Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Forward (+)

15746392 .. 15747783

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15150.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTACATAAAGCAGGTTATTATTGAAGGATTTAAGAGCTACAGAGAACAAGTTGCTACTGAGGCCTTCAGCCCAAAAGTTAATTGTGTTGTTGGTGCCAATGGGTCTGGAAAGACGAACTTCTTCCATGCGATCCGGTTTGTCCTAAGTGACCTTTTCCAAAACCTTCGGAGCGAGGATAGGCATGCTCTACTCCATGAAGGTGCAGGGCACCAAGTATTATCTGCGTTTGTGGAGATTGTCTTTGATAACGCTGACAATAGAATCCCGGTAATATTTATTGATCATATCTCGTTAGTTATTTTCTGTAACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

106

Amino Acids

11.84

Weight (kDa)

6.16

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	4
AccB1I	GGYRCC	2 cut(s)	95, 210
AclWI	GGATC	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	52
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	95, 210
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	40
BfuAI	ACCTGC	1 cut(s)	4
Bme1390I	CCNGG	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	97, 212
BmrFI	CCNGG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	2 cut(s)	95, 210
BsiSI	CCGG	2 cut(s)	136, 269
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	132, 283
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	97, 212
BspMI	ACCTGC	1 cut(s)	4
BspPI	GGATC	1 cut(s)	127
BspT107I	GGYRCC	2 cut(s)	95, 210
BsrGI	TGTACA	1 cut(s)	3
BssMI	GATC	2 cut(s)	132, 283
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	60, 146
BstKTI	GATC	2 cut(s)	135, 286
BstMBI	GATC	2 cut(s)	132, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	128, 185, 197
CviJI	RGCY	3 cut(s)	39, 65, 72
CviKI_1	RGCY	3 cut(s)	39, 65, 72
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	60, 146
DpnI	GATC	2 cut(s)	134, 285
DpnII	GATC	2 cut(s)	132, 283
Eco147I	AGGCCT	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	52
FaeI	CATG	3 cut(s)	131, 188, 200
FaiI	YATR	6 cut(s)	8, 129, 186, 198, 288, 316
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	3 cut(s)	127, 184, 196
FbaI	TGATCA	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	136, 269
Hin1II	CATG	3 cut(s)	131, 188, 200
HinfI	GANTC	1 cut(s)	264
HpaII	CCGG	2 cut(s)	136, 269
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	108
HpyAV	CCTTC	4 cut(s)	20, 76, 176, 194
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	60, 146
Hsp92II	CATG	3 cut(s)	131, 188, 200
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	132, 283
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	4 cut(s)	93, 149, 192, 282
MaeIII	GTNAC	2 cut(s)	149, 308
MalI	GATC	2 cut(s)	134, 285
MboI	GATC	2 cut(s)	132, 283
MboII	GAAGA	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	82
MnlI	CCTC	2 cut(s)	55, 169
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	2 cut(s)	33, 81
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	2 cut(s)	136, 269
MspR9I	CCNGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	132, 283
NlaIII	CATG	3 cut(s)	131, 188, 200
NlaIV	GGNNCC	2 cut(s)	97, 212
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	1 cut(s)	188
PaeI	GCATGC	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	97, 212
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	33, 81
Sau3AI	GATC	2 cut(s)	132, 283
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	5 cut(s)	18, 41, 156, 168, 205
SfcI	CTRYAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	201
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	1 cut(s)	82
SseBI	AGGCCT	1 cut(s)	65
SspI	AATATT	1 cut(s)	276
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	267
TasI	AATT	1 cut(s)	82
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	33, 81
Tru9I	TTAA	2 cut(s)	33, 81
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	213
XceI	RCATGY	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.