Rorug06G0475900

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
59835904 .. 59837846
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0475900.1

Sequence Viewer

Length: 1230 bp
ATGAACCCCATCATCTGCAACCCAATCCCTTATAACAAACCCCTTCCTCTCCTTTTCCTCAATTCCTCCCAATCCCCATTCTTCAATTCCCAAATCAACCCAAAACACTCGTCCTCAATTTCCTTTAACAAACGAAGATGGAGGAGGAGCTATACAGCTGGCGCGAACTCCGAAATCGACATGGTGAGAAACAAGCAAGGCATATACACGCCGAAACAGAAGAAAGTGGTGATTTTGTGGGACCTGGACAACAAACCCCCTCGCGGGCCGCCGTACCAGGCGGCCATGGCGCTGAAACAGGTGGCCCAGCACTTGGGCGAGGTAGTTGACGTGTCGGCCTACGCCAACCGCCACGCCTTCATCCACTTGCCCAACTGGGTAGTGGAGCAGCGCCGGGAACGGAAGCAATTAGACATTCTGGAGCGCAAGGGGATAGTCACGCCTCCCGAGCCTTACATTTGCGGAGTCTGCGGCCGGAAGTGTAAGTCGAATTTGGATTTGACGAAGCACTTCAAGCAGCTACACGAGCGGGAGCGGCAGAAGAAGCTGAACCGAATGCGGTCTCTGAAAGGGAAGAAACGGCAGCGTTTCAAGGAGAGGTTTATTTCGGGGAATCATAAGTACAATGAGGCTGCGAGTACTTTGATCAAGCCCAAGGTTGGGTATGGACTGGCGGCTGAGCTGAGAAGAGCTGGGGTTTTTGTGAAGACGGTGGAGGATAAGCCGCAGGCGGCGGATTGGGCATTGAAGAGGCAAATGCAGCATTCTATGAGCCGTGGGATTGACTGGTTGTTCTTGGTTTCCGACGATTCGGATTTTTCGGACATGTTGAGGAAGGCTAGAGAGTCCACTTTGGGGACTGTGGTGGTGGGGGATTGGGATAGAGCTTTGGGGAGGCATGCGGATGTGTGGGTGCCGTGGACTGAGGTCGAAAAGGGGGAGATTTCCGAGAAGGATTTGGTGCCGAAAAGGAGGACAAGTGAGTTCTCTGACGAGGATTCCGTGTTTTCGGATTTGGGATTTGGTGGTGGGAGTGAATTGGACAATGTGGTTGATGATCTTGTTGGACTAAGGTCTCAGGGGTCTGGTGGAATGAGGATTTCGGCATTTTCAGAAGGGGAAGTGGAAGAAGGAGATTGGGAGGAAGACTATGAGGAAAGTGAGGATGGGGACTATTTGTTGGAGGACAGCGAGGATGAGGATTCAGAAGATGAAGATGGGTTCTTTTGA

Protein Analysis

409

Amino Acids

46.78

Weight (kDa)

