709
BpmI	CTGGAG	4 cut(s)	2334, 2528, 2765, 2963
Bpu10I	CCTNAGC	1 cut(s)	1845
Bpu1102I	GCTNAGC	2 cut(s)	1115, 2148
Bpu14I	TTCGAA	1 cut(s)	169
BpuEI	CTTGAG	4 cut(s)	935, 1052, 2081, 2356
BpuMI	CCSGG	1 cut(s)	3265
BsaAI	YACGTR	1 cut(s)	1355
BsaHI	GRCGYC	2 cut(s)	514, 3439
BsaJI	CCNNGG	6 cut(s)	801, 1565, 1760, 2670, 3133, 3206
BsaWI	WCCGGW	2 cut(s)	107, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	1929, 1959
Bsc4I	CCNNNNNNNGG	6 cut(s)	715, 1419, 1746, 1747, 3148, 3442
Bse118I	RCCGGY	1 cut(s)	268
Bse3DI	GCAATG	3 cut(s)	2193, 2902, 3356
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	4 cut(s)	1506, 1566, 3207, 3443
BseDI	CCNNGG	6 cut(s)	801, 1565, 1760, 2670, 3133, 3206
BseLI	CCNNNNNNNGG	6 cut(s)	715, 1419, 1746, 1747, 3148, 3442
BseMI	GCAATG	3 cut(s)	2193, 2902, 3356
BseRI	GAGGAG	3 cut(s)	521, 1531, 2369
BseSI	GKGCMC	2 cut(s)	213, 2327
BseYI	CCCAGC	2 cut(s)	383, 1637
BsgI	GTGCAG	3 cut(s)	225, 437, 2870
Bsh1236I	CGCG	1 cut(s)	893
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	3 cut(s)	1889, 2303, 3132
BshNI	GGYRCC	3 cut(s)	210, 1698, 2324
BshTI	ACCGGT	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	3 cut(s)	108, 269, 3264
BslFI	GGGAC	1 cut(s)	1400
BslI	CCNNNNNNNGG	6 cut(s)	715, 1419, 1746, 1747, 3148, 3442
BsmAI	GTCTC	3 cut(s)	505, 2432, 3269
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	1400
BsnI	GGCC	3 cut(s)	1889, 2303, 3132
BsoBI	CYCGRG	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	169
Bsp1286I	GDGCHC	3 cut(s)	213, 1759, 2327
Bsp13I	TCCGGA	1 cut(s)	107
Bsp1720I	GCTNAGC	2 cut(s)	1115, 2148
Bsp19I	CCATGG	1 cut(s)	3133
BspACI	CCGC	5 cut(s)	289, 1288, 2269, 2426, 2494
BspANI	GGCC	3 cut(s)	1889, 2303, 3132
BspEI	TCCGGA	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	893
BspHI	TCATGA	2 cut(s)	1065, 2007
BspLI	GGNNCC	7 cut(s)	106, 212, 1700, 1758, 1794, 2326, 3402
BspMAI	CTGCAG	2 cut(s)	1002, 1550
BspMI	ACCTGC	1 cut(s)	2996
BspPI	GGATC	6 cut(s)	2370, 2436, 3350, 3395, 3408, 3427
BspQI	GCTCTTC	1 cut(s)	1478
BspT104I	TTCGAA	1 cut(s)	169
BspT107I	GGYRCC	3 cut(s)	210, 1698, 2324
BspTI	CTTAAG	3 cut(s)	476, 2183, 2486
BsrBI	CCGCTC	1 cut(s)	1288
BsrDI	GCAATG	3 cut(s)	2193, 2902, 3356
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	6 cut(s)	801, 1565, 1760, 2670, 3133, 3206
BssNI	GRCGYC	2 cut(s)	514, 3439
BssSI	CACGAG	1 cut(s)	1170
BssT1I	CCWWGG	4 cut(s)	801, 1760, 2670, 3133
Bst2BI	CACGAG	1 cut(s)	1170
Bst2UI	CCWGG	4 cut(s)	1506, 1566, 3207, 3443
Bst4CI	ACNGT	3 cut(s)	1864, 2913, 3316
Bst6I	CTCTTC	5 cut(s)	609, 1478, 1799, 2617, 2784
BstACI	GRCGYC	2 cut(s)	514, 3439
BstAFI	CTTAAG	3 cut(s)	476, 2183, 2486
BstBAI	YACGTR	1 cut(s)	1355
