Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Forward (+)

59847747 .. 59848751

Gene Structure 1005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0476100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGATGATGAGAGAAGAAGATGGGAGGATTTAGACACAGACTGCTTGACGAATGTGTTTTCAAGAGTTAAAATGGAGTCTCTGTTTTTGGCTGTTCCTTTTGTCTGCAAATCATGGTACAAAACAAGTCTCAATCCTTTGTGCTGGAAACGTCTCTGGTTTCCAGATTTTATACCTTATCCTTTGTTTACTGATAAGGCCGAGGATCGGCTTCAACCTGCTCAGAGTTTTGGTCCCTTTTACGATCAGTTTGTTGATGAATATCGAATAAACAAGACTCGGTTCTCTATCGATGCTTTTGTGAAGTTGGTAGTCGATCGTAGCAATGGAATTGCCACTTCTCTCATACTACCTGAATTCTGTACGGAAGAATCATTGAGATATGTTTCAGATGCATGCCCTCTCCTTTGGGGAGTTTGGTTCACAGATGACCTGGTGCTTTTCAAGAATTCTCAAATTATTGCACAAGTGATTGGCAAGTGGAAATTTTTGGAGTGGTTGTATTTGGGGAGTAGCTTGGTGAAAATTATGCGGCAAAGAAGATTGAGTAAAAAACATTTGAGTGAACATTTTAAAGTGTTGTTGACAGTGGAAAATCCACCCTGCTATAATGTTCTGGATAGAATCCTTGTGCAGATTGCCACTCACTGCAAACATTTTAAGGAATTATCTATTTCTTCCTGCAATGTTGGTGAAATTGAGGCATCCACAATTGTGAAGTTGCTGCCAAACCTTAAAAAGTTGGATGTGAGCAGTTCTTGCATTGATCGAGATAGTGTTGTTAAACTATTGCAGGGCCTTAAAAAGGTGGTGCGTTTTCATATCACAAGATGTGAAGGTTTTGAAGAGAGTGATGAAGAAATATCAAAGCTTGGTTCCCAGGTCAAACACTTTTTATGCCAAGATTGTGCAAACTGTGATTTATCTTGGTTTAAAATAATCGTTAAACAGAGGAAGGCTATTTTCAGGACATTGGAGTTATCAAATCAGATTAATGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

334

Amino Acids

38.96

Weight (kDa)