6.21

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AccB1I GGYRCC 2 cut(s) 913, 961
AccB7I CCANNNNNTGG 1 cut(s) 313
AccBSI CCGCTC 2 cut(s) 529, 535
AccII CGCG 2 cut(s) 164, 264
AcoI YGGCCR 2 cut(s) 282, 472
AcsI RAATTY 1 cut(s) 490
AfaI GTAC 3 cut(s) 275, 623, 640
AfiI CCNNNNNNNGG 6 cut(s) 263, 264, 313, 659, 660, 855
AflIII ACRYGT 2 cut(s) 330, 825
AgsI TTSAA 4 cut(s) 85, 514, 592, 748
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 2 cut(s) 243, 276
AluBI AGCT 7 cut(s) 150, 158, 520, 547, 682, 692, 887
AluI AGCT 7 cut(s) 150, 158, 520, 547, 682, 692, 887
Alw26I GTCTC 2 cut(s) 567, 1080
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 5 cut(s) 266, 282, 303, 336, 472
ApeKI GCWGC 5 cut(s) 388, 517, 583, 632, 760
ApoI RAATTY 1 cut(s) 490
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 4 cut(s) 164, 292, 393, 426
AspS9I GGNCC 3 cut(s) 241, 266, 304
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 196, 241
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 241
BanI GGYRCC 2 cut(s) 913, 961
BauI CACGAG 1 cut(s) 524
BbsI GAAGAC 2 cut(s) 713, 1152
BbvI GCAGC 5 cut(s) 400, 529, 595, 619, 772
BccI CCATC 4 cut(s) 17, 132, 1160, 1211
BceAI ACGGC 4 cut(s) 256, 596, 759, 901
BciT130I CCWGG 2 cut(s) 245, 278
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 567, 1080
BfaI CTAG 1 cut(s) 840
BfoI RGCGCY 2 cut(s) 293, 394
BlpI GCTNAGC 1 cut(s) 678
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 3 cut(s) 245, 278, 395
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 446
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 241, 266, 304
BmiI GGNNCC 3 cut(s) 242, 915, 963
BmrFI CCNGG 3 cut(s) 245, 278, 395
BmrI ACTGGG 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 385
BoxI GACNNNNGTC 2 cut(s) 926, 1072
BpiI GAAGAC 2 cut(s) 713, 1152
BpmI CTGGAG 1 cut(s) 440
Bpu1102I GCTNAGC 1 cut(s) 678
BpuMI CCSGG 1 cut(s) 395
BsaI GGTCTC 2 cut(s) 567, 1080
BsaJI CCNNGG 4 cut(s) 285, 654, 775, 917
BsaXI ACNNNNNCTCC 2 cut(s) 964, 994
Bsc4I CCNNNNNNNGG 6 cut(s) 263, 264, 313, 659, 660, 855
Bse1I ACTGG 3 cut(s) 380, 675, 791
BseBI CCWGG 2 cut(s) 245, 278
BseDI CCNNGG 4 cut(s) 285, 654, 775, 917
BseGI GGATG 4 cut(s) 360, 910, 1171, 1201
BseLI CCNNNNNNNGG 6 cut(s) 263, 264, 313, 659, 660, 855
BseMII CTCAG 4 cut(s) 669, 674, 915, 1091
BseNI ACTGG 3 cut(s) 380, 675, 791
BseRI GAGGAG 2 cut(s) 157, 160
BseX3I CGGCCG 1 cut(s) 472
BseXI GCAGC 5 cut(s) 400, 529, 595, 619, 772
BseYI CCCAGC 2 cut(s) 306, 692
Bsh1236I CGCG 2 cut(s) 164, 264
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 5 cut(s) 268, 284, 305, 338, 474
BshNI GGYRCC 2 cut(s) 913, 961
BsiEI CGRYCG 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 2 cut(s) 394, 475
BslFI GGGAC 3 cut(s) 254, 871, 1184
BslI CCNNNNNNNGG 6 cut(s) 263, 264, 313, 659, 660, 855
BsmAI GTCTC 2 cut(s) 567, 1080
BsmFI GGGAC 3 cut(s) 254, 871, 1184
BsmI GAATGC 2 cut(s) 561, 763
BsnI GGCC 5 cut(s) 268, 284, 305, 338, 474
Bso31I GGTCTC 2 cut(s) 567, 1080
BsoBI CYCGRG 1 cut(s) 446
Bsp143I GATC 2 cut(s) 645, 1057
Bsp1720I GCTNAGC 1 cut(s) 678
Bsp19I CCATGG 1 cut(s) 285
BspANI GGCC 5 cut(s) 268, 284, 305, 338, 474
BspCNI CTCAG 4 cut(s) 670, 675, 916, 1090