BstBI	TTCGAA	1 cut(s)	169
BstC8I	GCNNGC	6 cut(s)	186, 706, 717, 1903, 2313, 2991
BstDSI	CCRYGG	1 cut(s)	3133
BstEII	GGTNACC	2 cut(s)	3137, 3167
BstFNI	CGCG	1 cut(s)	893
BstH2I	RGCGCY	1 cut(s)	3398
BstHHI	GCGC	2 cut(s)	1407, 3397
BstMAI	GTCTC	3 cut(s)	505, 2432, 3269
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 652, 1108, 1402, 1841, 2300, 2453, 2749
BstNI	CCWGG	4 cut(s)	1506, 1566, 3207, 3443
BstNSI	RCATGY	3 cut(s)	188, 2315, 2421
BstPI	GGTNACC	2 cut(s)	3137, 3167
BstSCI	CCNGG	5 cut(s)	1504, 1564, 3205, 3263, 3441
BstSFI	CTRYAG	5 cut(s)	40, 935, 989, 998, 1546
BstSLI	GKGCMC	2 cut(s)	213, 2327
BstUI	CGCG	1 cut(s)	893
BstV2I	GAAGAC	2 cut(s)	235, 2709
BstX2I	RGATCY	8 cut(s)	826, 931, 1542, 1876, 2362, 2395, 3221, 3400
BstXI	CCANNNNNNTGG	2 cut(s)	808, 2743
BstYI	RGATCY	8 cut(s)	826, 931, 1542, 1876, 2362, 2395, 3221, 3400
BsuRI	GGCC	3 cut(s)	1889, 2303, 3132
BtgI	CCRYGG	1 cut(s)	3133
BtgZI	GCGATG	1 cut(s)	1923
BtsI	GCAGTG	3 cut(s)	876, 1629, 1830
BtsIMutI	CAGTG	6 cut(s)	443, 543, 876, 1629, 1709, 1830
BveI	ACCTGC	1 cut(s)	2996
Cac8I	GCNNGC	6 cut(s)	186, 706, 717, 1903, 2313, 2991
CaiI	CAGNNNCTG	3 cut(s)	997, 2575, 2755
CciI	TCATGA	2 cut(s)	1065, 2007
CfoI	GCGC	2 cut(s)	1407, 3397
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	105, 1577, 3203
CseI	GACGC	4 cut(s)	899, 1998, 3337, 3447
Csp6I	GTAC	6 cut(s)	143, 583, 1293, 1828, 2794, 3409
CspAI	ACCGGT	1 cut(s)	268
CspCI	CAANNNNNGTGG	4 cut(s)	1879, 1914, 1939, 1974
CviQI	GTAC	6 cut(s)	143, 583, 1293, 1828, 2794, 3409
DraI	TTTAAA	2 cut(s)	852, 3079
EaeI	YGGCCR	3 cut(s)	1887, 2301, 3130
Eam1104I	CTCTTC	5 cut(s)	609, 1478, 1799, 2617, 2784
EarI	CTCTTC	5 cut(s)	609, 1478, 1799, 2617, 2784
EciI	GGCGGA	2 cut(s)	2441, 2509
Eco130I	CCWWGG	4 cut(s)	801, 1760, 2670, 3133
Eco24I	GRGCYC	1 cut(s)	1759
Eco32I	GATATC	1 cut(s)	948
Eco47I	GGWCC	3 cut(s)	105, 1577, 3203
Eco47III	AGCGCT	1 cut(s)	3396
Eco57I	CTGAAG	4 cut(s)	680, 1232, 2463, 2708
Eco72I	CACGTG	1 cut(s)	1355
Eco88I	CYCGRG	1 cut(s)	495
Eco91I	GGTNACC	2 cut(s)	3137, 3167
EcoO65I	GGTNACC	2 cut(s)	3137, 3167
EcoRII	CCWGG	4 cut(s)	1504, 1564, 3205, 3441
EcoRV	GATATC	1 cut(s)	948
EcoT14I	CCWWGG	4 cut(s)	801, 1760, 2670, 3133
EcoT38I	GRGCYC	1 cut(s)	1759
ErhI	CCWWGG	4 cut(s)	801, 1760, 2670, 3133
Esp3I	CGTCTC	1 cut(s)	505
FalI	AAGNNNNNCTT	8 cut(s)	104, 136, 1753, 1785, 2043, 2075, 2394, 2426
FaqI	GGGAC	1 cut(s)	1400
FauI	CCCGC	2 cut(s)	1281, 2262
FbaI	TGATCA	5 cut(s)	1492, 1981, 2281, 2338, 3589
FriOI	GRGCYC	1 cut(s)	1759
FspBI	CTAG	4 cut(s)	1916, 2295, 2586, 3090
GlaI	GCGC	2 cut(s)	1406, 3396
GsaI	CCCAGC	2 cut(s)	387, 1641
GsuI	CTGGAG	4 cut(s)	2334, 2528, 2765, 2963
HaeII	RGCGCY	1 cut(s)	3398
