pycom03g11460

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
11261574 .. 11264888
3315 bp
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UTR
Exon/CDS
Intron
pycom03g11460.2

Sequence Viewer

Length: 363 bp
ATGATTTCTTTGGTTTTTTTTTTCGTGTGTGTGTTGCTGATCTGGTGGTTTCAATATGTACATAAAGCAGGTGAGTTATTATTGAAGGATTTAAGAGCTACAGAGAACAAGTTGCTACTGAGGCCTTCAGCCCGAAAGTTAATTGTGTTGCATATTGGTGCCAATGGGTCTGGAAAGACAAACTTCTTCCATGCGATCCGGTTTGTACTAAGTGACCTTTTCCAAAACCTTCGGAGTGAGGATAGGCATGCTCTACTCCATGAAGGTGCAGGGCACCAAGTAATATCTGCGTTTGTGGAGATTGTCTTTGATAATGCTGACAATCGAATCCCGATTGCTTTTATGGATTATTGTTCATTTTGA

Protein Analysis

121

Amino Acids

13.81

Weight (kDa)

7.88

Isoelectric Point (pI)

24.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AccB1I GGYRCC 2 cut(s) 158, 273
AclWI GGATC 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 2 cut(s) 60, 207
AgsI TTSAA 2 cut(s) 53, 85
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
AlwI GGATC 1 cut(s) 190
AoxI GGCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 276
BanI GGYRCC 2 cut(s) 158, 273
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 160, 275
BsaWI WCCGGW 1 cut(s) 198
BseMII CTCAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 276
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 124
BshNI GGYRCC 2 cut(s) 158, 273
BsiSI CCGG 1 cut(s) 199
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 276
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 2 cut(s) 39, 195
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 160, 275
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 1 cut(s) 190
BspT107I GGYRCC 2 cut(s) 158, 273
BsrGI TGTACA 1 cut(s) 58
BssMI GATC 2 cut(s) 39, 195
BstAUI TGTACA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 119, 209
BstKTI GATC 2 cut(s) 42, 198
BstMBI GATC 2 cut(s) 39, 195
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 276
BsuRI GGCC 1 cut(s) 124
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 249
Csp6I GTAC 2 cut(s) 59, 206
CviAII CATG 3 cut(s) 191, 248, 260
CviJI RGCY 3 cut(s) 98, 124, 131
CviKI_1 RGCY 3 cut(s) 98, 124, 131
CviQI GTAC 2 cut(s) 59, 206
DdeI CTNAG 2 cut(s) 119, 209
DpnI GATC 2 cut(s) 41, 197
DpnII GATC 2 cut(s) 39, 195
Eco147I AGGCCT 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 111
FaeI CATG 3 cut(s) 194, 251, 263
FaiI YATR 7 cut(s) 57, 63, 153, 192, 249, 261, 344
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 3 cut(s) 190, 247, 259
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 199
Hin1II CATG 3 cut(s) 194, 251, 263
HinfI GANTC 1 cut(s) 327
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 171, 331
HpyAV CCTTC 4 cut(s) 79, 135, 239, 257
HpyCH4V TGCA 2 cut(s) 151, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 2 cut(s) 119, 209
Hsp92II CATG 3 cut(s) 194, 251, 263
Kzo9I GATC 2 cut(s) 39, 195
LpnPI CCDG 5 cut(s) 28, 54, 156, 212, 255
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 41, 197
MboI GATC 2 cut(s) 39, 195
MboII GAAGA 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 141
MnlI CCTC 2 cut(s) 114, 232
MseI TTAA 2 cut(s) 92, 140
MslI CAYNNNNRTG 2 cut(s) 156, 264
MspI CCGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 2 cut(s) 39, 195
NlaIII CATG 3 cut(s) 194, 251, 263
NlaIV GGNNCC 2 cut(s) 160, 275
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 251
PaeI GCATGC 1 cut(s) 251
PaqCI CACCTGC 1 cut(s) 59
PceI AGGCCT 1 cut(s) 124
PfeI GAWTC 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 160, 275
RsaI GTAC 2 cut(s) 60, 207
RsaNI GTAC 2 cut(s) 59, 206
RseI CAYNNNNRTG 2 cut(s) 156, 264
SaqAI TTAA 2 cut(s) 92, 140
Sau3AI GATC 2 cut(s) 39, 195
SduI GDGCHC 1 cut(s) 276
SetI ASST 5 cut(s) 73, 100, 219, 231, 268
SfcI CTRYAG 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 156, 264
SphI GCATGC 1 cut(s) 251
Sse9I AATT 1 cut(s) 141
SseBI AGGCCT 1 cut(s) 124
StuI AGGCCT 1 cut(s) 124
TaqI TCGA 1 cut(s) 325
TasI AATT 1 cut(s) 141
TatI WGTACW 2 cut(s) 58, 205
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 2 cut(s) 92, 140
Tru9I TTAA 2 cut(s) 92, 140
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 276, 345
XceI RCATGY 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.