Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018615.1

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Reverse (-)

1073 .. 4108

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgaagagggctgaaatggtcactgatctcattgatcatttgactccaaaggagaaggatcttctctcaagattgaatcctgaaatagcagatcttaaagagaagcttattacatgcaaggcggatcgaactgagaacttggaagacaactatgagaggacatttcaggatgtagccaaggagctagagcagcaactgagtaaaagaaatatgtatcttgctaaacaagaagagtactcaaagaaaatccgggaattgggtgcattgtcatcagatgcttttgaaacttccaatgagcaactgcaacggtttagtcatgtaaacaagaaagcacttgaccagtacgtaaattttacagaacaacgtgaagaactccagagaaggcaagctgaactggatgcaggtgatgagaaaattgcagaactcatatctttcttagatcaaaggaaggatgaatcaatagaacgcacttttaaaggtgttgctaggaactttcgagaagttttctctgaacttgtgcaaggtggccatggtcaccttctcatggtgaaaagaaaggatggcatccatgctgacgatgatctggatgaggacgagggaccagaaacagatagatctgagaaatatattggtgtttcttttaccgggcaaggagagactcagtccatgaagcagttgtctgggggtcagaaaactgttgttgcgttgacgcttatctttgcaatccagcaatgtgatcctgctcctttctatcttttcgatgaaatagatgcagcgctggatcttcagtacagaactgctgttggaagtatcctttatgtcgtactttgtggagttctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

280

Amino Acids

32.06

Weight (kDa)