8.16

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
AciI	CCGC	1 cut(s)	532
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	3 cut(s)	356, 448, 485
AfaI	GTAC	2 cut(s)	119, 364
AfiI	CCNNNNNNNGG	2 cut(s)	207, 805
AgsI	TTSAA	4 cut(s)	63, 215, 445, 845
AjnI	CCWGG	2 cut(s)	432, 879
AleI	CACNNNNGTG	1 cut(s)	713
AluBI	AGCT	2 cut(s)	516, 871
AluI	AGCT	2 cut(s)	516, 871
Alw26I	GTCTC	3 cut(s)	84, 134, 158
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	198, 796
ApeKI	GCWGC	1 cut(s)	724
ApoI	RAATTY	3 cut(s)	356, 448, 485
AseI	ATTAAT	1 cut(s)	993
AspS9I	GGNCC	2 cut(s)	233, 796
AsuHPI	GGTGA	2 cut(s)	532, 704
AvaII	GGWCC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	711
BccI	CCATC	1 cut(s)	15
BciT130I	CCWGG	2 cut(s)	434, 881
BcoDI	GTCTC	3 cut(s)	84, 134, 158
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	2 cut(s)	533, 725
BlsI	GCNGC	2 cut(s)	534, 726
Bme1390I	CCNGG	2 cut(s)	434, 881
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	233, 796
BmiI	GGNNCC	2 cut(s)	235, 877
BmrFI	CCNGG	2 cut(s)	434, 881
BmsI	GCATC	3 cut(s)	283, 382, 713
Bsa29I	ATCGAT	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	201, 879
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 485, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 805
Bse3DI	GCAATG	2 cut(s)	331, 691
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	434, 881
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	201, 879
BseGI	GGATG	3 cut(s)	10, 704, 751
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	207, 805
BseMI	GCAATG	2 cut(s)	331, 691
BseMII	CTCAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	711
BsgI	GTGCAG	1 cut(s)	653
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	200, 798
BshVI	ATCGAT	1 cut(s)	291
BsiEI	CGRYCG	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	207, 805
BsmAI	GTCTC	3 cut(s)	84, 134, 158
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	200, 798
Bsp143I	GATC	4 cut(s)	205, 244, 316, 766
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	2 cut(s)	200, 798
BspCNI	CTCAG	1 cut(s)	235
BspDI	ATCGAT	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	235, 877
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	213
BsrDI	GCAATG	2 cut(s)	331, 691
BssECI	CCNNGG	2 cut(s)	201, 879
BssMI	GATC	4 cut(s)	205, 244, 316, 766
Bst2UI	CCWGG	2 cut(s)	434, 881
Bst4CI	ACNGT	2 cut(s)	589, 917
Bst6I	CTCTTC	1 cut(s)	840
BstAPI	GCANNNNNTGC	1 cut(s)	759
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	1 cut(s)	222
BstENI	CCTNNNNNAGG	1 cut(s)	803
BstF5I	GGATG	3 cut(s)	10, 704, 751
BstKTI	GATC	4 cut(s)	208, 247, 319, 769
BstMAI	GTCTC	3 cut(s)	84, 134, 158
BstMBI	GATC	4 cut(s)	205, 244, 316, 766
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	759
BstNI	CCWGG	2 cut(s)	434, 881
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	432, 879
BstV1I	GCAGC	1 cut(s)	711
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	200, 798
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	3 cut(s)	10, 704, 751
BtsI	GCAGTG	1 cut(s)	646
BtsIMutI	CAGTG	2 cut(s)	594, 646
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	397
Cfr13I	GGNCC	2 cut(s)	233, 796
ClaI	ATCGAT	1 cut(s)	291
CsiI	ACCWGGT	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	118, 363
CviAII	CATG	2 cut(s)	114, 396
CviJI	RGCY	7 cut(s)	92, 200, 211, 516, 798, 871, 959
CviKI_1	RGCY	7 cut(s)	92, 200, 211, 516, 798, 871, 959
CviQI	GTAC	2 cut(s)	118, 363
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	4 cut(s)	207, 246, 318, 768
DpnII	GATC	4 cut(s)	205, 244, 316, 766
DraI	TTTAAA	2 cut(s)	574, 934
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
Eco47I	GGWCC	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	796
EcoRI	GAATTC	2 cut(s)	356, 448