BspFNI CGCG 2 cut(s) 164, 264
BspLI GGNNCC 3 cut(s) 242, 915, 963
BspQI GCTCTTC 1 cut(s) 682
BspT107I GGYRCC 2 cut(s) 913, 961
BspTNI GGTCTC 2 cut(s) 567, 1080
BsrBI CCGCTC 2 cut(s) 529, 535
BsrI ACTGG 3 cut(s) 380, 675, 791
BssECI CCNNGG 4 cut(s) 285, 654, 775, 917
BssMI GATC 2 cut(s) 645, 1057
BssSI CACGAG 1 cut(s) 524
BssT1I CCWWGG 2 cut(s) 285, 654
Bst2BI CACGAG 1 cut(s) 524
Bst2UI CCWGG 2 cut(s) 245, 278
Bst4CI ACNGT 2 cut(s) 712, 862
Bst6I CTCTTC 2 cut(s) 682, 743
BstC8I GCNNGC 4 cut(s) 160, 266, 729, 900
BstDEI CTNAG 5 cut(s) 678, 683, 924, 1070, 1077
BstDSI CCRYGG 3 cut(s) 285, 775, 917
BstF5I GGATG 4 cut(s) 360, 910, 1171, 1201
BstFNI CGCG 2 cut(s) 164, 264
BstH2I RGCGCY 2 cut(s) 293, 394
BstHHI GCGC 4 cut(s) 164, 292, 393, 426
BstKTI GATC 2 cut(s) 648, 1060
BstMAI GTCTC 2 cut(s) 567, 1080
BstMBI GATC 2 cut(s) 645, 1057
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 9 cut(s) 287, 448, 468, 514, 526, 535, 544, 740, 760
BstNI CCWGG 2 cut(s) 245, 278
BstNSI RCATGY 2 cut(s) 829, 902
BstPAI GACNNNNGTC 2 cut(s) 926, 1072
BstSCI CCNGG 3 cut(s) 243, 276, 393
BstUI CGCG 2 cut(s) 164, 264
BstV1I GCAGC 5 cut(s) 400, 529, 595, 619, 772
BstV2I GAAGAC 2 cut(s) 713, 1152
BstZI CGGCCG 1 cut(s) 472
BsuRI GGCC 5 cut(s) 268, 284, 305, 338, 474
BtgI CCRYGG 3 cut(s) 285, 775, 917
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 4 cut(s) 360, 910, 1171, 1201
Cac8I GCNNGC 4 cut(s) 160, 266, 729, 900
CfoI GCGC 4 cut(s) 164, 292, 393, 426
Cfr13I GGNCC 3 cut(s) 241, 266, 304
Csp6I GTAC 3 cut(s) 274, 622, 639
CviAII CATG 4 cut(s) 181, 286, 826, 899
CviQI GTAC 3 cut(s) 274, 622, 639
DdeI CTNAG 5 cut(s) 678, 683, 924, 1070, 1077
DpnI GATC 2 cut(s) 647, 1059
DpnII GATC 2 cut(s) 645, 1057
EaeI YGGCCR 2 cut(s) 282, 472
EagI CGGCCG 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 682, 743
EarI CTCTTC 2 cut(s) 682, 743
EciI GGCGGA 1 cut(s) 749
EclXI CGGCCG 1 cut(s) 472
Eco130I CCWWGG 2 cut(s) 285, 654
Eco31I GGTCTC 2 cut(s) 567, 1080
Eco47I GGWCC 1 cut(s) 241
Eco52I CGGCCG 1 cut(s) 472
Eco88I CYCGRG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 243, 276
EcoT14I CCWWGG 2 cut(s) 285, 654
ErhI CCWWGG 2 cut(s) 285, 654
FaeI CATG 4 cut(s) 184, 289, 829, 902
FaqI GGGAC 3 cut(s) 254, 871, 1184
FatI CATG 4 cut(s) 180, 285, 825, 898
FauI CCCGC 2 cut(s) 257, 522
FbaI TGATCA 1 cut(s) 645
FokI GGATG 4 cut(s) 347, 917, 1178, 1208
FspBI CTAG 1 cut(s) 840
GlaI GCGC 4 cut(s) 163, 291, 392, 425
GsaI CCCAGC 2 cut(s) 310, 696
GsuI CTGGAG 1 cut(s) 440
HaeII RGCGCY 2 cut(s) 293, 394
HaeIII GGCC 5 cut(s) 268, 284, 305, 338, 474
HapII CCGG 2 cut(s) 394, 475
HhaI GCGC 4 cut(s) 164, 292, 393, 426
Hin1II CATG 4 cut(s) 184, 289, 829, 902
Hin6I GCGC 4 cut(s) 162, 290, 391, 424
HinP1I GCGC 4 cut(s) 162, 290, 391, 424
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 6 cut(s) 465, 613, 809, 845, 998, 1202
HpaII CCGG 2 cut(s) 394, 475
HphI GGTGA 2 cut(s) 196, 241
Hpy166II GTNNAC 3 cut(s) 328, 849, 921
Hpy188III TCNNGA 2 cut(s) 419, 446
Hpy8I GTNNAC 3 cut(s) 328, 849, 921
Hpy99I CGWCG 1 cut(s) 809
HpyAV CCTTC 6 cut(s) 53, 367, 829, 946, 1109, 1124
HpyCH4III ACNGT 2 cut(s) 712, 862
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 2 cut(s) 18, 760