HaeIII	GGCC	3 cut(s)	1889, 2303, 3132
HapII	CCGG	3 cut(s)	108, 269, 3264
HgaI	GACGC	4 cut(s)	899, 1998, 3337, 3447
HhaI	GCGC	2 cut(s)	1407, 3397
Hin1I	GRCGYC	2 cut(s)	514, 3439
Hin6I	GCGC	2 cut(s)	1405, 3395
HinP1I	GCGC	2 cut(s)	1405, 3395
HincII	GTYRAC	2 cut(s)	2926, 3553
HindII	GTYRAC	2 cut(s)	2926, 3553
HindIII	AAGCTT	3 cut(s)	846, 1244, 2408
HpaII	CCGG	3 cut(s)	108, 269, 3264
HphI	GGTGA	7 cut(s)	1520, 1762, 2561, 3020, 3131, 3163, 3553
Hpy166II	GTNNAC	3 cut(s)	1830, 2926, 3553
Hpy8I	GTNNAC	3 cut(s)	1830, 2926, 3553
Hpy99I	CGWCG	3 cut(s)	179, 763, 3441
HpyCH4III	ACNGT	3 cut(s)	1864, 2913, 3316
HpyCH4IV	ACGT	6 cut(s)	514, 1264, 1354, 2846, 2968, 3555
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 652, 1108, 1402, 1841, 2300, 2453, 2749
HpySE526I	ACGT	6 cut(s)	514, 1264, 1354, 2846, 2968, 3555
Hsp92I	GRCGYC	2 cut(s)	514, 3439
HspAI	GCGC	2 cut(s)	1405, 3395
Kpn2I	TCCGGA	1 cut(s)	107
Ksp22I	TGATCA	5 cut(s)	1492, 1981, 2281, 2338, 3589
LguI	GCTCTTC	1 cut(s)	1478
LmnI	GCTCC	5 cut(s)	401, 1099, 1762, 2746, 3367
MaeI	CTAG	4 cut(s)	1916, 2295, 2586, 3090
MaeII	ACGT	6 cut(s)	514, 1264, 1354, 2846, 2968, 3555
MbiI	CCGCTC	1 cut(s)	1288
MfeI	CAATTG	3 cut(s)	82, 303, 2657
MflI	RGATCY	8 cut(s)	826, 931, 1542, 1876, 2362, 2395, 3221, 3400
MhlI	GDGCHC	3 cut(s)	213, 1759, 2327
MlsI	TGGCCA	3 cut(s)	1889, 2303, 3132
MluNI	TGGCCA	3 cut(s)	1889, 2303, 3132
MlyI	GAGTC	4 cut(s)	1003, 2163, 2341, 3271
MmeI	TCCRAC	4 cut(s)	2044, 3403, 3460, 3508
Mox20I	TGGCCA	3 cut(s)	1889, 2303, 3132
MroI	TCCGGA	1 cut(s)	107
MroXI	GAANNNNTTC	2 cut(s)	1212, 2626
MscI	TGGCCA	3 cut(s)	1889, 2303, 3132
MslI	CAYNNNNRTG	2 cut(s)	201, 497
Msp20I	TGGCCA	3 cut(s)	1889, 2303, 3132
MspA1I	CMGCKG	1 cut(s)	2743
MspCI	CTTAAG	3 cut(s)	476, 2183, 2486
MspI	CCGG	3 cut(s)	108, 269, 3264
MspR9I	CCNGG	5 cut(s)	1506, 1566, 3207, 3265, 3443
MunI	CAATTG	3 cut(s)	82, 303, 2657
MvaI	CCWGG	4 cut(s)	1506, 1566, 3207, 3443
MvnI	CGCG	1 cut(s)	893
MwoI	GCNNNNNNNGC	8 cut(s)	10, 652, 1108, 1402, 1841, 2300, 2453, 2749
NciI	CCSGG	1 cut(s)	3265
NcoI	CCATGG	1 cut(s)	3133
NlaIV	GGNNCC	7 cut(s)	106, 212, 1700, 1758, 1794, 2326, 3402
NmuCI	GTSAC	5 cut(s)	149, 1172, 1350, 3137, 3600
NspI	RCATGY	3 cut(s)	188, 2315, 2421
NspV	TTCGAA	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	497
PaeI	GCATGC	2 cut(s)	188, 2315
PaeR7I	CTCGAG	1 cut(s)	495
PagI	TCATGA	2 cut(s)	1065, 2007
PaqCI	CACCTGC	1 cut(s)	2996
PciSI	GCTCTTC	1 cut(s)	1478
PdmI	GAANNNNTTC	2 cut(s)	1212, 2626
PfeI	GAWTC	9 cut(s)	455, 1009, 1016, 1057, 1304, 1334, 2011, 2566, 3059
PflFI	GACNNNGTC	1 cut(s)	3280
PflMI	CCANNNNNTGG	1 cut(s)	715
PinAI	ACCGGT	1 cut(s)	268