EcoRII	CCWGG	2 cut(s)	432, 879
EcoT22I	ATGCAT	1 cut(s)	397
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	2 cut(s)	117, 399
FaiI	YATR	9 cut(s)	115, 173, 347, 384, 397, 530, 609, 822, 898
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	2 cut(s)	113, 395
Fnu4HI	GCNGC	2 cut(s)	533, 725
FokI	GGATG	3 cut(s)	17, 691, 758
Fsp4HI	GCNGC	2 cut(s)	533, 725
GluI	GCNGC	2 cut(s)	533, 725
HaeIII	GGCC	2 cut(s)	200, 798
Hin1II	CATG	2 cut(s)	117, 399
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	4 cut(s)	77, 277, 371, 624
HphI	GGTGA	2 cut(s)	532, 704
Hpy166II	GTNNAC	4 cut(s)	189, 423, 566, 585
Hpy188I	TCNGA	3 cut(s)	225, 391, 990
Hpy188III	TCNNGA	6 cut(s)	63, 164, 445, 617, 770, 967
Hpy8I	GTNNAC	4 cut(s)	189, 423, 566, 585
HpyAV	CCTTC	2 cut(s)	830, 949
HpyCH4III	ACNGT	2 cut(s)	589, 917
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	9 cut(s)	108, 395, 464, 634, 651, 684, 762, 793, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	759
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	117, 399
Kzo9I	GATC	4 cut(s)	205, 244, 316, 766
Lsp1109I	GCAGC	1 cut(s)	711
LweI	GCATC	3 cut(s)	283, 382, 713
MabI	ACCWGGT	1 cut(s)	432
MaeII	ACGT	1 cut(s)	151
MalI	GATC	4 cut(s)	207, 246, 318, 768
MboI	GATC	4 cut(s)	205, 244, 316, 766
MboII	GAAGA	7 cut(s)	27, 30, 380, 552, 669, 857, 869
MfeI	CAATTG	1 cut(s)	711
MluCI	AATT	9 cut(s)	330, 356, 448, 456, 485, 525, 665, 696, 711
MlyI	GAGTC	2 cut(s)	86, 271
MmeI	TCCRAC	1 cut(s)	723
MnlI	CCTC	6 cut(s)	19, 196, 411, 694, 945, 991
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	9 cut(s)	69, 573, 660, 735, 783, 801, 933, 945, 993
MslI	CAYNNNNRTG	2 cut(s)	561, 713
MspR9I	CCNGG	2 cut(s)	434, 881
MunI	CAATTG	1 cut(s)	711
MvaI	CCWGG	2 cut(s)	434, 881
MwoI	GCNNNNNNNGC	1 cut(s)	759
NdeII	GATC	4 cut(s)	205, 244, 316, 766
NlaIII	CATG	2 cut(s)	117, 399
NlaIV	GGNNCC	2 cut(s)	235, 877
NmeAIII	GCCGAG	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	1 cut(s)	399
OliI	CACNNNNGTG	1 cut(s)	713
PaeI	GCATGC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	371, 624
PkrI	GCNGC	2 cut(s)	534, 726
Ple19I	CGATCG	1 cut(s)	319
PleI	GAGTC	2 cut(s)	85, 271
PpsI	GAGTC	2 cut(s)	85, 271
PshBI	ATTAAT	1 cut(s)	993
Psp6I	CCWGG	2 cut(s)	432, 879
PspGI	CCWGG	2 cut(s)	432, 879
PspN4I	GGNNCC	2 cut(s)	235, 877
PspPI	GGNCC	2 cut(s)	233, 796
PvuI	CGATCG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	119, 364
RsaNI	GTAC	2 cut(s)	118, 363
RseI	CAYNNNNRTG	2 cut(s)	561, 713
SaqAI	TTAA	9 cut(s)	69, 573, 660, 735, 783, 801, 933, 945, 993
SatI	GCNGC	2 cut(s)	533, 725
Sau3AI	GATC	4 cut(s)	205, 244, 316, 766
Sau96I	GGNCC	2 cut(s)	233, 796
SchI	GAGTC	2 cut(s)	86, 271
ScrFI	CCNGG	2 cut(s)	434, 881
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	3 cut(s)	283, 382, 713
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	561, 713
SphI	GCATGC	1 cut(s)	399
Sse9I	AATT	9 cut(s)	330, 356, 448, 456, 485, 525, 665, 696, 711
SsiI	CCGC	1 cut(s)	532
StyD4I	CCNGG	2 cut(s)	432, 879
TaaI	ACNGT	2 cut(s)	589, 917
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	4 cut(s)	265, 291, 315, 769
TasI	AATT	9 cut(s)	330, 356, 448, 456, 485, 525, 665, 696, 711
TauI	GCSGC	1 cut(s)	535
TfiI	GAWTC	2 cut(s)	371, 624
Tru1I	TTAA	9 cut(s)	69, 573, 660, 735, 783, 801, 933, 945, 993
Tru9I	TTAA	9 cut(s)	69, 573, 660, 735, 783, 801, 933, 945, 993
TscAI	CASTG	2 cut(s)	594, 653
TseI	GCWGC	1 cut(s)	724
TspDTI	ATGAA	3 cut(s)	273, 809, 870
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	2 cut(s)	594, 653
VpaK11BI	GGWCC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	993
XagI	CCTNNNNNAGG	1 cut(s)	803
XapI	RAATTY	3 cut(s)	356, 448, 485
XceI	RCATGY	1 cut(s)	399
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.