Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8477933.1

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Reverse (-)

27 .. 2003

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8477933.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgcacataaagcagattataattgaaggatttaagagctacagagaacaggttgctactgagccattcagtccaaaaatcaattgcgttgttggtgctaatgggtccggaaagacaaactttttccatgcaattcggtttgtactaagtgaccttttccaaaaccttcgaagcgacgatcggcatgctctactccatgaaggtgcagggcaccaagtcttatctgcatttgtggagattgtcttcgataactctgacaatcgaataccggttgataaggaggaagtgcggttgcgaaggacaattggtttgaagaaggatgagtatttcttggatggaaagcacatcacgaaaactgaggttatgaatttactggaaagtgctgggttctctcgctccaatccatattatgttgtgcagcaaggaaagatagcatccttgacactgatgaaagattctgagcgactggatttacttaaggaaatcggtggcactcgagtgtatgaggagagacgtcaagaaagtttgaaaatcatgcaggacactggtaacaaaagaaagcagataattcaagttgttcagtacttggatgagagattaaaggaactggacgaagagaaagaggaactcagaaagtatcagcagcttgacaagcagcgaaaatctctggaatacactatatatgacaaggaacttcaggatgctcgccaaaggctggcagaggttagtagaaatgatctatggcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

249

Amino Acids

29.21

Weight (kDa)