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	4 cut(s)	1002, 2162, 2341, 3271
PmaCI	CACGTG	1 cut(s)	1355
PmlI	CACGTG	1 cut(s)	1355
PpsI	GAGTC	4 cut(s)	1002, 2162, 2341, 3271
Ppu21I	YACGTR	1 cut(s)	1355
PsiI	TTATAA	2 cut(s)	20, 3470
Psp1406I	AACGTT	1 cut(s)	3555
Psp6I	CCWGG	4 cut(s)	1504, 1564, 3205, 3441
PspCI	CACGTG	1 cut(s)	1355
PspEI	GGTNACC	2 cut(s)	3137, 3167
PspFI	CCCAGC	2 cut(s)	383, 1637
PspGI	CCWGG	4 cut(s)	1504, 1564, 3205, 3441
PspN4I	GGNNCC	7 cut(s)	106, 212, 1700, 1758, 1794, 2326, 3402
PspPI	GGNCC	3 cut(s)	105, 1577, 3203
PspXI	VCTCGAGB	1 cut(s)	495
PstI	CTGCAG	2 cut(s)	1002, 1550
PstNI	CAGNNNCTG	3 cut(s)	997, 2575, 2755
PsuI	RGATCY	8 cut(s)	826, 931, 1542, 1876, 2362, 2395, 3221, 3400
PsyI	GACNNNGTC	1 cut(s)	3280
PvuI	CGATCG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	2743
RsaI	GTAC	6 cut(s)	144, 584, 1294, 1829, 2795, 3410
RsaNI	GTAC	6 cut(s)	143, 583, 1293, 1828, 2794, 3409
RseI	CAYNNNNRTG	2 cut(s)	201, 497
SapI	GCTCTTC	1 cut(s)	1478
Sau96I	GGNCC	3 cut(s)	105, 1577, 3203
ScaI	AGTACT	2 cut(s)	584, 2795
SchI	GAGTC	4 cut(s)	1003, 2163, 2341, 3271
ScrFI	CCNGG	5 cut(s)	1506, 1566, 3207, 3265, 3443
SduI	GDGCHC	3 cut(s)	213, 1759, 2327
SfcI	CTRYAG	5 cut(s)	40, 935, 989, 998, 1546
Sfr274I	CTCGAG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	169
SinI	GGWCC	3 cut(s)	105, 1577, 3203
SlaI	CTCGAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	201, 497
SmlI	CTYRAG	8 cut(s)	476, 495, 914, 1031, 2060, 2183, 2371, 2486
SmoI	CTYRAG	8 cut(s)	476, 495, 914, 1031, 2060, 2183, 2371, 2486
SphI	GCATGC	2 cut(s)	188, 2315
SsiI	CCGC	5 cut(s)	289, 1288, 2269, 2426, 2494
SspI	AATATT	1 cut(s)	1561
SspMI	CTAG	4 cut(s)	1916, 2295, 2586, 3090
StyD4I	CCNGG	5 cut(s)	1504, 1564, 3205, 3263, 3441
StyI	CCWWGG	4 cut(s)	801, 1760, 2670, 3133
TaaI	ACNGT	3 cut(s)	1864, 2913, 3316
TaiI	ACGT	6 cut(s)	517, 1267, 1357, 2849, 2971, 3558
TatI	WGTACW	5 cut(s)	142, 582, 1827, 2793, 3408
TfiI	GAWTC	9 cut(s)	455, 1009, 1016, 1057, 1304, 1334, 2011, 2566, 3059
TscAI	CASTG	6 cut(s)	450, 550, 876, 1629, 1716, 1837
TseFI	GTSAC	5 cut(s)	149, 1172, 1350, 3137, 3600
Tsp45I	GTSAC	5 cut(s)	149, 1172, 1350, 3137, 3600
TspRI	CASTG	6 cut(s)	450, 550, 876, 1629, 1716, 1837
Tth111I	GACNNNGTC	1 cut(s)	3280
Van91I	CCANNNNNTGG	1 cut(s)	715
Vha464I	CTTAAG	3 cut(s)	476, 2183, 2486
VpaK11BI	GGWCC	3 cut(s)	105, 1577, 3203
XapI	RAATTY	4 cut(s)	367, 1225, 1528, 2953
XbaI	TCTAGA	1 cut(s)	1915
XceI	RCATGY	3 cut(s)	188, 2315, 2421
XhoI	CTCGAG	1 cut(s)	495
XmnI	GAANNNNTTC	2 cut(s)	1212, 2626
XspI	CTAG	4 cut(s)	1916, 2295, 2586, 3090
ZraI	GACGTC	1 cut(s)	515
ZrmI	AGTACT	2 cut(s)	584, 2795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.