HpyF10VI GCNNNNNNNGC 9 cut(s) 287, 448, 468, 514, 526, 535, 544, 740, 760
HpyF3I CTNAG 5 cut(s) 678, 683, 924, 1070, 1077
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 4 cut(s) 184, 289, 829, 902
HspAI GCGC 4 cut(s) 162, 290, 391, 424
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 2 cut(s) 645, 1057
LguI GCTCTTC 1 cut(s) 682
LmnI GCTCC 4 cut(s) 147, 385, 421, 532
Lsp1109I GCAGC 5 cut(s) 400, 529, 595, 619, 772
MaeI CTAG 1 cut(s) 840
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 436
MalI GATC 2 cut(s) 647, 1059
MbiI CCGCTC 2 cut(s) 529, 535
MboI GATC 2 cut(s) 645, 1057
MluCI AATT 6 cut(s) 61, 85, 117, 407, 490, 1037
MlyI GAGTC 2 cut(s) 474, 854
MmeI TCCRAC 3 cut(s) 828, 1045, 1161
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 903
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 394, 475
MspR9I CCNGG 3 cut(s) 245, 278, 395
Mva1269I GAATGC 2 cut(s) 561, 763
MvaI CCWGG 2 cut(s) 245, 278
MvnI CGCG 2 cut(s) 164, 264
MwoI GCNNNNNNNGC 9 cut(s) 287, 448, 468, 514, 526, 535, 544, 740, 760
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 285
NdeII GATC 2 cut(s) 645, 1057
NlaIII CATG 4 cut(s) 184, 289, 829, 902
NlaIV GGNNCC 3 cut(s) 242, 915, 963
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 2 cut(s) 829, 902
PaeI GCATGC 1 cut(s) 902
PciI ACATGT 1 cut(s) 825
PciSI GCTCTTC 1 cut(s) 682
PcsI WCGNNNNNNNCGW 1 cut(s) 999
PctI GAATGC 2 cut(s) 561, 763
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 4 cut(s) 613, 809, 998, 1202
PflMI CCANNNNNTGG 1 cut(s) 313
PleI GAGTC 2 cut(s) 473, 853
PpsI GAGTC 2 cut(s) 473, 853
PpuMI RGGWCCY 1 cut(s) 241
PscI ACATGT 1 cut(s) 825
PshAI GACNNNNGTC 2 cut(s) 926, 1072
PsiI TTATAA 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 243, 276
PspFI CCCAGC 2 cut(s) 306, 692
PspGI CCWGG 2 cut(s) 243, 276
PspN4I GGNNCC 3 cut(s) 242, 915, 963
PspPI GGNCC 3 cut(s) 241, 266, 304
PspPPI RGGWCCY 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 3 cut(s) 275, 623, 640
RsaNI GTAC 3 cut(s) 274, 622, 639
RseI CAYNNNNRTG 1 cut(s) 903
SapI GCTCTTC 1 cut(s) 682
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 2 cut(s) 645, 1057
Sau96I GGNCC 3 cut(s) 241, 266, 304
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 2 cut(s) 474, 854
ScrFI CCNGG 3 cut(s) 245, 278, 395
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 903
SphI GCATGC 1 cut(s) 902
Sse9I AATT 6 cut(s) 61, 85, 117, 407, 490, 1037
SspMI CTAG 1 cut(s) 840
StyD4I CCNGG 3 cut(s) 243, 276, 393
StyI CCWWGG 2 cut(s) 285, 654
TaaI ACNGT 2 cut(s) 712, 862
TaiI ACGT 1 cut(s) 333
TaqI TCGA 3 cut(s) 177, 488, 930
TasI AATT 6 cut(s) 61, 85, 117, 407, 490, 1037
TatI WGTACW 2 cut(s) 621, 638
TauI GCSGC 7 cut(s) 271, 284, 474, 538, 677, 727, 734
TfiI GAWTC 4 cut(s) 613, 809, 998, 1202
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 5 cut(s) 388, 517, 583, 632, 760
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 17, 349, 1227
TspGWI ACGGA 2 cut(s) 415, 991
Van91I CCANNNNNTGG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 490
XceI RCATGY 2 cut(s) 829, 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 1 cut(s) 840
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.