4.87

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	392
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	4 cut(s)	66, 132, 731, 789
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	770
AfaI	GTAC	4 cut(s)	236, 344, 791, 825
AfeI	AGCGCT	1 cut(s)	777
AfiI	CCNNNNNNNGG	2 cut(s)	256, 544
AgsI	TTSAA	2 cut(s)	76, 284
AluBI	AGCT	3 cut(s)	106, 184, 389
AluI	AGCT	3 cut(s)	106, 184, 389
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	4 cut(s)	66, 132, 731, 789
AlwNI	CAGNNNCTG	1 cut(s)	196
Aor51HI	AGCGCT	1 cut(s)	777
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	2 cut(s)	190, 773
ApoI	RAATTY	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	778
AspS9I	GGNCC	1 cut(s)	599
AsuC2I	CCSGG	2 cut(s)	251, 646
AsuHPI	GGTGA	3 cut(s)	416, 527, 559
AvaII	GGWCC	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	202, 785
BccI	CCATC	1 cut(s)	554
BciVI	GTATCC	1 cut(s)	821
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	2 cut(s)	251, 646
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	2 cut(s)	185, 486
BfoI	RGCGCY	1 cut(s)	779
BfuAI	ACCTGC	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	821
BglII	AGATCT	2 cut(s)	91, 614
BisI	GCNGC	2 cut(s)	191, 774
BlsI	GCNGC	2 cut(s)	192, 775
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	2 cut(s)	251, 646
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	2 cut(s)	251, 646
BmsI	GCATC	4 cut(s)	265, 388, 573, 760
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	52
BpuMI	CCSGG	2 cut(s)	251, 646
BsaAI	YACGTR	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	177, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 544
Bse1I	ACTGG	2 cut(s)	340, 399
Bse3DI	GCAATG	1 cut(s)	737
BseDI	CCNNGG	2 cut(s)	177, 529
BseGI	GGATG	6 cut(s)	175, 403, 457, 564, 565, 592
BseLI	CCNNNNNNNGG	2 cut(s)	256, 544
BseMI	GCAATG	1 cut(s)	737
BseMII	CTCAG	4 cut(s)	123, 188, 609, 674
BseNI	ACTGG	2 cut(s)	340, 399
BseXI	GCAGC	2 cut(s)	202, 785
BshFI	GGCC	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	250, 645
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	256, 544
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	528
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	4 cut(s)	124, 189, 610, 673
BspLI	GGNNCC	1 cut(s)	600
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	4 cut(s)	66, 132, 731, 789
BsrDI	GCAATG	1 cut(s)	737
BsrI	ACTGG	2 cut(s)	340, 399
BssECI	CCNNGG	2 cut(s)	177, 529
BssT1I	CCWWGG	2 cut(s)	177, 529
Bst4CI	ACNGT	2 cut(s)	309, 697
Bst6I	CTCTTC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	5 cut(s)	132, 197, 436, 618, 660
BstDSI	CCRYGG	1 cut(s)	529
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	6 cut(s)	175, 403, 457, 564, 565, 592
BstH2I	RGCGCY	1 cut(s)	779
BstHHI	GCGC	1 cut(s)	778
BstMAI	GTCTC	1 cut(s)	650
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	117
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	249, 644
BstSNI	TACGTA	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	202, 785
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	4 cut(s)	58, 91, 614, 781
BstYI	RGATCY	4 cut(s)	58, 91, 614, 781
BsuI	GTATCC	1 cut(s)	821
BsuRI	GGCC	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	6 cut(s)	175, 403, 457, 564, 565, 592
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	1 cut(s)	778
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	1 cut(s)	718
Csp6I	GTAC	4 cut(s)	235, 343, 790, 824
CviAII	CATG	6 cut(s)	114, 317, 530, 544, 569, 667
CviJI	RGCY	6 cut(s)	11, 106, 176, 184, 389, 528
CviKI_1	RGCY	6 cut(s)	11, 106, 176, 184, 389, 528
CviQI	GTAC	4 cut(s)	235, 343, 790, 824
DdeI	CTNAG	5 cut(s)	132, 197, 436, 618, 660
DraI	TTTAAA	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	137
Eco105I	TACGTA	1 cut(s)	346
Eco130I	CCWWGG	2 cut(s)	177, 529
Eco47I	GGWCC	1 cut(s)	599
Eco47III	AGCGCT	1 cut(s)	777
Eco57I	CTGAAG	1 cut(s)	770
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoT14I	CCWWGG	2 cut(s)	177, 529
ErhI	CCWWGG	2 cut(s)	177, 529
FaeI	CATG	6 cut(s)	117, 320, 533, 547, 572, 670
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	6 cut(s)	113, 316, 529, 543, 568, 666
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	191, 774
FokI	GGATG	6 cut(s)	182, 410, 464, 551, 572, 599
Fsp4HI	GCNGC	2 cut(s)	191, 774
FspBI	CTAG	2 cut(s)	185, 486
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	2 cut(s)	191, 774
GsuI	CTGGAG	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	779
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	2 cut(s)	250, 645
HgaI	GACGC	1 cut(s)	718
HhaI	GCGC	1 cut(s)	778
Hin1II	CATG	6 cut(s)	117, 320, 533, 547, 572, 670
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	4 cut(s)	43, 76, 455, 658
HpaII	CCGG	2 cut(s)	250, 645
HphI	GGTGA	3 cut(s)	416, 527, 559
Hpy166II	GTNNAC	2 cut(s)	322, 708
Hpy188I	TCNGA	4 cut(s)	274, 511, 619, 690
Hpy188III	TCNNGA	6 cut(s)	69, 80, 167, 376, 497, 584
Hpy8I	GTNNAC	2 cut(s)	322, 708
HpyAV	CCTTC	4 cut(s)	49, 375, 442, 548
HpyCH4III	ACNGT	2 cut(s)	309, 697
HpyCH4IV	ACGT	2 cut(s)	345, 364
HpyCH4V	TGCA	8 cut(s)	117, 263, 304, 401, 419, 520, 722, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	5 cut(s)	132, 197, 436, 618, 660
HpySE526I	ACGT	2 cut(s)	345, 364
Hsp92II	CATG	6 cut(s)	117, 320, 533, 547, 572, 670
HspAI	GCGC	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	181, 748
Lsp1109I	GCAGC	2 cut(s)	202, 785
LweI	GCATC	4 cut(s)	265, 388, 573, 760
MaeI	CTAG	2 cut(s)	185, 486
MaeII	ACGT	2 cut(s)	345, 364
MaeIII	GTNAC	2 cut(s)	19, 533
MboII	GAAGA	6 cut(s)	16, 53, 155, 242, 380, 776
MflI	RGATCY	4 cut(s)	58, 91, 614, 781
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	3 cut(s)	254, 349, 414
MluNI	TGGCCA	1 cut(s)	528
MlyI	GAGTC	2 cut(s)	37, 652
MmeI	TCCRAC	1 cut(s)	784
MnlI	CCTC	3 cut(s)	150, 583, 589
Mox20I	TGGCCA	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	2 cut(s)	96, 474
Msp20I	TGGCCA	1 cut(s)	528
MspI	CCGG	2 cut(s)	250, 645
MspR9I	CCNGG	2 cut(s)	251, 646
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	2 cut(s)	251, 646
NcoI	CCATGG	1 cut(s)	529
NlaIII	CATG	6 cut(s)	117, 320, 533, 547, 572, 670
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	19, 533
NspI	RCATGY	1 cut(s)	117
PaqCI	CACCTGC	1 cut(s)	392
PfeI	GAWTC	2 cut(s)	76, 455
PflFI	GACNNNGTC	1 cut(s)	661
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	192, 775
PleI	GAGTC	2 cut(s)	37, 652
PpsI	GAGTC	2 cut(s)	37, 652
Ppu21I	YACGTR	1 cut(s)	346
PspEI	GGTNACC	1 cut(s)	533
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	599
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	4 cut(s)	58, 91, 614, 781
PsyI	GACNNNGTC	1 cut(s)	661
RsaI	GTAC	4 cut(s)	236, 344, 791, 825
RsaNI	GTAC	4 cut(s)	235, 343, 790, 824
SaqAI	TTAA	2 cut(s)	96, 474
SatI	GCNGC	2 cut(s)	191, 774
Sau96I	GGNCC	1 cut(s)	599
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	2 cut(s)	37, 652
ScrFI	CCNGG	2 cut(s)	251, 646
SetI	ASST	9 cut(s)	108, 186, 348, 367, 391, 406, 481, 526, 540
SfaNI	GCATC	4 cut(s)	265, 388, 573, 760
SinI	GGWCC	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SnaBI	TACGTA	1 cut(s)	346
Sse9I	AATT	3 cut(s)	254, 349, 414
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	185, 486
StyD4I	CCNGG	2 cut(s)	249, 644
StyI	CCWWGG	2 cut(s)	177, 529
TaaI	ACNGT	2 cut(s)	309, 697
TaiI	ACGT	2 cut(s)	348, 367
TaqI	TCGA	3 cut(s)	127, 496, 759
TasI	AATT	3 cut(s)	254, 349, 414
TatI	WGTACW	2 cut(s)	234, 789
TfiI	GAWTC	2 cut(s)	76, 455
Tru1I	TTAA	2 cut(s)	96, 474
Tru9I	TTAA	2 cut(s)	96, 474
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	2 cut(s)	19, 533
TseI	GCWGC	2 cut(s)	190, 773
Tsp45I	GTSAC	2 cut(s)	19, 533
TspDTI	ATGAA	4 cut(s)	17, 468, 683, 777
TspRI	CASTG	1 cut(s)	28
Tth111I	GACNNNGTC	1 cut(s)	661
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	1 cut(s)	349
XceI	RCATGY	1 cut(s)	117
XspI	CTAG	2 cut(s)	185, 486
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.