7.79

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
AatII	GACGTC	1 cut(s)	517
AccB1I	GGYRCC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	715
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	680
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	2 cut(s)	144, 584
AfiI	CCNNNNNNNGG	1 cut(s)	715
AflII	CTTAAG	1 cut(s)	476
AgeI	ACCGGT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	26, 313, 529, 572
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	2 cut(s)	39, 646
AluI	AGCT	2 cut(s)	39, 646
Alw26I	GTCTC	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	495
Aor13HI	TCCGGA	1 cut(s)	107
ApeKI	GCWGC	3 cut(s)	418, 643, 655
ApoI	RAATTY	1 cut(s)	367
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AsiGI	ACCGGT	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	105
AsuII	TTCGAA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	235
BbvI	GCAGC	3 cut(s)	430, 655, 667
BccI	CCATC	1 cut(s)	329
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcoDI	GTCTC	1 cut(s)	505
BfmI	CTRYAG	1 cut(s)	40
BfrI	CTTAAG	1 cut(s)	476
BisI	GCNGC	3 cut(s)	419, 644, 656
BlsI	GCNGC	3 cut(s)	420, 645, 657
BmcAI	AGTACT	1 cut(s)	584
Bme18I	GGWCC	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	106, 212
BmsI	GCATC	2 cut(s)	443, 691
BpiI	GAAGAC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	514
BsaWI	WCCGGW	2 cut(s)	107, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	4 cut(s)	378, 471, 550, 612
BseAI	TCCGGA	1 cut(s)	107
BseGI	GGATG	5 cut(s)	325, 340, 434, 595, 706
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseMII	CTCAG	4 cut(s)	51, 348, 450, 643
BseNI	ACTGG	4 cut(s)	378, 471, 550, 612
BseRI	GAGGAG	1 cut(s)	521
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	430, 655, 667
BseYI	CCCAGC	1 cut(s)	383
BsgI	GTGCAG	2 cut(s)	225, 437
Bsh1285I	CGRYCG	1 cut(s)	181
BshNI	GGYRCC	1 cut(s)	210
BshTI	ACCGGT	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	108, 269
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmAI	GTCTC	1 cut(s)	505
BsmBI	CGTCTC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	178, 736
BspACI	CCGC	1 cut(s)	289
BspCNI	CTCAG	4 cut(s)	52, 349, 451, 642
BspEI	TCCGGA	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	106, 212
BspT104I	TTCGAA	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	4 cut(s)	378, 471, 550, 612
BssAI	RCCGGY	1 cut(s)	268
BssMI	GATC	2 cut(s)	178, 736
BssNI	GRCGYC	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	609
BstACI	GRCGYC	1 cut(s)	514
BstAFI	CTTAAG	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	186, 706, 717
BstDEI	CTNAG	5 cut(s)	60, 146, 357, 459, 629
BstF5I	GGATG	5 cut(s)	325, 340, 434, 595, 706
BstKTI	GATC	2 cut(s)	181, 739
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	2 cut(s)	178, 736
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 652
BstNSI	RCATGY	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	430, 655, 667
BstV2I	GAAGAC	1 cut(s)	235
BtsCI	GGATG	5 cut(s)	325, 340, 434, 595, 706
BtsIMutI	CAGTG	2 cut(s)	443, 543
Cac8I	GCNNGC	3 cut(s)	186, 706, 717
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	143, 583
CspAI	ACCGGT	1 cut(s)	268
CviAII	CATG	4 cut(s)	128, 185, 197, 535
CviJI	RGCY	4 cut(s)	39, 64, 646, 715
CviKI_1	RGCY	4 cut(s)	39, 64, 646, 715
CviQI	GTAC	2 cut(s)	143, 583
DdeI	CTNAG	5 cut(s)	60, 146, 357, 459, 629
DpnI	GATC	2 cut(s)	180, 738
DpnII	GATC	2 cut(s)	178, 736
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	505
FaeI	CATG	4 cut(s)	131, 188, 200, 538
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	4 cut(s)	127, 184, 196, 534
Fnu4HI	GCNGC	3 cut(s)	419, 644, 656
FokI	GGATG	5 cut(s)	332, 347, 421, 602, 713
Fsp4HI	GCNGC	3 cut(s)	419, 644, 656
GluI	GCNGC	3 cut(s)	419, 644, 656
GsaI	CCCAGC	1 cut(s)	387
HapII	CCGG	2 cut(s)	108, 269
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	4 cut(s)	131, 188, 200, 538
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	2 cut(s)	108, 269
Hpy188I	TCNGA	3 cut(s)	256, 460, 632
Hpy188III	TCNNGA	5 cut(s)	108, 349, 518, 668, 698
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	5 cut(s)	20, 176, 194, 291, 310
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	6 cut(s)	4, 131, 206, 227, 418, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 652
HpyF3I	CTNAG	5 cut(s)	60, 146, 357, 459, 629
HpySE526I	ACGT	1 cut(s)	514
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	4 cut(s)	131, 188, 200, 538
Kpn2I	TCCGGA	1 cut(s)	107
Kzo9I	GATC	2 cut(s)	178, 736
LmnI	GCTCC	1 cut(s)	401
Lsp1109I	GCAGC	3 cut(s)	430, 655, 667
LweI	GCATC	2 cut(s)	443, 691
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	149, 548
MalI	GATC	2 cut(s)	180, 738
MboI	GATC	2 cut(s)	178, 736
MboII	GAAGA	3 cut(s)	235, 325, 626
MfeI	CAATTG	2 cut(s)	82, 303
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	6 cut(s)	21, 82, 132, 303, 367, 567
MnlI	CCTC	5 cut(s)	274, 352, 499, 616, 715
MroI	TCCGGA	1 cut(s)	107
MseI	TTAA	3 cut(s)	33, 477, 599
MslI	CAYNNNNRTG	2 cut(s)	201, 497
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	2 cut(s)	108, 269
MunI	CAATTG	2 cut(s)	82, 303
MwoI	GCNNNNNNNGC	2 cut(s)	10, 652
NdeII	GATC	2 cut(s)	178, 736
NlaIII	CATG	4 cut(s)	131, 188, 200, 538
NlaIV	GGNNCC	2 cut(s)	106, 212
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	1 cut(s)	188
NspV	TTCGAA	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	497
PaeI	GCATGC	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	455
PflMI	CCANNNNNTGG	1 cut(s)	715
PinAI	ACCGGT	1 cut(s)	268
PkrI	GCNGC	3 cut(s)	420, 645, 657
Ple19I	CGATCG	1 cut(s)	181
PsiI	TTATAA	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	106, 212
PspPI	GGNCC	1 cut(s)	105
PspXI	VCTCGAGB	1 cut(s)	495
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	144, 584
RsaNI	GTAC	2 cut(s)	143, 583
RseI	CAYNNNNRTG	2 cut(s)	201, 497
SaqAI	TTAA	3 cut(s)	33, 477, 599
SatI	GCNGC	3 cut(s)	419, 644, 656
Sau3AI	GATC	2 cut(s)	178, 736
Sau96I	GGNCC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	9 cut(s)	41, 54, 156, 168, 205, 363, 517, 648, 726
SfaNI	GCATC	2 cut(s)	443, 691
SfcI	CTRYAG	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	169
SinI	GGWCC	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	201, 497
SmlI	CTYRAG	2 cut(s)	476, 495
SmoI	CTYRAG	2 cut(s)	476, 495
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	6 cut(s)	21, 82, 132, 303, 367, 567
SsiI	CCGC	1 cut(s)	289
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	4 cut(s)	169, 246, 262, 496
TasI	AATT	6 cut(s)	21, 82, 132, 303, 367, 567
TatI	WGTACW	2 cut(s)	142, 582
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	3 cut(s)	33, 477, 599
Tru9I	TTAA	3 cut(s)	33, 477, 599
TscAI	CASTG	2 cut(s)	450, 550
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	3 cut(s)	418, 643, 655
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	3 cut(s)	213, 380, 464
TspRI	CASTG	2 cut(s)	450, 550
Van91I	CCANNNNNTGG	1 cut(s)	715
Vha464I	CTTAAG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	1 cut(s)	367
XceI	RCATGY	1 cut(s)	188
XhoI	CTCGAG	1 cut(s)	495
ZraI	GACGTC	1 cut(s)	515
ZrmI	AGTACT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.