Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Forward (+)

40921625 .. 40922574

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0293400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGACTCTACTACTCAGTCACCTTCACACTTCACTACCAAGTTCACATTCATGATCGACACTTACAGACGAAGTCTCCTCCAGCGGACTATTCAACTGGACCACTCGTTTTGATACCTCGCTCCCACAACACAATTGTGATAGTTGAGTTTGATATCAAAGAAAACAAGGAGTGGGATCCTCATGGACCTCATGTTGGGATCAATATAAATATTATCTCATCAGTTGTCAATGCTAGTTGGGATTATAGTGCCGTGCGATCGAGGAAGGTGGCAAATGCACAAATAGCTTACAATGCTACCACAAACATGCTCAGTGTGCTTTGGAGATACCAAGAAGACTCGAAGCCTGTTTCTGGTGGGAGTACTAATTCTCTTTCTTACCAAATTAACTTGCGAGATGTTCTCCCCGAACTGGTTACAATTGGTTTCTCAGCTAGTTTTGGACGTGAAAAGGGAAACTATGTGATAATTTCATGGGAATTCAATTCAATTTCGAATTCTGATGAAAGATCCAAATTTAATGATATAAGTAGCAACAATGGAGAAAAAAGGAAGCATGCATTCTTCGTAGGGGTGGTCAGTGCAATTTCTTTCTTCATTTTGATGCTTGGTGTGGCCTTGTGTACAGTGGTGGTAAAGAAGCAGAGAGCCATCAAAGGACATGGAAATGTTTACTCCACTGCCGCGGTGCCCTTTATAACTAAGAACCTCGAGAGACTAGCCTTTCCACGACGGTTTGCTTACCAAGAATTAGTTGTAGCCACCATTGGATTTGCAAAATATAGAAGGCTAGGCCAAGGAGGGTCAGCACAAGTTCATAAAGGAGTCCTACAAGATATAGGTTGCACAATTGCTGTCAAGCGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

290

Amino Acids

32.34

Weight (kDa)

9.63

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	42 - 171	3.5e-32	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AccB1I	GGYRCC	1 cut(s)	691
AccII	CGCG	1 cut(s)	689
AciI	CCGC	3 cut(s)	86, 687, 689
AclWI	GGATC	4 cut(s)	173, 186, 209, 507
AcsI	RAATTY	3 cut(s)	482, 499, 518
AfaI	GTAC	2 cut(s)	367, 628
AfiI	CCNNNNNNNGG	3 cut(s)	197, 356, 415
AgsI	TTSAA	3 cut(s)	96, 487, 492
AjiI	CACGTC	1 cut(s)	449
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	2 cut(s)	290, 437
AluI	AGCT	2 cut(s)	290, 437
Alw26I	GTCTC	2 cut(s)	81, 712
AlwI	GGATC	4 cut(s)	173, 186, 209, 507
Ama87I	CYCGRG	1 cut(s)	713
AoxI	GGCC	2 cut(s)	618, 796
ApoI	RAATTY	3 cut(s)	482, 499, 518
AspS9I	GGNCC	2 cut(s)	101, 188
AsuHPI	GGTGA	1 cut(s)	13
AsuII	TTCGAA	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	713
AvaII	GGWCC	2 cut(s)	101, 188
BaeGI	GKGCMC	1 cut(s)	696
BamHI	GGATCC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	691
BbsI	GAAGAC	1 cut(s)	345
BccI	CCATC	1 cut(s)	662
BceAI	ACGGC	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	81, 712
BfaI	CTAG	5 cut(s)	237, 438, 722, 794, 871
BisI	GCNGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	688
BmcAI	AGTACT	1 cut(s)	367
Bme18I	GGWCC	2 cut(s)	101, 188
BmeT110I	CYCGRG	1 cut(s)	713
BmgBI	CACGTC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	101, 188
BmiI	GGNNCC	2 cut(s)	180, 693
BmsI	GCATC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	390, 422
BpmI	CTGGAG	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	687, 799
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 356, 415
Bse1I	ACTGG	2 cut(s)	103, 420
BseDI	CCNNGG	2 cut(s)	687, 799
BseLI	CCNNNNNNNGG	3 cut(s)	197, 356, 415
BseMII	CTCAG	3 cut(s)	30, 328, 447
BseNI	ACTGG	2 cut(s)	103, 420
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	689
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	620, 798
BshNI	GGYRCC	1 cut(s)	691
BsiEI	CGRYCG	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	713
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	197, 356, 415
BsmAI	GTCTC	2 cut(s)	81, 712
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	2 cut(s)	620, 798
BsoBI	CYCGRG	1 cut(s)	713
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp1407I	TGTACA	1 cut(s)	626
Bsp143I	GATC	5 cut(s)	55, 178, 201, 260, 512
BspACI	CCGC	3 cut(s)	86, 687, 689
BspANI	GGCC	2 cut(s)	620, 798
BspCNI	CTCAG	3 cut(s)	29, 327, 446
BspFNI	CGCG	1 cut(s)	689
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	180, 693
BspPI	GGATC	4 cut(s)	173, 186, 209, 507
BspT104I	TTCGAA	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	691
BsrGI	TGTACA	1 cut(s)	626
BsrI	ACTGG	2 cut(s)	103, 420
BssECI	CCNNGG	2 cut(s)	687, 799
BssMI	GATC	5 cut(s)	55, 178, 201, 260, 512
BssT1I	CCWWGG	1 cut(s)	799
Bst4CI	ACNGT	2 cut(s)	631, 738
BstAUI	TGTACA	1 cut(s)	626
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	4 cut(s)	16, 314, 433, 705
BstDSI	CCRYGG	1 cut(s)	687
BstFNI	CGCG	1 cut(s)	689
BstKTI	GATC	5 cut(s)	58, 181, 204, 263, 515
BstMAI	GTCTC	2 cut(s)	81, 712
BstMBI	GATC	5 cut(s)	55, 178, 201, 260, 512
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 296, 319
BstNSI	RCATGY	2 cut(s)	313, 563
BstSLI	GKGCMC	1 cut(s)	696
BstUI	CGCG	1 cut(s)	689
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	2 cut(s)	178, 512
BstYI	RGATCY	2 cut(s)	178, 512
BsuRI	GGCC	2 cut(s)	620, 798
BtgI	CCRYGG	1 cut(s)	687
BtrI	CACGTC	1 cut(s)	449
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	4 cut(s)	322, 589, 636, 681
Cac8I	GCNNGC	1 cut(s)	561
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	101, 188
Cfr42I	CCGCGG	1 cut(s)	690
Csp6I	GTAC	2 cut(s)	366, 627
CspCI	CAANNNNNGTGG	2 cut(s)	93, 128
CviAII	CATG	7 cut(s)	53, 185, 194, 310, 477, 560, 665
CviJI	RGCY	9 cut(s)	290, 349, 437, 620, 653, 725, 764, 793, 798
CviKI_1	RGCY	9 cut(s)	290, 349, 437, 620, 653, 725, 764, 793, 798
CviQI	GTAC	2 cut(s)	366, 627
DdeI	CTNAG	4 cut(s)	16, 314, 433, 705
DpnI	GATC	5 cut(s)	57, 180, 203, 262, 514
DpnII	GATC	5 cut(s)	55, 178, 201, 260, 512
Eco130I	CCWWGG	1 cut(s)	799
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	101, 188
Eco88I	CYCGRG	1 cut(s)	713
EcoRI	GAATTC	2 cut(s)	482, 499
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	799
EcoT22I	ATGCAT	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	799
FaeI	CATG	7 cut(s)	56, 188, 197, 313, 480, 563, 668
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	7 cut(s)	52, 184, 193, 309, 476, 559, 664
Fnu4HI	GCNGC	1 cut(s)	687
Fsp4HI	GCNGC	1 cut(s)	687
FspBI	CTAG	5 cut(s)	237, 438, 722, 794, 871
GluI	GCNGC	1 cut(s)	687
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	620, 798
Hin1II	CATG	7 cut(s)	56, 188, 197, 313, 480, 563, 668
HinfI	GANTC	4 cut(s)	6, 341, 828, 867
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	3 cut(s)	46, 627, 676
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	2 cut(s)	53, 715
Hpy8I	GTNNAC	3 cut(s)	46, 627, 676
Hpy99I	CGWCG	1 cut(s)	738
HpyAV	CCTTC	3 cut(s)	34, 262, 783
HpyCH4III	ACNGT	2 cut(s)	631, 738
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	5 cut(s)	281, 563, 587, 779, 849
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 296, 319
HpyF3I	CTNAG	4 cut(s)	16, 314, 433, 705
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	7 cut(s)	56, 188, 197, 313, 480, 563, 668
KspI	CCGCGG	1 cut(s)	690
Kzo9I	GATC	5 cut(s)	55, 178, 201, 260, 512
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	5 cut(s)	84, 96, 342, 363, 401
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	5 cut(s)	237, 438, 722, 794, 871
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	2 cut(s)	19, 418
MalI	GATC	5 cut(s)	57, 180, 203, 262, 514
MboI	GATC	5 cut(s)	55, 178, 201, 260, 512
MboII	GAAGA	3 cut(s)	350, 559, 589
MfeI	CAATTG	3 cut(s)	135, 423, 852
MflI	RGATCY	2 cut(s)	178, 512
MhlI	GDGCHC	1 cut(s)	696
MlyI	GAGTC	2 cut(s)	335, 837
MnlI	CCTC	7 cut(s)	90, 129, 192, 201, 258, 722, 797
Mph1103I	ATGCAT	1 cut(s)	565
MseI	TTAA	2 cut(s)	390, 522
MslI	CAYNNNNRTG	5 cut(s)	51, 137, 308, 605, 669
MspA1I	CMGCKG	2 cut(s)	86, 689
MunI	CAATTG	3 cut(s)	135, 423, 852
Mva1269I	GAATGC	1 cut(s)	563
MvnI	CGCG	1 cut(s)	689
MwoI	GCNNNNNNNGC	3 cut(s)	287, 296, 319
NdeII	GATC	5 cut(s)	55, 178, 201, 260, 512
NlaIII	CATG	7 cut(s)	56, 188, 197, 313, 480, 563, 668
NlaIV	GGNNCC	2 cut(s)	180, 693
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	2 cut(s)	313, 563
NspV	TTCGAA	1 cut(s)	497
OliI	CACNNNNGTG	1 cut(s)	137
PaeI	GCATGC	1 cut(s)	563
PaeR7I	CTCGAG	1 cut(s)	713
PagI	TCATGA	1 cut(s)	52
PctI	GAATGC	1 cut(s)	563
PfeI	GAWTC	1 cut(s)	867
PflFI	GACNNNGTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	688
Ple19I	CGATCG	1 cut(s)	263
PleI	GAGTC	2 cut(s)	335, 836
PpsI	GAGTC	2 cut(s)	335, 836
PsiI	TTATAA	1 cut(s)	701
PspN4I	GGNNCC	2 cut(s)	180, 693
PspPI	GGNCC	2 cut(s)	101, 188
PsuI	RGATCY	2 cut(s)	178, 512
PsyI	GACNNNGTC	1 cut(s)	73
PvuI	CGATCG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	367, 628
RsaNI	GTAC	2 cut(s)	366, 627
RseI	CAYNNNNRTG	5 cut(s)	51, 137, 308, 605, 669
SacII	CCGCGG	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	390, 522
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	5 cut(s)	55, 178, 201, 260, 512
Sau96I	GGNCC	2 cut(s)	101, 188
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	2 cut(s)	335, 837
SduI	GDGCHC	1 cut(s)	696
SetI	ASST	9 cut(s)	26, 121, 193, 273, 292, 439, 451, 714, 847
SfaNI	GCATC	1 cut(s)	597
Sfr274I	CTCGAG	1 cut(s)	713
Sfr303I	CCGCGG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	497
SgrBI	CCGCGG	1 cut(s)	690
SinI	GGWCC	2 cut(s)	101, 188
SlaI	CTCGAG	1 cut(s)	713
SmiMI	CAYNNNNRTG	5 cut(s)	51, 137, 308, 605, 669
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SphI	GCATGC	1 cut(s)	563
SsiI	CCGC	3 cut(s)	86, 687, 689
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	5 cut(s)	237, 438, 722, 794, 871
StyI	CCWWGG	1 cut(s)	799
TaaI	ACNGT	2 cut(s)	631, 738
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	5 cut(s)	58, 263, 344, 497, 714
TatI	WGTACW	2 cut(s)	365, 626
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	2 cut(s)	390, 522
Tru9I	TTAA	2 cut(s)	390, 522
TscAI	CASTG	4 cut(s)	322, 589, 636, 688
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	5 cut(s)	41, 465, 522, 589, 809
TspRI	CASTG	4 cut(s)	322, 589, 636, 688
Tth111I	GACNNNGTC	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	101, 188
XapI	RAATTY	3 cut(s)	482, 499, 518
XceI	RCATGY	2 cut(s)	313, 563
XhoI	CTCGAG	1 cut(s)	713
XspI	CTAG	5 cut(s)	237, 438, 722, 794, 871
ZrmI	AGTACT	1 cut(s)	367
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.